Lsi07G014960 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G014960
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	C2H2-type domain-containing protein
Location	chr07: 21833438 .. 21833926 (-)
RNA-Seq Expression	Lsi07G014960
Synteny	Lsi07G014960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCCAGCTATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCAAGAAAATCTCAGTCTCAATACTCTTCCTCTCGCATTTTTCCATGTCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCTTCTCGTAAGGCTTTCACCTCTGAAATTCTTCACCTCGGTTCGCTTCAACACTCGCCGCCACCGCCGACCATGACTCCTCCTCCTCATCATCATCATCTTCTGCCGCGCTACGCGCCAGCTCCGGCTCCGACTCCTCCGACTCCAGGTGCTTTTCTCGATGACCATTGGTTTCATCAGAATCATTTCTGTGCTAACACTACCACCCCCTCTGCCTCCTCCTCGCCGGATGCTCTCTCTCCGAACACCGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATGA

mRNA sequence

ATGGCGGACCCAGCTATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCAAGAAAATCTCAGTCTCAATACTCTTCCTCTCGCATTTTTCCATGTCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCTTCTCGTAAGGCTTTCACCTCTGAAATTCTTCACCTCGGTTCGCTTCAACACTCGCCGCCACCGCCGACCATGACTCCTCCTCCTCATCATCATCATCTTCTGCCGCGCTACGCGCCAGCTCCGGCTCCGACTCCTCCGACTCCAGGTGCTTTTCTCGATGACCATTGGTTTCATCAGAATCATTTCTGTGCTAACACTACCACCCCCTCTGCCTCCTCCTCGCCGGATGCTCTCTCTCCGAACACCGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATGA

Coding sequence (CDS)

ATGGCGGACCCAGCTATTTACGACTTCCTTAGCCAAACAACCACTCCTTCTAATTCTTCATCCAAAGCTTCAAGAAAATCTCAGTCTCAATACTCTTCCTCTCGCATTTTTCCATGTCTTTACTGCCCTCGCAAATTTTACACTTCTCAAGCCCTAGGCGGCCACCAAAATGCTCACAAGAGAGAAAGAGCCGCTTCTCGTAAGGCTTTCACCTCTGAAATTCTTCACCTCGGTTCGCTTCAACACTCGCCGCCACCGCCGACCATGACTCCTCCTCCTCATCATCATCATCTTCTGCCGCGCTACGCGCCAGCTCCGGCTCCGACTCCTCCGACTCCAGGTGCTTTTCTCGATGACCATTGGTTTCATCAGAATCATTTCTGTGCTAACACTACCACCCCCTCTGCCTCCTCCTCGCCGGATGCTCTCTCTCCGAACACCGATGCCGCCGTTGAACATGTAACCATCGATCTCACTCTTCGCTTATGA

Protein sequence

MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTPPTPGAFLDDHWFHQNHFCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL

Homology

[Close]

BLAST of Lsi07G014960 vs. ExPASy Swiss-Prot
Match: Q9FFX4 (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.6e-14
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 4  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER 63
          P+   F+    T S SS + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRER
Sbjct: 6  PSYLHFVGPAKTRS-SSKRHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRER 65

Query: 64 AASRKAFTSEILHLGSLQHSPP 86
          AA+R+       +LG L +SPP
Sbjct: 66 AAARR-------NLGVLANSPP 79

[Close]

BLAST of Lsi07G014960 vs. ExPASy Swiss-Prot
Match: Q9FKA9 (Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.6e-11
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 21  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGS 80
           SK + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++   
Sbjct: 19  SKEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNND 78

Query: 81  LQHSPPPPTMTPPPHHHHLLPRYAPAPAPTPPT 113
             H+ P    +P  HH  +L   A A     PT
Sbjct: 79  FLHTLPVFLSSPSQHHLTILGYPASASVACFPT 111

[Close]

BLAST of Lsi07G014960 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 11  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAAS 70
           S  T P +S+S++S   Q Q      S R+F C YC RKFY+SQALGGHQNAHKRER  +
Sbjct: 55  SSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLA 114

[Close]

BLAST of Lsi07G014960 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-09
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 17 SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK 69
          S+SS+   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Sbjct: 48 SSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 99

[Close]

BLAST of Lsi07G014960 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.1e-09
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 18 NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA 70
          +SSS +S  S S     R+F C YC RKFY+SQALGGHQNAHK ER  ++K+
Sbjct: 33 SSSSSSSTNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKS 84

[Close]

BLAST of Lsi07G014960 vs. ExPASy TrEMBL
Match: A0A6J1J5R2 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111481997 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.0e-59
Identity = 129/166 (77.71%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP-PTPGAFLDD 120
           RERAASRKAF SEILHLGSL   P   TMT    HHHL   Y  APAPTP P P  FL  
Sbjct: 61  RERAASRKAFASEILHLGSLPPQPTTTTMT----HHHLPQPYTVAPAPTPTPAPADFLGQ 120

Query: 121 HWFHQNHFCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL 163
           HWF+QNH+ AN   TTT SAS+SPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 HWFNQNHYSANTTTTTTASASASPDALSPNVDTAVEHVTIDLTLRL 162

[Close]

BLAST of Lsi07G014960 vs. ExPASy TrEMBL
Match: A0A6J1F843 (protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111441721 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.8e-59
Identity = 129/168 (76.79%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP---PTPGAFL 120
           RERAASRKAF SEILHLGSL   PPPP  T    HHHL   Y  AP+PTP   P P  FL
Sbjct: 61  RERAASRKAFASEILHLGSL---PPPPPPTTTTTHHHLPQPYTVAPSPTPTPTPAPADFL 120

Query: 121 DDHWFHQNHFCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL 163
             HWF+QNH+ ANTTT    SAS+SPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 GQHWFNQNHYSANTTTTASASASASPDALSPNADTAVEHVTIDLTLRL 165

[Close]

BLAST of Lsi07G014960 vs. ExPASy TrEMBL
Match: A0A6J1JQI7 (protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111486586 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.4e-54
Identity = 120/163 (73.62%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFLSQTT  ++     SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTPPTPGAFLDDH 120
           RERAASRK FTSEILHLGSLQHS PPP   PP  +HHL      +P+ T   P A  D+H
Sbjct: 61  RERAASRKVFTSEILHLGSLQHSRPPP--PPPTTYHHL-----ASPSATALAPSALFDEH 120

Query: 121 WFHQ-NHFCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL 163
           WFHQ NH+   TTT SAS+SP+ LSPN DAAVEHVTIDLTLRL
Sbjct: 121 WFHQNNHYRGTTTTASASASPNDLSPNADAAVEHVTIDLTLRL 156

[Close]

BLAST of Lsi07G014960 vs. ExPASy TrEMBL
Match: A0A6J1EJQ6 (protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111435120 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.9e-53
Identity = 119/162 (73.46%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFLSQTT  ++     SRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLSQTTASNSVPKTTSRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTPPTPGAFLDDH 120
           RERAASRKAFTSEILHLGSLQHS PPP   PP  +HHL      +P+ T   P A  D+H
Sbjct: 61  RERAASRKAFTSEILHLGSLQHSRPPP--PPPTTYHHL-----ASPSTTALAPSALFDEH 120

Query: 121 WFHQNHFCANTTTPSASSSPDALSPNTDAAVEHVTIDLTLRL 163
           WFHQN+    TTT +AS+SP+ LSPN DAAVEHVTIDLTLRL
Sbjct: 121 WFHQNNHYRGTTT-TASASPNDLSPNADAAVEHVTIDLTLRL 154

[Close]

BLAST of Lsi07G014960 vs. ExPASy TrEMBL
Match: A0A0A0LDF1 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G509430 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.1e-42
Identity = 114/175 (65.14%), Postives = 127/175 (72.57%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTT--PSNSSSKASR--KSQSQYSSSRIFPCLYCPRKFYTSQALGGHQ 60
           MADP IYDFLSQTTT  PSN+S+   +   S+  +S SRIFPCLYCPRKFYTSQALGGHQ
Sbjct: 1   MADPTIYDFLSQTTTAPPSNNSTTLPKAASSRKSHSQSRIFPCLYCPRKFYTSQALGGHQ 60

Query: 61  NAHKRER-AASRKA---FTSEILHLG--SLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP 120
           NAHKRER AASRKA    T+EILHLG  SLQHSPPPP  T   HHHH LP +   P PTP
Sbjct: 61  NAHKRERAAASRKAAALTTTEILHLGCSSLQHSPPPPPPTTITHHHHHLPPHF-YPLPTP 120

Query: 121 PTPGAFLDDHW-FHQNHFCANTTTPSASSSPDALSP--NTDAAVEHVTIDLTLRL 163
           P   +FLD H  FH N+FC NT     S+SPD LSP  +TD A+EH+ IDLTLRL
Sbjct: 121 P---SFLDHHHSFHHNNFCPNT-----SASPDTLSPTNSTDPALEHLNIDLTLRL 166

[Close]

BLAST of Lsi07G014960 vs. NCBI nr
Match: KAG6581122.1 (Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.2 bits (609), Expect = 2.5e-59
Identity = 131/180 (72.78%), Postives = 136/180 (75.56%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP-------PTP 120
           RERAASRKAF SEILHLGSL   PPPPT T    HHHL   Y  APAPTP       P P
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPPTTTTTTTHHHLPQPYTVAPAPTPIPTPTTTPAP 120

Query: 121 GAFLDDHWFHQNHFCANTTT-----------PSASSSPDALSPNTDAAVEHVTIDLTLRL 163
             FL  HWF+QNH+ ANTTT            SAS+SPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 ADFLGQHWFNQNHYSANTTTTTTTTTTTAASASASASPDALSPNADTAVEHVTIDLTLRL 180

[Close]

BLAST of Lsi07G014960 vs. NCBI nr
Match: KAG7017856.1 (Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.0 bits (606), Expect = 5.5e-59
Identity = 130/175 (74.29%), Postives = 135/175 (77.14%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP-------PTP 120
           RERAASRKAF SEILHLGSL   PPP T T    HHHL   Y  APAPTP       P P
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPTTTTTTTTHHHLPQPYTVAPAPTPIPTPTTTPAP 120

Query: 121 GAFLDDHWFHQNHFCANTTT------PSASSSPDALSPNTDAAVEHVTIDLTLRL 163
             FL  HWF+QNH+ ANTTT       SAS+SPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 ADFLGQHWFNQNHYSANTTTTTTAASASASASPDALSPNADTAVEHVTIDLTLRL 175

[Close]

BLAST of Lsi07G014960 vs. NCBI nr
Match: XP_022983390.1 (protein LATE FLOWERING-like [Cucurbita maxima])

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58
Identity = 129/166 (77.71%), Postives = 134/166 (80.72%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP-PTPGAFLDD 120
           RERAASRKAF SEILHLGSL   P   TMT    HHHL   Y  APAPTP P P  FL  
Sbjct: 61  RERAASRKAFASEILHLGSLPPQPTTTTMT----HHHLPQPYTVAPAPTPTPAPADFLGQ 120

Query: 121 HWFHQNHFCAN---TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL 163
           HWF+QNH+ AN   TTT SAS+SPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 HWFNQNHYSANTTTTTTASASASPDALSPNVDTAVEHVTIDLTLRL 162

[Close]

BLAST of Lsi07G014960 vs. NCBI nr
Match: XP_023529006.1 (protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 128/174 (73.56%), Postives = 135/174 (77.59%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT SNS++KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSATKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP-------PTP 120
           RERAASRKAF SEILHLGSL   PPPPT      HHHL   Y   PAPTP       P P
Sbjct: 61  RERAASRKAFASEILHLGSLPPPPPPPTTA----HHHLPQPYTVVPAPTPTPTPTTTPAP 120

Query: 121 GAFLDDHWFHQNHFCAN-----TTTPSASSSPDALSPNTDAAVEHVTIDLTLRL 163
             FL  HWF+QNH+ AN     TTT +AS+SPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 ADFLGQHWFNQNHYSANTTTTTTTTTTASASPDALSPNADTAVEHVTIDLTLRL 170

[Close]

BLAST of Lsi07G014960 vs. NCBI nr
Match: XP_022934585.1 (protein LATE FLOWERING-like [Cucurbita moschata])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 129/168 (76.79%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MADPAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60
           MADPAIYDFL+QTTT SNS+ KASRK QSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK
Sbjct: 1   MADPAIYDFLTQTTTASNSAPKASRKFQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHK 60

Query: 61  RERAASRKAFTSEILHLGSLQHSPPPPTMTPPPHHHHLLPRYAPAPAPTP---PTPGAFL 120
           RERAASRKAF SEILHLGSL   PPPP  T    HHHL   Y  AP+PTP   P P  FL
Sbjct: 61  RERAASRKAFASEILHLGSL---PPPPPPTTTTTHHHLPQPYTVAPSPTPTPTPAPADFL 120

Query: 121 DDHWFHQNHFCANTTT---PSASSSPDALSPNTDAAVEHVTIDLTLRL 163
             HWF+QNH+ ANTTT    SAS+SPDALSPN D AVEHVTIDLTLRL
Sbjct: 121 GQHWFNQNHYSANTTTTASASASASPDALSPNADTAVEHVTIDLTLRL 165

[Close]

BLAST of Lsi07G014960 vs. TAIR 10
Match: AT5G14010.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.8e-15
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 4  PAIYDFLSQTTTPSNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRER 63
          P+   F+    T S SS + S  S +  +S R+FPC YCPRKFYTSQALGGHQNAHKRER
Sbjct: 6  PSYLHFVGPAKTRS-SSKRHSFSSSAHPASHRLFPCQYCPRKFYTSQALGGHQNAHKRER 65

Query: 64 AASRKAFTSEILHLGSLQHSPP 86
          AA+R+       +LG L +SPP
Sbjct: 66 AAARR-------NLGVLANSPP 79

[Close]

BLAST of Lsi07G014960 vs. TAIR 10
Match: AT5G48890.1 (C2H2-like zinc finger protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-12
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 21  SKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKAFTS-EILHLGS 80
           SK + K+    SS RIFPCL+C RKF++SQALGGHQNAHK+ER A+R+A  + + ++   
Sbjct: 19  SKEANKTDENTSSLRIFPCLFCSRKFHSSQALGGHQNAHKKERTAARRAKRAYDFVNNND 78

Query: 81  LQHSPPPPTMTPPPHHHHLLPRYAPAPAPTPPT 113
             H+ P    +P  HH  +L   A A     PT
Sbjct: 79  FLHTLPVFLSSPSQHHLTILGYPASASVACFPT 111

[Close]

BLAST of Lsi07G014960 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 )

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 11  SQTTTPSNSSSKASRKSQSQYS----SSRIFPCLYCPRKFYTSQALGGHQNAHKRERAAS 70
           S  T P +S+S++S   Q Q      S R+F C YC RKFY+SQALGGHQNAHKRER  +
Sbjct: 55  SSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQALGGHQNAHKRERTLA 114

[Close]

BLAST of Lsi07G014960 vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 )

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-10
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 17 SNSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRK 69
          S+SS+   +  Q Q +  R+F C YC RKFY+SQALGGHQNAHKRER  +++
Sbjct: 48 SSSSTSHHQHQQEQLADPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKR 99

[Close]

BLAST of Lsi07G014960 vs. TAIR 10
Match: AT5G57520.1 (zinc finger protein 2 )

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-10
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 18 NSSSKASRKSQSQYSSSRIFPCLYCPRKFYTSQALGGHQNAHKRERAASRKA 70
          +SSS +S  S S     R+F C YC RKFY+SQALGGHQNAHK ER  ++K+
Sbjct: 33 SSSSSSSTNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKS 84

The following BLAST results are available for this feature:

BLAST of Lsi07G014960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFX4	9.6e-14	54.88	Zinc finger protein KNUCKLES OS=Arabidopsis thaliana OX=3702 GN=KNU PE=1 SV=1	[more]
Q9FKA9	7.6e-11	45.16	Protein LATE FLOWERING OS=Arabidopsis thaliana OX=3702 GN=LATE PE=2 SV=1	[more]
Q39263	1.1e-09	53.97	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
Q42485	4.2e-09	55.77	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]
Q39261	7.1e-09	57.69	Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1	[more]

BLAST of Lsi07G014960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J5R2	6.0e-59	77.71	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111481997 PE=4 SV=...	[more]
A0A6J1F843	7.8e-59	76.79	protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111441721 PE=4 S...	[more]
A0A6J1JQI7	4.4e-54	73.62	protein LATE FLOWERING-like OS=Cucurbita maxima OX=3661 GN=LOC111486586 PE=4 SV=...	[more]
A0A6J1EJQ6	4.9e-53	73.46	protein LATE FLOWERING-like OS=Cucurbita moschata OX=3662 GN=LOC111435120 PE=4 S...	[more]
A0A0A0LDF1	5.1e-42	65.14	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G509430 P...	[more]

BLAST of Lsi07G014960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581122.1	2.5e-59	72.78	Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7017856.1	5.5e-59	74.29	Zinc finger protein KNUCKLES, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022983390.1	1.2e-58	77.71	protein LATE FLOWERING-like [Cucurbita maxima]	[more]
XP_023529006.1	1.6e-58	73.56	protein LATE FLOWERING-like [Cucurbita pepo subsp. pepo]	[more]
XP_022934585.1	1.6e-58	76.79	protein LATE FLOWERING-like [Cucurbita moschata]	[more]

BLAST of Lsi07G014960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14010.1	6.8e-15	54.88	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G48890.1	5.4e-12	45.16	C2H2-like zinc finger protein	[more]
AT1G66140.1	7.8e-11	53.97	zinc finger protein 4	[more]
AT1G80730.1	3.0e-10	55.77	zinc-finger protein 1	[more]
AT5G57520.1	5.1e-10	57.69	zinc finger protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 14..79 e-value: 8.4E-6 score: 27.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..111
None	No IPR available	PANTHER	PTHR45730:SF28	OS02G0182300 PROTEIN	coord: 17..162
None	No IPR available	PANTHER	PTHR45730	ZINC FINGER PROTEIN JAGGED	coord: 17..162
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 39..59
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 37..64 score: 10.595541
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 34..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G014960.1	Lsi07G014960.1	mRNA