Lsi08G001190 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G001190
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Resistance gene-like protein
Location	chr08: 2579764 .. 2580165 (+)
RNA-Seq Expression	Lsi08G001190
Synteny	Lsi08G001190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATATTTGTATGAGACATTGAATAATTTGGGGATGATAACGACTTTTGTAGACGAACATGAACTATTAGTTGGAGATCGTCTGAGTGAGAGGTTAGAGAAAACAATTGAAGAATCAAGGATTTCTATTGTGGTTTTATCAGAAAACTATGGTTCTTCTAAGTGGTGCTTGAGAGAGTTGGTGAAGATTATAGAGTGCATGGATGACAGAACAAATCGAGTCGTTCCTGTGTTTTACCATGTGGATCCTTCTGATGTTCGTAATCAATCTAGAACATTTAAGGAAAGTTTTGATGTATATGAGACGATATACAACTTGGAGGAGGAAGTCGAACAATGGAGGGAAGCTTTGACAAGAGTTGGTCATCTCGTCGGAGTCGTAGTAAGAAAGGACAGGTGA

mRNA sequence

ATGGGATATTTGTATGAGACATTGAATAATTTGGGGATGATAACGACTTTTGTAGACGAACATGAACTATTAGTTGGAGATCGTCTGAGTGAGAGGTTAGAGAAAACAATTGAAGAATCAAGGATTTCTATTGTGGTTTTATCAGAAAACTATGGTTCTTCTAAGTGGTGCTTGAGAGAGTTGGTGAAGATTATAGAGTGCATGGATGACAGAACAAATCGAGTCGTTCCTGTGTTTTACCATGTGGATCCTTCTGATGTTCGTAATCAATCTAGAACATTTAAGGAAAGTTTTGATGTATATGAGACGATATACAACTTGGAGGAGGAAGTCGAACAATGGAGGGAAGCTTTGACAAGAGTTGGTCATCTCGTCGGAGTCGTAGTAAGAAAGGACAGGTGA

Coding sequence (CDS)

ATGGGATATTTGTATGAGACATTGAATAATTTGGGGATGATAACGACTTTTGTAGACGAACATGAACTATTAGTTGGAGATCGTCTGAGTGAGAGGTTAGAGAAAACAATTGAAGAATCAAGGATTTCTATTGTGGTTTTATCAGAAAACTATGGTTCTTCTAAGTGGTGCTTGAGAGAGTTGGTGAAGATTATAGAGTGCATGGATGACAGAACAAATCGAGTCGTTCCTGTGTTTTACCATGTGGATCCTTCTGATGTTCGTAATCAATCTAGAACATTTAAGGAAAGTTTTGATGTATATGAGACGATATACAACTTGGAGGAGGAAGTCGAACAATGGAGGGAAGCTTTGACAAGAGTTGGTCATCTCGTCGGAGTCGTAGTAAGAAAGGACAGGTGA

Protein sequence

MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRELVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETIYNLEEEVEQWREALTRVGHLVGVVVRKDR

Homology

[Close]

BLAST of Lsi08G001190 vs. ExPASy Swiss-Prot
Match: Q40392 (TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 61/132 (46.21%), Postives = 84/132 (63.64%), Query Frame = 0


Query: 3   YLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRELV 62
           +LYE LN+ G I TF D+  L  G  +   L K IEES+ +IVV SENY +S+WCL ELV
Sbjct: 30  HLYEVLNDKG-IKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELV 89

Query: 63  KIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETIYNLE-EEVEQWREALTRV 122
           KI+EC       V+P+FY VDPS VRNQ  +F ++F+ +ET Y  + E +++WR AL   
Sbjct: 90  KIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEA 149

Query: 123 GHLVGVVVRKDR 134
            +L G    +D+
Sbjct: 150 ANLKGSCDNRDK 160

[Close]

BLAST of Lsi08G001190 vs. ExPASy Swiss-Prot
Match: V9M2S5 (Disease resistance protein RPV1 OS=Vitis rotundifolia OX=103349 GN=RPV1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 3   YLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRELV 62
           +LY  L   G I TF D+  L  G+ ++  L K IEESR S++V SENY  S+WCL ELV
Sbjct: 42  HLYSALGRRG-IRTFRDD-RLRRGEAIAPELLKAIEESRSSVIVFSENYAHSRWCLDELV 101

Query: 63  KIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETIYNLEEEVEQWREALTRVG 122
           KI+EC  D  + V P+FYHVDPS VR Q  +F E+F  YE   N ++++ +WR ALT   
Sbjct: 102 KIMECQKDLGHAVFPIFYHVDPSHVRKQEGSFGEAFAGYEE--NWKDKIPRWRTALTEAA 161

Query: 123 HLVGVVVRKDR 134
           +L G  +  DR
Sbjct: 162 NLSGWHLLDDR 168

[Close]

BLAST of Lsi08G001190 vs. ExPASy Swiss-Prot
Match: V9M398 (Disease resistance protein RUN1 OS=Vitis rotundifolia OX=103349 GN=RUN1 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.6e-22
Identity = 60/127 (47.24%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 3   YLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRELV 62
           +LY  L   G I TF D+ +L  G+ ++  L K IEESR S++V SENY  S+WCL ELV
Sbjct: 45  HLYSALGRRG-IRTFRDD-KLRRGEAIAPELLKAIEESRSSVIVFSENYARSRWCLDELV 104

Query: 63  KIIECMDDRT---NRVVPVFYHVDPSDVRNQSRTFKESFDVYETIYNLEEEVEQWREALT 122
           KI+EC  D+    + V P+FYHVDPS VR Q  +F E+F  Y    NL++++ +WR ALT
Sbjct: 105 KIMECHKDKKDPGHAVFPIFYHVDPSHVRKQEGSFGEAFAGYGE--NLKDKIPRWRTALT 164

Query: 123 RVGHLVG 127
              +L G
Sbjct: 165 EAANLSG 167

[Close]

BLAST of Lsi08G001190 vs. ExPASy Swiss-Prot
Match: A0A290U7C4 (Disease resistance protein Roq1 OS=Nicotiana benthamiana OX=4100 GN=ROQ1 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-21
Identity = 58/127 (45.67%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           +G+L+  L   G I TF+D+ EL  G  +S  L K I ESR ++VV S+NY SS WCL E
Sbjct: 28  VGHLFNALIEKG-IHTFMDDKELKRGKSISSELMKAIGESRFAVVVFSKNYASSTWCLEE 87

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYE-TIYNLEEEVEQWREALT 120
           LVKI+E  +     VVPVFY VDPS VR Q+  +   F  +E  + +  ++V +WREALT
Sbjct: 88  LVKILEIHEKFELIVVPVFYDVDPSTVRKQNGEYAVCFTKFEANLVDDRDKVLRWREALT 147

Query: 121 RVGHLVG 127
           +V ++ G
Sbjct: 148 KVANISG 153

[Close]

BLAST of Lsi08G001190 vs. ExPASy Swiss-Prot
Match: F4I594 (Disease resistance protein RML1A OS=Arabidopsis thaliana OX=3702 GN=RLM1A PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-20
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           + +  +  NN G+  T  D+  +L G+ +S  L + I ESRISIV+LS+NY SS WCL E
Sbjct: 30  LSHFRKQFNNNGI--TMFDDQRILRGETISPALTQAIRESRISIVLLSKNYASSGWCLDE 89

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYET-IYNLEEEVEQWREALT 120
           L++I++C DD    V+ VFY VDPSDVR Q+  F  +F+  ET     EEE ++W +AL 
Sbjct: 90  LLEILKCKDDMGQIVMTVFYGVDPSDVRKQTGEFGIAFN--ETCACRTEEERQKWSQALN 149

Query: 121 RVGHLVG 127
            VG++ G
Sbjct: 150 YVGNIAG 152

[Close]

BLAST of Lsi08G001190 vs. ExPASy TrEMBL
Match: A0A6J1CK85 (TMV resistance protein N-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012052 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.9e-34
Identity = 80/140 (57.14%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           +GYLY+ L+ LG I TF D++ LL+GD +S +L + IE+SR SIVVLS++Y SSKWCLRE
Sbjct: 29  IGYLYKELHQLG-IMTFKDDNSLLIGDNISNKLVRAIEKSRSSIVVLSKDYASSKWCLRE 88

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVY-ETIYNL-------EEEVE 120
           L KII+CM   ++RV+PVFYHVDPSDVR+QS +FK+ FD Y ET+          E EV+
Sbjct: 89  LAKIIDCMVQCSHRVLPVFYHVDPSDVRHQSGSFKKCFDEYEETLQQFMNYEQKEEHEVQ 148

Query: 121 QWREALTRVGHLVGVVVRKD 133
           QWREA+T++ +L GVVV K+
Sbjct: 149 QWREAMTKIANLTGVVVTKE 167

[Close]

BLAST of Lsi08G001190 vs. ExPASy TrEMBL
Match: A0A6J1CJ23 (TMV resistance protein N-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012052 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.9e-34
Identity = 80/140 (57.14%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           +GYLY+ L+ LG I TF D++ LL+GD +S +L + IE+SR SIVVLS++Y SSKWCLRE
Sbjct: 29  IGYLYKELHQLG-IMTFKDDNSLLIGDNISNKLVRAIEKSRSSIVVLSKDYASSKWCLRE 88

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVY-ETIYNL-------EEEVE 120
           L KII+CM   ++RV+PVFYHVDPSDVR+QS +FK+ FD Y ET+          E EV+
Sbjct: 89  LAKIIDCMVQCSHRVLPVFYHVDPSDVRHQSGSFKKCFDEYEETLQQFMNYEQKEEHEVQ 148

Query: 121 QWREALTRVGHLVGVVVRKD 133
           QWREA+T++ +L GVVV K+
Sbjct: 149 QWREAMTKIANLTGVVVTKE 167

[Close]

BLAST of Lsi08G001190 vs. ExPASy TrEMBL
Match: A0A1S3CAY9 (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498655 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.9e-33
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 0


Query: 1   MGYLYETLNNLG-MITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLR 60
           MGYL   L N   +I  F+D   LL+GD L  RL + IEESR +IVVLS+NY +S+WCLR
Sbjct: 20  MGYLSNALRNYSCLIRFFLDNERLLIGDDLDRRLMEAIEESRTAIVVLSQNYSTSRWCLR 79

Query: 61  ELVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETI-YNLEEEVEQWREAL 120
           EL KI+E MDD TNRV+PVFYHVDPS VR+QS  F+ SF  YE    + +E+V +WR+A 
Sbjct: 80  ELEKIMESMDDGTNRVLPVFYHVDPSHVRHQSGPFERSFVEYENNGQDSQEQVHRWRDAF 139

Query: 121 TRVGHLVGVVVRKD 133
            RVGHL GVVV K+
Sbjct: 140 ARVGHLAGVVVNKN 153

[Close]

BLAST of Lsi08G001190 vs. ExPASy TrEMBL
Match: A0A1S3CAK4 (TMV resistance protein N-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498655 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.9e-33
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 0


Query: 1   MGYLYETLNNLG-MITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLR 60
           MGYL   L N   +I  F+D   LL+GD L  RL + IEESR +IVVLS+NY +S+WCLR
Sbjct: 20  MGYLSNALRNYSCLIRFFLDNERLLIGDDLDRRLMEAIEESRTAIVVLSQNYSTSRWCLR 79

Query: 61  ELVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETI-YNLEEEVEQWREAL 120
           EL KI+E MDD TNRV+PVFYHVDPS VR+QS  F+ SF  YE    + +E+V +WR+A 
Sbjct: 80  ELEKIMESMDDGTNRVLPVFYHVDPSHVRHQSGPFERSFVEYENNGQDSQEQVHRWRDAF 139

Query: 121 TRVGHLVGVVVRKD 133
            RVGHL GVVV K+
Sbjct: 140 ARVGHLAGVVVNKN 153

[Close]

BLAST of Lsi08G001190 vs. ExPASy TrEMBL
Match: A0A1S3CAG4 (TMV resistance protein N-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498655 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.9e-33
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 0


Query: 1   MGYLYETLNNLG-MITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLR 60
           MGYL   L N   +I  F+D   LL+GD L  RL + IEESR +IVVLS+NY +S+WCLR
Sbjct: 20  MGYLSNALRNYSCLIRFFLDNERLLIGDDLDRRLMEAIEESRTAIVVLSQNYSTSRWCLR 79

Query: 61  ELVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETI-YNLEEEVEQWREAL 120
           EL KI+E MDD TNRV+PVFYHVDPS VR+QS  F+ SF  YE    + +E+V +WR+A 
Sbjct: 80  ELEKIMESMDDGTNRVLPVFYHVDPSHVRHQSGPFERSFVEYENNGQDSQEQVHRWRDAF 139

Query: 121 TRVGHLVGVVVRKD 133
            RVGHL GVVV K+
Sbjct: 140 ARVGHLAGVVVNKN 153

[Close]

BLAST of Lsi08G001190 vs. NCBI nr
Match: XP_038890296.1 (TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-38
Identity = 84/131 (64.12%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           +G+L++ L+N G+IT F+D  ELL+GDRL E LEK+IEESR +IVVLS+NY  SKWCLRE
Sbjct: 20  IGHLFDALHNYGLITIFLDNEELLIGDRLDEMLEKSIEESRTAIVVLSKNYADSKWCLRE 79

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETIYN--LEEEVEQWREAL 120
           LVKI+E MDD TNRV+PVFYHVDPSDVR QS  F+E FD Y+ I +    +EV  WR  L
Sbjct: 80  LVKIMETMDDGTNRVLPVFYHVDPSDVRRQSGCFRERFDEYDQINDPLQRQEVNNWRTTL 139

Query: 121 TRVGHLVGVVV 130
           T+VG+L GVVV
Sbjct: 140 TKVGNLAGVVV 150

[Close]

BLAST of Lsi08G001190 vs. NCBI nr
Match: XP_022141771.1 (TMV resistance protein N-like isoform X2 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 3.9e-34
Identity = 80/140 (57.14%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           +GYLY+ L+ LG I TF D++ LL+GD +S +L + IE+SR SIVVLS++Y SSKWCLRE
Sbjct: 29  IGYLYKELHQLG-IMTFKDDNSLLIGDNISNKLVRAIEKSRSSIVVLSKDYASSKWCLRE 88

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVY-ETIYNL-------EEEVE 120
           L KII+CM   ++RV+PVFYHVDPSDVR+QS +FK+ FD Y ET+          E EV+
Sbjct: 89  LAKIIDCMVQCSHRVLPVFYHVDPSDVRHQSGSFKKCFDEYEETLQQFMNYEQKEEHEVQ 148

Query: 121 QWREALTRVGHLVGVVVRKD 133
           QWREA+T++ +L GVVV K+
Sbjct: 149 QWREAMTKIANLTGVVVTKE 167

[Close]

BLAST of Lsi08G001190 vs. NCBI nr
Match: XP_022141770.1 (TMV resistance protein N-like isoform X1 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 3.9e-34
Identity = 80/140 (57.14%), Postives = 106/140 (75.71%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           +GYLY+ L+ LG I TF D++ LL+GD +S +L + IE+SR SIVVLS++Y SSKWCLRE
Sbjct: 29  IGYLYKELHQLG-IMTFKDDNSLLIGDNISNKLVRAIEKSRSSIVVLSKDYASSKWCLRE 88

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVY-ETIYNL-------EEEVE 120
           L KII+CM   ++RV+PVFYHVDPSDVR+QS +FK+ FD Y ET+          E EV+
Sbjct: 89  LAKIIDCMVQCSHRVLPVFYHVDPSDVRHQSGSFKKCFDEYEETLQQFMNYEQKEEHEVQ 148

Query: 121 QWREALTRVGHLVGVVVRKD 133
           QWREA+T++ +L GVVV K+
Sbjct: 149 QWREAMTKIANLTGVVVTKE 167

[Close]

BLAST of Lsi08G001190 vs. NCBI nr
Match: XP_008459558.1 (PREDICTED: TMV resistance protein N-like isoform X4 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 0


Query: 1   MGYLYETLNNLG-MITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLR 60
           MGYL   L N   +I  F+D   LL+GD L  RL + IEESR +IVVLS+NY +S+WCLR
Sbjct: 20  MGYLSNALRNYSCLIRFFLDNERLLIGDDLDRRLMEAIEESRTAIVVLSQNYSTSRWCLR 79

Query: 61  ELVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETI-YNLEEEVEQWREAL 120
           EL KI+E MDD TNRV+PVFYHVDPS VR+QS  F+ SF  YE    + +E+V +WR+A 
Sbjct: 80  ELEKIMESMDDGTNRVLPVFYHVDPSHVRHQSGPFERSFVEYENNGQDSQEQVHRWRDAF 139

Query: 121 TRVGHLVGVVVRKD 133
            RVGHL GVVV K+
Sbjct: 140 ARVGHLAGVVVNKN 153

[Close]

BLAST of Lsi08G001190 vs. NCBI nr
Match: XP_008459552.1 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo] >XP_008459553.1 PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo] >XP_008459554.1 PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo] >XP_008459555.1 PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 0


Query: 1   MGYLYETLNNLG-MITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLR 60
           MGYL   L N   +I  F+D   LL+GD L  RL + IEESR +IVVLS+NY +S+WCLR
Sbjct: 20  MGYLSNALRNYSCLIRFFLDNERLLIGDDLDRRLMEAIEESRTAIVVLSQNYSTSRWCLR 79

Query: 61  ELVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETI-YNLEEEVEQWREAL 120
           EL KI+E MDD TNRV+PVFYHVDPS VR+QS  F+ SF  YE    + +E+V +WR+A 
Sbjct: 80  ELEKIMESMDDGTNRVLPVFYHVDPSHVRHQSGPFERSFVEYENNGQDSQEQVHRWRDAF 139

Query: 121 TRVGHLVGVVVRKD 133
            RVGHL GVVV K+
Sbjct: 140 ARVGHLAGVVVNKN 153

[Close]

BLAST of Lsi08G001190 vs. TAIR 10
Match: AT1G72840.1 (Disease resistance protein (TIR-NBS-LRR class) )

HSP 1 Score: 107.8 bits (268), Expect = 6.6e-24
Identity = 54/126 (42.86%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           + +LY  L N G++ TF D+ +L +GD +++ L K I+ S  ++V+LSENY +S WCL E
Sbjct: 31  VSHLYVALRNNGVL-TFKDDRKLEIGDTIADGLVKAIQTSWFAVVILSENYATSTWCLEE 90

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETIYNLEEEVEQWREALTR 120
           L  I++   +   +V+P+FY V PSDVR Q  +F  +F  YE    +EE+V +WR ALT+
Sbjct: 91  LRLIMQLHSEEQIKVLPIFYGVKPSDVRYQEGSFATAFQRYEADPEMEEKVSKWRRALTQ 150

Query: 121 VGHLVG 127
           V +L G
Sbjct: 151 VANLSG 155

[Close]

BLAST of Lsi08G001190 vs. TAIR 10
Match: AT1G72840.2 (Disease resistance protein (TIR-NBS-LRR class) )

HSP 1 Score: 107.8 bits (268), Expect = 6.6e-24
Identity = 54/126 (42.86%), Postives = 82/126 (65.08%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           + +LY  L N G++ TF D+ +L +GD +++ L K I+ S  ++V+LSENY +S WCL E
Sbjct: 31  VSHLYVALRNNGVL-TFKDDRKLEIGDTIADGLVKAIQTSWFAVVILSENYATSTWCLEE 90

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETIYNLEEEVEQWREALTR 120
           L  I++   +   +V+P+FY V PSDVR Q  +F  +F  YE    +EE+V +WR ALT+
Sbjct: 91  LRLIMQLHSEEQIKVLPIFYGVKPSDVRYQEGSFATAFQRYEADPEMEEKVSKWRRALTQ 150

Query: 121 VGHLVG 127
           V +L G
Sbjct: 151 VANLSG 155

[Close]

BLAST of Lsi08G001190 vs. TAIR 10
Match: AT1G27170.1 (transmembrane receptors;ATP binding )

HSP 1 Score: 105.1 bits (261), Expect = 4.3e-23
Identity = 53/131 (40.46%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 3   YLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRELV 62
           +LY+ L +   +  F D   +  GD +S  L+  +E+S  S++V+S NY  S+WCL EL 
Sbjct: 32  HLYKALKD--KVRVFRDNEGMERGDEISSSLKAGMEDSAASVIVISRNYSGSRWCLDELA 91

Query: 63  KIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETIYNLE-EEVEQWREALTRV 122
            + +       R++P+FYHVDPS VR QS   K+ F+ ++  ++ E E+V++WREALT V
Sbjct: 92  MLCKMKSSLDRRILPIFYHVDPSHVRKQSDHIKKDFEEHQVRFSEEKEKVQEWREALTLV 151

Query: 123 GHLVGVVVRKD 133
           G+L G V  KD
Sbjct: 152 GNLAGYVCDKD 160

[Close]

BLAST of Lsi08G001190 vs. TAIR 10
Match: AT1G64070.1 (Disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 100.9 bits (250), Expect = 8.1e-22
Identity = 57/127 (44.88%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           + +  +  NN G+  T  D+  +L G+ +S  L + I ESRISIV+LS+NY SS WCL E
Sbjct: 30  LSHFRKQFNNNGI--TMFDDQRILRGETISPALTQAIRESRISIVLLSKNYASSGWCLDE 89

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYET-IYNLEEEVEQWREALT 120
           L++I++C DD    V+ VFY VDPSDVR Q+  F  +F+  ET     EEE ++W +AL 
Sbjct: 90  LLEILKCKDDMGQIVMTVFYGVDPSDVRKQTGEFGIAFN--ETCACRTEEERQKWSQALN 149

Query: 121 RVGHLVG 127
            VG++ G
Sbjct: 150 YVGNIAG 152

[Close]

BLAST of Lsi08G001190 vs. TAIR 10
Match: AT1G17600.1 (Disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-20
Identity = 54/128 (42.19%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 1   MGYLYETLNNLGMITTFVDEHELLVGDRLSERLEKTIEESRISIVVLSENYGSSKWCLRE 60
           + +LY  L++ G I TF D+  L +GD +S+ L + +  S  ++VVLSENY +S+WCL E
Sbjct: 28  VSHLYAALDSRG-IVTFKDDQRLEIGDHISDELHRALGSSSFAVVVLSENYATSRWCLLE 87

Query: 61  LVKIIECMDDRTNRVVPVFYHVDPSDVRNQSRTFKESFDVYETIYNLEEEVEQWREALTR 120
           L  I+E M +    V P+FY VDPS VR+Q  +F  S   Y+ +  + ++V +WREAL  
Sbjct: 88  LQLIMELMKEGRLEVFPIFYGVDPSVVRHQLGSF--SLVKYQGL-EMVDKVLRWREALNL 147

Query: 121 VGHLVGVV 129
           + +L GVV
Sbjct: 148 IANLSGVV 151

The following BLAST results are available for this feature:

BLAST of Lsi08G001190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40392	1.0e-24	46.21	TMV resistance protein N OS=Nicotiana glutinosa OX=35889 GN=N PE=1 SV=1	[more]
V9M2S5	1.1e-23	47.33	Disease resistance protein RPV1 OS=Vitis rotundifolia OX=103349 GN=RPV1 PE=1 SV=...	[more]
V9M398	4.6e-22	47.24	Disease resistance protein RUN1 OS=Vitis rotundifolia OX=103349 GN=RUN1 PE=1 SV=...	[more]
A0A290U7C4	3.9e-21	45.67	Disease resistance protein Roq1 OS=Nicotiana benthamiana OX=4100 GN=ROQ1 PE=1 SV...	[more]
F4I594	1.1e-20	44.88	Disease resistance protein RML1A OS=Arabidopsis thaliana OX=3702 GN=RLM1A PE=3 S...	[more]

BLAST of Lsi08G001190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CK85	1.9e-34	57.14	TMV resistance protein N-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1CJ23	1.9e-34	57.14	TMV resistance protein N-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A1S3CAY9	7.9e-33	58.21	TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498655...	[more]
A0A1S3CAK4	7.9e-33	58.21	TMV resistance protein N-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103498655...	[more]
A0A1S3CAG4	7.9e-33	58.21	TMV resistance protein N-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103498655...	[more]

BLAST of Lsi08G001190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890296.1	1.2e-38	64.12	TMV resistance protein N-like [Benincasa hispida]	[more]
XP_022141771.1	3.9e-34	57.14	TMV resistance protein N-like isoform X2 [Momordica charantia]	[more]
XP_022141770.1	3.9e-34	57.14	TMV resistance protein N-like isoform X1 [Momordica charantia]	[more]
XP_008459558.1	1.6e-32	58.21	PREDICTED: TMV resistance protein N-like isoform X4 [Cucumis melo]	[more]
XP_008459552.1	1.6e-32	58.21	PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo] >XP_008459553...	[more]

BLAST of Lsi08G001190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72840.1	6.6e-24	42.86	Disease resistance protein (TIR-NBS-LRR class)	[more]
AT1G72840.2	6.6e-24	42.86	Disease resistance protein (TIR-NBS-LRR class)	[more]
AT1G27170.1	4.3e-23	40.46	transmembrane receptors;ATP binding	[more]
AT1G64070.1	8.1e-22	44.88	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G17600.1	1.5e-20	42.19	Disease resistance protein (TIR-NBS-LRR class) family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	SMART	SM00255	till_3	coord: 2..124 e-value: 2.1E-17 score: 73.8
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PFAM	PF01582	TIR	coord: 5..120 e-value: 2.4E-31 score: 108.9
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PROSITE	PS50104	TIR	coord: 1..133 score: 27.610275
IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	GENE3D	3.40.50.10140		coord: 1..133 e-value: 1.2E-44 score: 154.0
IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	SUPERFAMILY	52200	Toll/Interleukin receptor TIR domain	coord: 3..126
None	No IPR available	PANTHER	PTHR32009:SF84	TOLL/INTERLEUKIN-LIKE RECEPTOR-PROTEIN	coord: 1..130
None	No IPR available	PANTHER	PTHR32009	TMV RESISTANCE PROTEIN N-LIKE	coord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G001190.1	Lsi08G001190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0003953	NAD+ nucleosidase activity