Lsi08G000510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G000510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Zinc finger and BTB domain-containing protein 11 isoform 2
Location	chr08: 1215734 .. 1221955 (-)
RNA-Seq Expression	Lsi08G000510
Synteny	Lsi08G000510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATTCTAGACGGCGACAGTCCTCTCATCTCTCAGTCATCGATTGAACTGAACCTCGCCGGAGAGACAGGAGGGAAATTTCGGAAATTTTTAATGGGCCTGGGCCGTAAAGTCTTGTCCAAACACTCCTTAAACCTCAGAGTGCCAAAACCGGCGTAGGAATGTAACTATCCAGATAAGGGGCGTGCTATCCAGGTTTCCAAACGGGGTCCCTATCGTATCTTGTACAAGTTCTTTGCTCTTTACGGTTGTCTCGAGAATTTTGGGTTGGGCGAAAATGGCGAAGAAGAAGCAGTTGGCATCTTCAGCTCCATGGCGGGGGGAGGAGGAAGTGGATGAGTTCGCCGGAGCAAAGCTCAAAGTGACTAAGAATCCTGGTGAGACTTCGGTAATGCACGTTCCTCGTAAGAAGAGCGTCAAGTCCAAGAGCTCAAAAGAAGAGGAGGATTCCCTCGAGATTGACCCTGAGCTCCGCTACAGTTTTCAACGCAATTACCAGGTTTAATTCTCTTAACGTCGACTGTGTTTGGATGATGAGACTGTTGTAAGTGTTTCAATGGAGTTCTCATGTGAATTATTGTGCGTATTTTGTCACCTAATTCATCTTTTCTTGTCTGTTCGTAGCTGTTGTATGTATGGTATTCTTTTTTCCTTTTCATCTGCATTCGTTTTCTAATTTTTCCAAGATAACCTTCCTTCTGGCATAGATTTTACTAGTTAGATTGTAGGATTGTCTAGAAGCAATCTGCTCTTTGATTACTGACTTCCAAGTTCATGCTGACAAGCATACTAGGCCTCTTAGTCATCATAATTGGAGTGCCCATGGAAAGTTTTCACAAGAAACAGCTAGAAAGTTCAAAACAAAACCTCAACGAATTGTTTCTTTACCAAGTGTTGGAGGACCTTTGGGTGATAAGTCATAGGATGATACTAAATGGACATAGAGATGTGGATGTAGAAGAGAAGTTGACTGGAAGAAAATAGAGACGTAGGTGGCTTGGTCCAATCAAATGAGAGTGCATTAATATCTGGTGGAGTTGGCAGCTTGATAAGATAATAGATGAAATGATGATAGTTCCAAGGAAGGAGATCGAAGAGGCTGGAGCCAAAGTGAGCTTAGCTAAGTGGCATGTACTACCTCTCTTGAGTTTGGAGGTTCAAATCTCTTCTACCTCCATTATTGTACTAAAAATAAATAAATTGAAGAGGCTAATTTGTCAATTGTACCTTTAATGATCAAGGAAGTGGACTTAATGGTAAGTGGCGTTGTTAGGGAAGGTGAATGCGTGGTGGCTCTGATGTTGTCAATAGAAGTTTGATTGAGAGGGGTGCAGATTATTCTAAAGTAACTGATGTTAGGTTTGCTTTGAATTATTCAAAGGTCACTATTAATGAAGCAACTTCTTACAATGAGGATGACATTTATTTGGCGGGCTTTAGTTGCGCTGATGATAGTTTGACTGTAGAATTTGTTTTGCTCAAGATTGATTTTGGTGAAAGTATTAATGGGGTCAACAAAAAACGAGAAGAAATTTACTATTGGACAACGGAAAAGCAGAGAAAAAGATAAAGCATTAAATGAAAATGAAAGAAGTGGAGAGGGTAGTGGAAATCCAGGAAACGAGATGGTTGGCAATTCAACAAGGGGGTCTCTACGGGTTATAAAAATGAAAGTATGAATGAAGTAGAGCCAACTGCGAACTCTGTTTAATGATTTGCTCGGTTTTCCTTAAATTTGGGCTTTAGAAGATAGAAGATTTCCTCGCTTCCTCTTATTTTAATCCATTCTAAATTATGAAGGGAAAATCTCTCTTGTCATGCAAGGCAGAAGTACTTGGCGAACTTGAGGTTGTAGAACCAGCATTTACAGAGTTGCCTACTGATGAATCACCTGAAGGGTTTACAGAGTCACCTACTGAAAAATTACCTGAAGGGAATCATGCCTACACACTCGAGCTTAGGAAGGAAGGGTTCCTAGGCAACTTCTTTCCTAGAAGTAGTTCTACTTCGCTTTACATTGAGCTTCACCCCCAGCGGTTAATGAATGGTATACAGGCTACTCTGAGTGCGGCATTACAACGTCACTATAAACTCAAAGGTAATCTGAACTATGAGATGTCGATGACTGAGTTTGAACAAATGGCTGCAGTTCTCGCCACTGGCTGTATGGTAATGGCATATGTGAAGTGCCGTGCAGTTATTCTCACTAATGGGTCGTCTCATTTGTGGGATTCTAATAGGTTGAAAATGCCAAGGATAACCTCAGATCTCATGATCCCAACCCCGCTTGCCTTTGCTATTCAACAATTGGGATTTGTGGACGTTGATGACCTTCATATTAGGTTAAAGGCTGTCCCATACTTTCCAAGTGCAGGCACACCTTTGGTGTCCCCAATGGGTTTACGTGAAACAACGTTGAGTACTTACATGCAGTTGAATATGCAAGAAGGTTAGGCATGCAATTTAGCATTGTGAACCCAAAAGTGAAGTGTGGGTCGGCCTGGTGGCTATTTAAGCAAGCGTTCTCTGAAGGTATTTTTGAACTGCGATGTCCTTTACCAGAAACCAACTTTACCGAGTCAATGGCAGTGACTCACACACTATTTTTGTCTGGAACTCAACCCAACATGTCCAGCTATTGCTGACCTGACTCCACCTGGGACCGACAATTATGGTTATATGCTGTTTAACCCACACATTGGCATCAACATCAATTCTTATGGAGCCTTTTCAAATGTAGTCTTTGAAGATTGGAGTAGTATTTAACTTTACCAGGATTTTAGTTATGAATTGATAATATGGATGAATCTTACTCAAGTCTATGGAGATGTTTGTTCTTATTTTGTTATTTTATTTATTTATTTATTTTATTATTAATATGATAAAAAGACCAATTTTCATTGAGAAAAAATGAAAGAATATAAGGACATACAAAAAGAAGACCTAGTGAATAATTACAAAAAGAACTCATAACCAATGCCTAATGGCTACTAGAGACATTAAATATCTTAAAGGATGATAAGGCAATCCTAACCTTCAACCCAAAGATTCAAGCTATTGATGAAGCAGGAACCATTTGAAACTAAGAAATTAACACCTCCCTATGCAAATTTAGATCAACCCCGGAAAAAAGGCTAGACTTAGATTACCTCTTGATCGAAGATCTAGAAGCAAGATTCGAAAATCTTGTTCTAAATTGAGTCACTCCACAATCAAACTTGATCAATGTTAGATTGAATGGCTCGCATGCATTCTATCACAAGAACTGCAAATTCTAAGGGAAAAGTCTCAATGTGAGATCTCAAATTTCATTAATCAAAAGTCTTGTTACAAATGAAAGGGGTAGAAGGCTTTATATAGTCTTGTAGAGATTCTATCCTATTTAATGTAAATTACAAAAAGTCAAAATAAAACATTAAAGGAGTTCTCCATCTACCAACTATTATCTTCCAACCACCATCTTTAATGTAAACTCCATTAATGACAACCACCATCTTCCAACTACCATATTTAATGCATTTCTTTTAGAAACATTTACTAGACATAAAATTAAAAGAAGCTAGAACATTACAATCAAAATATGCTAAGATAACTAAAGAAGTCTTCCAAAATGTTTGGACTCATGGAAATTAAATATCTACTCCATAGTCAACTTCAATCGAGCAAACATTGATCTTCAATACTCCAAATGGGCCTTCATCTCTTGGATTAGCATGTAGCACTCGAAATTGAGGACTGAACCGACTCTATCCAATCTTGAACGTGAAGAAGGAATGATTGTTGAATATTTGTTGCCTTGGATCTTGTAATTGGTCCGACCGGAACGTGTGGAACACCATGATTCTTATCAAAGGACTAAACAACAGCCTCTTTTACGGTCCATGATTTTTTTATCTTTGTTTCATTTTGTTTACTGTTATTTAGATTCTGTTTGAAACTTTGAATATTTTCTTTATTTTTGTCATTCAATTAATTGGTTAGTGGATTCCTACAATAATGGAAATTAAATAATGACTTTGTTTCAGGGAAATTTATGGAAGTGGGTAGTTTTAGATTTTTTAGTTAAATAGGACAAAAGTGGAGAGAAGGGAGGGGAGAATTTTGACGTTAACTCATCTCTTGGTTGATCGGGAGGTTGACATTCCTCAAAAATCCTGAAAGGAGGTTTAGACTCCCTCACAATTATCCCTTTTATTTTCAATTTCTTTCCTTCTATTTTCTTTTATCTCTATTTCGAAATTGGGTCCATAACAGCCTCCTTCTCAATCCCTCTAAAAATTATGTTATTTCTCTTCCTCCAAATATCCCACAACAACACACATCGACTTTCCATAAAAAAACTTGCGTTCTCCCAGAACTGCAGATGGAGGAACATCTGTTTTCATTTTGTTGTTTAAATGTCGAACATGAAATGTTTTAGAAAAAATGTCTAATTTTTTTCTTTTTTTTTTTTTTTTCTAAGTTTTAAAAATAGAAAAATAAAAAAAACTATTTACACAAAATAGCAAAATTTTTAAATAGTTGTGATAGACGCTGATAGAAGTCTATCAGGATCTATCGATGATAGAAATGATAGAAGTCTATCACTGATAGGATAGATGCTGATAGAAGTCTATCAATATCTATCAGTATTTTTTTTGCTATTTTATGTAAATAATTTGACATTTTTTTATTTGTGAAAATTTCCCGTACTTTTATTATCTTTAATTTAGAAGGAGTATAATGGCATGATATCTTCTAGTTTAGACAATCATGAACACACCAAATTATAGATTTTGATTGACTTAAAGTGCTTTCCTTATTCATTAGGAAGTAAATAACCTTGGAAATACTTTTGTATTAAATTATGAAATTGTTTCTAACAAATTGCTAGTTCTTAAAATTTTGTGGTGCAGTTTCTTCAACGAGTATTTAGCATTGACACGATTGTGAAACCTCTTCCACCAGCCATGGCTTACAATGTCTCCCGGAACTTGCATTTCTTCACTCGAATTTTTACACAGTTCTTTGGTATGTTCTTTTTTTACTTTTTATTTTTCCTTTTGTTTGCAGGTTTGGATTTGCACTCCACACGGGCACAAAATTATTTTCTACACTCAATCACATCCAAAAAGTTTATTATATCACTGTTTTTCCATTGTCTGGAAACCTATATAGATGAGCTGGAAGAACAAATTGTTATCAAAGGATATATTGATTGCTTGGTTAGGTGTACAATGATTCTGATTTCTGGTTTTGGTTAAAATAACAAAAAATAATGATTCCAAGTTCTCAGTTTGTCTTGTTTAGATTGCTTTTCAATATGAATCATCAGAAGTATATTCTTTCTGTGTTGAAGGAGAGGGCACCACCATTTGATATCTATATATTCTGAGGATTTCCATAAGCACATTTATTTACCTGTATGAATATTTGGGTTTTTATGTGCAAGAGACGTCAAAAGGTATAGTATTTTCTGCGAGGAAAAGAAACCTTCTGACACTTTATCATGGCATACATGCTGTATTACCATGGCAATTGTAATGAAATCATCTGTTGCCATTATTCAATATTTTGTTCACTAACACATCTGATCCCATACCAGACCCTGAAGGCATTGCAAATGCTCAGAAATCACTAGGCCTGGGGCAGGAAGAGAAAGCTCGCCGCGTTCGTTAAGTGGAGAAGGGAAATGGCTGGGAATTTGATGCATTATCTGTAATCAAGTGTATTTGGATTCAAACATTGTGAAGAGTTGTTGTAAATGGGATGCATTATGCATAAATTTTGTCCAACTTCAAGTTTAATTACATCAGTTGGGTTGTTGAAAATTTACTCTACCAGAACCGGAATACACAAGAAAAACTGTTGCTAGGCATCTTTCTCCTAGAGAACTCACAACTCCATAGCCTAGCCCCTTTTGGCTGGCCAAGAAACCCAGAAAAGTGCTAAAAATATTGCCTATTCCTGTTCAGGTCTCTGGGTACCCCCACGCCAGTAGCCCCATTTACTCAGTCCACATTCTGATAGAAATTTTTCGTAATCCTGGTCCAGTTTCTTGTAAGCATGTGATAAATCTTCTACTGAGATCTGTTCATCTTCTGGACTCTGCAAAACAATAACTATAAACTATTACCAAATTGTGAACTTTTGGCTGGAATGGAGACTAGAAAACAAATTATGACTCCCAAAGTTTGAATCAAAGCTAATACGTGCAGCTCTCTCTCTCTCTCTCTCTCTCTCT

mRNA sequence

TGATTCTAGACGGCGACAGTCCTCTCATCTCTCAGTCATCGATTGAACTGAACCTCGCCGGAGAGACAGGAGGGAAATTTCGGAAATTTTTAATGGGCCTGGGCCGTAAAGTCTTGTCCAAACACTCCTTAAACCTCAGAGTGCCAAAACCGGCGTAGGAATGTAACTATCCAGATAAGGGGCGTGCTATCCAGGTTTCCAAACGGGGTCCCTATCGTATCTTGTACAAGTTCTTTGCTCTTTACGGTTGTCTCGAGAATTTTGGGTTGGGCGAAAATGGCGAAGAAGAAGCAGTTGGCATCTTCAGCTCCATGGCGGGGGGAGGAGGAAGTGGATGAGTTCGCCGGAGCAAAGCTCAAAGTGACTAAGAATCCTGGTGAGACTTCGGTAATGCACGTTCCTCGTAAGAAGAGCGTCAAGTCCAAGAGCTCAAAAGAAGAGGAGGATTCCCTCGAGATTGACCCTGAGCTCCGCTACAGTTTTCAACGCAATTACCAGGGAAAATCTCTCTTGTCATGCAAGGCAGAAGTACTTGGCGAACTTGAGGTTGTAGAACCAGCATTTACAGAGTTGCCTACTGATGAATCACCTGAAGGGTTTACAGAGTCACCTACTGAAAAATTACCTGAAGGGAATCATGCCTACACACTCGAGCTTAGGAAGGAAGGGTTCCTAGGCAACTTCTTTCCTAGAAGTAGTTCTACTTCGCTTTACATTGAGCTTCACCCCCAGCGGTTAATGAATGGTATACAGGCTACTCTGAGTGCGGCATTACAACGTCACTATAAACTCAAAGGTAATCTGAACTATGAGATGTCGATGACTGAGTTTGAACAAATGGCTGCAGTTCTCGCCACTGGCTGTATGGTAATGGCATATGTGAAGTGCCGTGCAGTTATTCTCACTAATGGGTCGTCTCATTTGTGGGATTCTAATAGGTTGAAAATGCCAAGGATAACCTCAGATCTCATGATCCCAACCCCGCTTGCCTTTGCTATTCAACAATTGGGATTTGTGGACGTTGATGACCTTCATATTAGGTTAAAGGCTGTCCCATACTTTCCAAGTGCAGGCACACCTTTGGTGTCCCCAATGGGTTTACGTGAAACAACGTTGAGTACTTACATGCAGTTGAATATGCAAGAAGCTATTGCTGACCTGACTCCACCTGGGACCGACAATTATGGTTATATGCTGTTTAACCCACACATTGGCATCAACATCAATTCTTATGGAGCCTTTTCAAATTTTCTTCAACGAGTATTTAGCATTGACACGATTGTGAAACCTCTTCCACCAGCCATGGCTTACAATGTCTCCCGGAACTTGCATTTCTTCACTCGAATTTTTACACAGTTCTTTGACCCTGAAGGCATTGCAAATGCTCAGAAATCACTAGGCCTGGGGCAGGAAGAGAAAGCTCGCCGCGTTCGTTAAGTGGAGAAGGGAAATGGCTGGGAATTTGATGCATTATCTGTAATCAAGTGTATTTGGATTCAAACATTGTGAAGAGTTGTTGTAAATGGGATGCATTATGCATAAATTTTGTCCAACTTCAAGTTTAATTACATCAGTTGGGTTGTTGAAAATTTACTCTACCAGAACCGGAATACACAAGAAAAACTGTTGCTAGGCATCTTTCTCCTAGAGAACTCACAACTCCATAGCCTAGCCCCTTTTGGCTGGCCAAGAAACCCAGAAAAGTGCTAAAAATATTGCCTATTCCTGTTCAGGTCTCTGGGTACCCCCACGCCAGTAGCCCCATTTACTCAGTCCACATTCTGATAGAAATTTTTCGTAATCCTGGTCCAGTTTCTTGTAAGCATGTGATAAATCTTCTACTGAGATCTGTTCATCTTCTGGACTCTGCAAAACAATAACTATAAACTATTACCAAATTGTGAACTTTTGGCTGGAATGGAGACTAGAAAACAAATTATGACTCCCAAAGTTTGAATCAAAGCTAATACGTGCAGCTCTCTCTCTCTCTCTCTCTCTCTCT

Coding sequence (CDS)

ATGGCGAAGAAGAAGCAGTTGGCATCTTCAGCTCCATGGCGGGGGGAGGAGGAAGTGGATGAGTTCGCCGGAGCAAAGCTCAAAGTGACTAAGAATCCTGGTGAGACTTCGGTAATGCACGTTCCTCGTAAGAAGAGCGTCAAGTCCAAGAGCTCAAAAGAAGAGGAGGATTCCCTCGAGATTGACCCTGAGCTCCGCTACAGTTTTCAACGCAATTACCAGGGAAAATCTCTCTTGTCATGCAAGGCAGAAGTACTTGGCGAACTTGAGGTTGTAGAACCAGCATTTACAGAGTTGCCTACTGATGAATCACCTGAAGGGTTTACAGAGTCACCTACTGAAAAATTACCTGAAGGGAATCATGCCTACACACTCGAGCTTAGGAAGGAAGGGTTCCTAGGCAACTTCTTTCCTAGAAGTAGTTCTACTTCGCTTTACATTGAGCTTCACCCCCAGCGGTTAATGAATGGTATACAGGCTACTCTGAGTGCGGCATTACAACGTCACTATAAACTCAAAGGTAATCTGAACTATGAGATGTCGATGACTGAGTTTGAACAAATGGCTGCAGTTCTCGCCACTGGCTGTATGGTAATGGCATATGTGAAGTGCCGTGCAGTTATTCTCACTAATGGGTCGTCTCATTTGTGGGATTCTAATAGGTTGAAAATGCCAAGGATAACCTCAGATCTCATGATCCCAACCCCGCTTGCCTTTGCTATTCAACAATTGGGATTTGTGGACGTTGATGACCTTCATATTAGGTTAAAGGCTGTCCCATACTTTCCAAGTGCAGGCACACCTTTGGTGTCCCCAATGGGTTTACGTGAAACAACGTTGAGTACTTACATGCAGTTGAATATGCAAGAAGCTATTGCTGACCTGACTCCACCTGGGACCGACAATTATGGTTATATGCTGTTTAACCCACACATTGGCATCAACATCAATTCTTATGGAGCCTTTTCAAATTTTCTTCAACGAGTATTTAGCATTGACACGATTGTGAAACCTCTTCCACCAGCCATGGCTTACAATGTCTCCCGGAACTTGCATTTCTTCACTCGAATTTTTACACAGTTCTTTGACCCTGAAGGCATTGCAAATGCTCAGAAATCACTAGGCCTGGGGCAGGAAGAGAAAGCTCGCCGCGTTCGTTAA

Protein sequence

MAKKKQLASSAPWRGEEEVDEFAGAKLKVTKNPGETSVMHVPRKKSVKSKSSKEEEDSLEIDPELRYSFQRNYQGKSLLSCKAEVLGELEVVEPAFTELPTDESPEGFTESPTEKLPEGNHAYTLELRKEGFLGNFFPRSSSTSLYIELHPQRLMNGIQATLSAALQRHYKLKGNLNYEMSMTEFEQMAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNRLKMPRITSDLMIPTPLAFAIQQLGFVDVDDLHIRLKAVPYFPSAGTPLVSPMGLRETTLSTYMQLNMQEAIADLTPPGTDNYGYMLFNPHIGININSYGAFSNFLQRVFSIDTIVKPLPPAMAYNVSRNLHFFTRIFTQFFDPEGIANAQKSLGLGQEEKARRVR

Homology

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BLAST of Lsi08G000510 vs. ExPASy TrEMBL
Match: A0A5D3BKU9 (Putative coat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00450 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-43
Identity = 117/242 (48.35%), Postives = 131/242 (54.13%), Query Frame = 0


Query: 102 DESPEGFTESPTEKLPEGNHAYTLELRKEGFLGNFFPRSSSTSLYIELHPQRLMNGIQAT 161
           DES E F ES T++LP GNHAY LELR+ G LGNFFPR SST+  IELHPQRLM G    
Sbjct: 2   DESSEEFPESSTDELPLGNHAYALELRQAGVLGNFFPRRSSTTYLIELHPQRLMTG---- 61

Query: 162 LSAALQRHYKLKGNLNYEMSMTEFEQMAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNR 221
                                  F  +A                          +W    
Sbjct: 62  -------------------KWLLFLPLA--------------------------VW---- 121

Query: 222 LKMPRITSDLMIPTPLAFAIQQLGFVDVDDLHIRLKAVPYFPSAGTPLVSPMGLRETTLS 281
           +KMP ITSDLMIP+P AF+IQQLG+VDVDDL+I LK VPYFPS G       GLR TT++
Sbjct: 122 VKMPMITSDLMIPSPFAFSIQQLGYVDVDDLNILLKVVPYFPSDG----HTFGLRGTTMN 181

Query: 282 TYMQLNMQE-------------------------AIADLTPPGTDNYGYMLFNPHIGINI 319
           TYM LNMQE                         AIADLTP GTDNYGYMLFNPHIGINI
Sbjct: 182 TYMLLNMQEETNFTETMAVIHTLFLSGTQPNMTNAIADLTPLGTDNYGYMLFNPHIGINI 186

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BLAST of Lsi08G000510 vs. ExPASy TrEMBL
Match: A0A1S3CAR5 (uncharacterized protein LOC103498698 OS=Cucumis melo OX=3656 GN=LOC103498698 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.7e-38
Identity = 102/200 (51.00%), Postives = 112/200 (56.00%), Query Frame = 0


Query: 188 MAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNRLKMPRITSDLMIPTPLAFAIQQLGFV 247
           MAAVLATGCMVMAY+KCRA++L  G  HL DSNR+KMP ITSDLMIP+P AF+IQQLG+V
Sbjct: 1   MAAVLATGCMVMAYLKCRALVLAKG-FHLCDSNRVKMPMITSDLMIPSPFAFSIQQLGYV 60

Query: 248 DVDDLHIRLKAVPYFPSAGTPLVSPMG--------------------------------- 307
           DVDDL+I LK VPYFPS G     P G                                 
Sbjct: 61  DVDDLNILLKVVPYFPSDGHTFGVPNGFTWNNDEYIHAVEYARRLGMHFSIVYPKVKCGS 120

Query: 308 -------------------LRETTLSTYM-----------QLNMQEAIADLTPPGTDNYG 325
                              L ET  +  M           Q NM  AIADLTP GTDNYG
Sbjct: 121 AWWLFKQEFSEGIFKLQCPLPETNFTETMAVIHTLFLSGTQPNMTNAIADLTPLGTDNYG 180

[Close]

BLAST of Lsi08G000510 vs. ExPASy TrEMBL
Match: A0A1S3CAM9 (uncharacterized protein LOC103498699 OS=Cucumis melo OX=3656 GN=LOC103498699 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-35
Identity = 132/386 (34.20%), Postives = 135/386 (34.97%), Query Frame = 0


Query: 1   MAKKKQLASSAPWRGEEEVDEFAGAKLKVTKNPGETSVMHVPRKKSVKSKSSKEEEDSLE 60
           MAKKKQLASSAPWRGEEEVDEFA AKLKVTKNPGETSVMHVPRKKSVKSKS+KEE+DSLE
Sbjct: 1   MAKKKQLASSAPWRGEEEVDEFAEAKLKVTKNPGETSVMHVPRKKSVKSKSTKEEDDSLE 60

Query: 61  IDPELRYSFQRNYQGKSLLSCKAEVLGELEVVEPAFTELPTDESPEGFTESPTEKLPEGN 120
           IDPELRYSFQRNYQ                                              
Sbjct: 61  IDPELRYSFQRNYQ---------------------------------------------- 120

Query: 121 HAYTLELRKEGFLGNFFPRSSSTSLYIELHPQRLMNGIQATLSAALQRHYKLKGNLNYEM 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 136

Query: 181 SMTEFEQMAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNRLKMPRITSDLMIPTPLAFA 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 136

Query: 241 IQQLGFVDVDDLHIRLKAVPYFPSAGTPLVSPMGLRETTLSTYMQLNMQEAIADLTPPGT 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 136

Query: 301 DNYGYMLFNPHIGININSYGAFSNFLQRVFSIDTIVKPLPPAMAYNVSRNLHFFTRIFTQ 360
                                   FLQRVFSIDTIVKPLPPAMAYNVSRNL+FFTRIFTQ
Sbjct: 301 ------------------------FLQRVFSIDTIVKPLPPAMAYNVSRNLNFFTRIFTQ 136

Query: 361 FFDPEGIANAQKSLGLGQEEKARRVR 387
           FFDPEGIANAQKSLGLGQEEKARRVR
Sbjct: 361 FFDPEGIANAQKSLGLGQEEKARRVR 136

[Close]

BLAST of Lsi08G000510 vs. ExPASy TrEMBL
Match: A0A6J1CLF2 (uncharacterized protein LOC111012033 OS=Momordica charantia OX=3673 GN=LOC111012033 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.8e-35
Identity = 132/386 (34.20%), Postives = 134/386 (34.72%), Query Frame = 0


Query: 1   MAKKKQLASSAPWRGEEEVDEFAGAKLKVTKNPGETSVMHVPRKKSVKSKSSKEEEDSLE 60
           MAKKKQLASSAPWRGEEEVDEFA AKLKVTKNPGET VMHVPRKKSVKSKSSKEE+DSLE
Sbjct: 1   MAKKKQLASSAPWRGEEEVDEFADAKLKVTKNPGETPVMHVPRKKSVKSKSSKEEDDSLE 60

Query: 61  IDPELRYSFQRNYQGKSLLSCKAEVLGELEVVEPAFTELPTDESPEGFTESPTEKLPEGN 120
           IDPELRYSFQRNYQ                                              
Sbjct: 61  IDPELRYSFQRNYQ---------------------------------------------- 120

Query: 121 HAYTLELRKEGFLGNFFPRSSSTSLYIELHPQRLMNGIQATLSAALQRHYKLKGNLNYEM 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 136

Query: 181 SMTEFEQMAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNRLKMPRITSDLMIPTPLAFA 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 136

Query: 241 IQQLGFVDVDDLHIRLKAVPYFPSAGTPLVSPMGLRETTLSTYMQLNMQEAIADLTPPGT 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 136

Query: 301 DNYGYMLFNPHIGININSYGAFSNFLQRVFSIDTIVKPLPPAMAYNVSRNLHFFTRIFTQ 360
                                   FLQRVFSIDTIVKPLPPAMAYNVSRNL+FFTRIFTQ
Sbjct: 301 ------------------------FLQRVFSIDTIVKPLPPAMAYNVSRNLNFFTRIFTQ 136

Query: 361 FFDPEGIANAQKSLGLGQEEKARRVR 387
           FFDPEGIANAQKSLGLGQEEKARRVR
Sbjct: 361 FFDPEGIANAQKSLGLGQEEKARRVR 136

[Close]

BLAST of Lsi08G000510 vs. ExPASy TrEMBL
Match: A0A0A0KW70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650520 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-34
Identity = 130/386 (33.68%), Postives = 134/386 (34.72%), Query Frame = 0


Query: 1   MAKKKQLASSAPWRGEEEVDEFAGAKLKVTKNPGETSVMHVPRKKSVKSKSSKEEEDSLE 60
           MAKKKQLASSAPWRGEEEVDEFAGAK+KVTKNPGETSVMHVPRKKSVKSKS+KEE+DSLE
Sbjct: 1   MAKKKQLASSAPWRGEEEVDEFAGAKVKVTKNPGETSVMHVPRKKSVKSKSTKEEDDSLE 60

Query: 61  IDPELRYSFQRNYQGKSLLSCKAEVLGELEVVEPAFTELPTDESPEGFTESPTEKLPEGN 120
           IDPELRYSFQRNYQ                                              
Sbjct: 61  IDPELRYSFQRNYQ---------------------------------------------- 120

Query: 121 HAYTLELRKEGFLGNFFPRSSSTSLYIELHPQRLMNGIQATLSAALQRHYKLKGNLNYEM 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 136

Query: 181 SMTEFEQMAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNRLKMPRITSDLMIPTPLAFA 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 136

Query: 241 IQQLGFVDVDDLHIRLKAVPYFPSAGTPLVSPMGLRETTLSTYMQLNMQEAIADLTPPGT 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 136

Query: 301 DNYGYMLFNPHIGININSYGAFSNFLQRVFSIDTIVKPLPPAMAYNVSRNLHFFTRIFTQ 360
                                   FLQRVFSIDTIVKPLPPAMAYN SRNL+FFTRIFTQ
Sbjct: 301 ------------------------FLQRVFSIDTIVKPLPPAMAYNASRNLNFFTRIFTQ 136

Query: 361 FFDPEGIANAQKSLGLGQEEKARRVR 387
           FFDPEGIANAQKSLGLGQEEK RRVR
Sbjct: 361 FFDPEGIANAQKSLGLGQEEKDRRVR 136

[Close]

BLAST of Lsi08G000510 vs. NCBI nr
Match: KAA0039255.1 (putative coat protein [Cucumis melo var. makuwa] >TYK00441.1 putative coat protein [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 7.8e-43
Identity = 117/242 (48.35%), Postives = 131/242 (54.13%), Query Frame = 0


Query: 102 DESPEGFTESPTEKLPEGNHAYTLELRKEGFLGNFFPRSSSTSLYIELHPQRLMNGIQAT 161
           DES E F ES T++LP GNHAY LELR+ G LGNFFPR SST+  IELHPQRLM G    
Sbjct: 2   DESSEEFPESSTDELPLGNHAYALELRQAGVLGNFFPRRSSTTYLIELHPQRLMTG---- 61

Query: 162 LSAALQRHYKLKGNLNYEMSMTEFEQMAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNR 221
                                  F  +A                          +W    
Sbjct: 62  -------------------KWLLFLPLA--------------------------VW---- 121

Query: 222 LKMPRITSDLMIPTPLAFAIQQLGFVDVDDLHIRLKAVPYFPSAGTPLVSPMGLRETTLS 281
           +KMP ITSDLMIP+P AF+IQQLG+VDVDDL+I LK VPYFPS G       GLR TT++
Sbjct: 122 VKMPMITSDLMIPSPFAFSIQQLGYVDVDDLNILLKVVPYFPSDG----HTFGLRGTTMN 181

Query: 282 TYMQLNMQE-------------------------AIADLTPPGTDNYGYMLFNPHIGINI 319
           TYM LNMQE                         AIADLTP GTDNYGYMLFNPHIGINI
Sbjct: 182 TYMLLNMQEETNFTETMAVIHTLFLSGTQPNMTNAIADLTPLGTDNYGYMLFNPHIGINI 186

[Close]

BLAST of Lsi08G000510 vs. NCBI nr
Match: XP_008459635.1 (PREDICTED: uncharacterized protein LOC103498698 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 7.5e-38
Identity = 102/200 (51.00%), Postives = 112/200 (56.00%), Query Frame = 0


Query: 188 MAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNRLKMPRITSDLMIPTPLAFAIQQLGFV 247
           MAAVLATGCMVMAY+KCRA++L  G  HL DSNR+KMP ITSDLMIP+P AF+IQQLG+V
Sbjct: 1   MAAVLATGCMVMAYLKCRALVLAKG-FHLCDSNRVKMPMITSDLMIPSPFAFSIQQLGYV 60

Query: 248 DVDDLHIRLKAVPYFPSAGTPLVSPMG--------------------------------- 307
           DVDDL+I LK VPYFPS G     P G                                 
Sbjct: 61  DVDDLNILLKVVPYFPSDGHTFGVPNGFTWNNDEYIHAVEYARRLGMHFSIVYPKVKCGS 120

Query: 308 -------------------LRETTLSTYM-----------QLNMQEAIADLTPPGTDNYG 325
                              L ET  +  M           Q NM  AIADLTP GTDNYG
Sbjct: 121 AWWLFKQEFSEGIFKLQCPLPETNFTETMAVIHTLFLSGTQPNMTNAIADLTPLGTDNYG 180

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BLAST of Lsi08G000510 vs. NCBI nr
Match: XP_038889821.1 (uncharacterized protein LOC120079628 [Benincasa hispida])

HSP 1 Score: 160.2 bits (404), Expect = 3.5e-35
Identity = 132/386 (34.20%), Postives = 134/386 (34.72%), Query Frame = 0


Query: 1   MAKKKQLASSAPWRGEEEVDEFAGAKLKVTKNPGETSVMHVPRKKSVKSKSSKEEEDSLE 60
           MAKKKQLASSAPWRGEEE DEFAGAKLKVTKNPGET VMHVPRKKSVKSKSSKEE+DSLE
Sbjct: 1   MAKKKQLASSAPWRGEEEADEFAGAKLKVTKNPGETPVMHVPRKKSVKSKSSKEEDDSLE 60

Query: 61  IDPELRYSFQRNYQGKSLLSCKAEVLGELEVVEPAFTELPTDESPEGFTESPTEKLPEGN 120
           IDPELRYSFQRNYQ                                              
Sbjct: 61  IDPELRYSFQRNYQ---------------------------------------------- 120

Query: 121 HAYTLELRKEGFLGNFFPRSSSTSLYIELHPQRLMNGIQATLSAALQRHYKLKGNLNYEM 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 136

Query: 181 SMTEFEQMAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNRLKMPRITSDLMIPTPLAFA 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 136

Query: 241 IQQLGFVDVDDLHIRLKAVPYFPSAGTPLVSPMGLRETTLSTYMQLNMQEAIADLTPPGT 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 136

Query: 301 DNYGYMLFNPHIGININSYGAFSNFLQRVFSIDTIVKPLPPAMAYNVSRNLHFFTRIFTQ 360
                                   FLQRVFSIDTIVKPLPPAMAYNVSRNL+FFTRIFTQ
Sbjct: 301 ------------------------FLQRVFSIDTIVKPLPPAMAYNVSRNLNFFTRIFTQ 136

Query: 361 FFDPEGIANAQKSLGLGQEEKARRVR 387
           FFDPEGIANAQKSLGLGQEEKARRVR
Sbjct: 361 FFDPEGIANAQKSLGLGQEEKARRVR 136

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BLAST of Lsi08G000510 vs. NCBI nr
Match: XP_008459636.1 (PREDICTED: uncharacterized protein LOC103498699 [Cucumis melo])

HSP 1 Score: 159.5 bits (402), Expect = 6.0e-35
Identity = 132/386 (34.20%), Postives = 135/386 (34.97%), Query Frame = 0


Query: 1   MAKKKQLASSAPWRGEEEVDEFAGAKLKVTKNPGETSVMHVPRKKSVKSKSSKEEEDSLE 60
           MAKKKQLASSAPWRGEEEVDEFA AKLKVTKNPGETSVMHVPRKKSVKSKS+KEE+DSLE
Sbjct: 1   MAKKKQLASSAPWRGEEEVDEFAEAKLKVTKNPGETSVMHVPRKKSVKSKSTKEEDDSLE 60

Query: 61  IDPELRYSFQRNYQGKSLLSCKAEVLGELEVVEPAFTELPTDESPEGFTESPTEKLPEGN 120
           IDPELRYSFQRNYQ                                              
Sbjct: 61  IDPELRYSFQRNYQ---------------------------------------------- 120

Query: 121 HAYTLELRKEGFLGNFFPRSSSTSLYIELHPQRLMNGIQATLSAALQRHYKLKGNLNYEM 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 136

Query: 181 SMTEFEQMAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNRLKMPRITSDLMIPTPLAFA 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 136

Query: 241 IQQLGFVDVDDLHIRLKAVPYFPSAGTPLVSPMGLRETTLSTYMQLNMQEAIADLTPPGT 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 136

Query: 301 DNYGYMLFNPHIGININSYGAFSNFLQRVFSIDTIVKPLPPAMAYNVSRNLHFFTRIFTQ 360
                                   FLQRVFSIDTIVKPLPPAMAYNVSRNL+FFTRIFTQ
Sbjct: 301 ------------------------FLQRVFSIDTIVKPLPPAMAYNVSRNLNFFTRIFTQ 136

Query: 361 FFDPEGIANAQKSLGLGQEEKARRVR 387
           FFDPEGIANAQKSLGLGQEEKARRVR
Sbjct: 361 FFDPEGIANAQKSLGLGQEEKARRVR 136

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BLAST of Lsi08G000510 vs. NCBI nr
Match: XP_022141748.1 (uncharacterized protein LOC111012033 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 7.8e-35
Identity = 132/386 (34.20%), Postives = 134/386 (34.72%), Query Frame = 0


Query: 1   MAKKKQLASSAPWRGEEEVDEFAGAKLKVTKNPGETSVMHVPRKKSVKSKSSKEEEDSLE 60
           MAKKKQLASSAPWRGEEEVDEFA AKLKVTKNPGET VMHVPRKKSVKSKSSKEE+DSLE
Sbjct: 1   MAKKKQLASSAPWRGEEEVDEFADAKLKVTKNPGETPVMHVPRKKSVKSKSSKEEDDSLE 60

Query: 61  IDPELRYSFQRNYQGKSLLSCKAEVLGELEVVEPAFTELPTDESPEGFTESPTEKLPEGN 120
           IDPELRYSFQRNYQ                                              
Sbjct: 61  IDPELRYSFQRNYQ---------------------------------------------- 120

Query: 121 HAYTLELRKEGFLGNFFPRSSSTSLYIELHPQRLMNGIQATLSAALQRHYKLKGNLNYEM 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 136

Query: 181 SMTEFEQMAAVLATGCMVMAYVKCRAVILTNGSSHLWDSNRLKMPRITSDLMIPTPLAFA 240
                                                                       
Sbjct: 181 ------------------------------------------------------------ 136

Query: 241 IQQLGFVDVDDLHIRLKAVPYFPSAGTPLVSPMGLRETTLSTYMQLNMQEAIADLTPPGT 300
                                                                       
Sbjct: 241 ------------------------------------------------------------ 136

Query: 301 DNYGYMLFNPHIGININSYGAFSNFLQRVFSIDTIVKPLPPAMAYNVSRNLHFFTRIFTQ 360
                                   FLQRVFSIDTIVKPLPPAMAYNVSRNL+FFTRIFTQ
Sbjct: 301 ------------------------FLQRVFSIDTIVKPLPPAMAYNVSRNLNFFTRIFTQ 136

Query: 361 FFDPEGIANAQKSLGLGQEEKARRVR 387
           FFDPEGIANAQKSLGLGQEEKARRVR
Sbjct: 361 FFDPEGIANAQKSLGLGQEEKARRVR 136

[Close]

BLAST of Lsi08G000510 vs. TAIR 10
Match: AT1G33810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 118.2 bits (295), Expect = 1.4e-26
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 318 SYGAFSNFLQRVFSIDTIVKPLPPAMAYNVSRNLHFFTRIFTQFFDPEGIANAQKSLGLG 377
           S+     FLQ VF+IDT+VKPLPP+MA+NVSRNL FFTRIFTQFFDPEGIANAQKSLGLG
Sbjct: 70  SFNRNYQFLQSVFTIDTLVKPLPPSMAFNVSRNLSFFTRIFTQFFDPEGIANAQKSLGLG 129

Query: 378 QEEKARRVR 387
           QEEKARRVR
Sbjct: 130 QEEKARRVR 138

HSP 2 Score: 84.7 bits (208), Expect = 1.7e-16
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MAKKKQLASSAPWRG--EEEVDEFAGAKLKVTKNPGETSVMHVPRKKSVKSKSSKEEEDS 60
          MAKKK+L S APWRG  E++ D+F+ AKLKVTK+    S MHVP + + K   + +++DS
Sbjct: 1  MAKKKELLSKAPWRGDDEDDSDKFSNAKLKVTKDSDGMSKMHVPSRGTKKGSLADDDDDS 60

Query: 61 LEIDPELRYSFQRNYQ 75
          LEIDP+LRYSF RNYQ
Sbjct: 61 LEIDPQLRYSFNRNYQ 76

The following BLAST results are available for this feature:

BLAST of Lsi08G000510 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G000510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BKU9	3.8e-43	48.35	Putative coat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16...	[more]
A0A1S3CAR5	3.7e-38	51.00	uncharacterized protein LOC103498698 OS=Cucumis melo OX=3656 GN=LOC103498698 PE=...	[more]
A0A1S3CAM9	2.9e-35	34.20	uncharacterized protein LOC103498699 OS=Cucumis melo OX=3656 GN=LOC103498699 PE=...	[more]
A0A6J1CLF2	3.8e-35	34.20	uncharacterized protein LOC111012033 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A0A0KW70	1.1e-34	33.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650520 PE=4 SV=1	[more]

BLAST of Lsi08G000510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039255.1	7.8e-43	48.35	putative coat protein [Cucumis melo var. makuwa] >TYK00441.1 putative coat prote...	[more]
XP_008459635.1	7.5e-38	51.00	PREDICTED: uncharacterized protein LOC103498698 [Cucumis melo]	[more]
XP_038889821.1	3.5e-35	34.20	uncharacterized protein LOC120079628 [Benincasa hispida]	[more]
XP_008459636.1	6.0e-35	34.20	PREDICTED: uncharacterized protein LOC103498699 [Cucumis melo]	[more]
XP_022141748.1	7.8e-35	34.20	uncharacterized protein LOC111012033 [Momordica charantia]	[more]

BLAST of Lsi08G000510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33810.1	1.4e-26	82.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR37191	ZINC FINGER/BTB DOMAIN PROTEIN	coord: 323..386 coord: 3..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G000510.1	Lsi08G000510.1	mRNA