Lsi07G014670 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCACAAGTTAATGCAACCTTTCCTGTTTGATGCCCAAATCCTTTCTCTCTTCTCTCTGCTTTCTCTCTTCTCTCTCTCTCATTGGTCTTTCAGTCTCTCTCTTTCCATTACAACTTTTCCACTTCCCTCAACAATTGTCCTCATCTTTCTCCTTCTTTCTTCTTCCCAACTTCTCTCTAAAACCCCATTTTCAATCCTTCATTTTCATTCCCTGATGATCACACTAGCATCAACTTAAGAACAGATCAAAGCAAAACCATCCCATCAATGGGTTCCTGTGTTTCAATCCATAGAAATTCTGATTCCGCCATGAAATTCAGACTCTCACTTGCCTCCAAAACCAACGATATGGCAATTCCCCCTTCACCCATCAAGCTTAACAACAACACTCCTATCAACGGCAGTGTCTTCCTCAAATCTCAGACCTCCCCTTCTCACTTGGGTACTGCTCTGTTTCTTCTTCTTCTTCACTTTCTACAACTATAATCGCCTGTGTTTTCTTCTTTTTGTTTCGTTTCTCTTCATGATTTCTTGTTGATTTGTTTTAGTTCTGTCATGAACTTTGAGGCTTTACAATCAGTGCTTAGAAAGATTTTTCGCCTCGTTACCCCACTCATATCAGAACCTAAATTATATGCGATCTAAAGTGTTTGCTTCTTGCGTGTCTCTGATTTGACTTTGATTGTTTTCACATGATCTAACCCTGTTTTCTTTTTCTAATTGAATATCTTATTGAATCATTGCCTTTTTTATATATTGTTTAATTGGTATGATAAAGTTAATCTAGGCCCCATTTGTTTATATTATTTATAAATTAAAAAAAAAAAAGACAAAAAAAGCTGAGAAACCGATCTCTTTTCTAATGTAAATCTCCAGAGATTGATGAACAGGAGAAGGATTTTACCTTTTTCTTTTCCTTTTTAACAATTATTCATTCAAATTAGAGAAACCCCAGATTTCTTCTTTTCTTATGGTTTGATGATGAAATTTTGAGAAGGAATTAACACTGTTCTGTGTATAGAGATGGAGAATTCCTGTCTTTCTCCAGTGGATGTGGAAGCTCTGTTTCCAATGAAACTATATATCGTTATCAGTGGATTTTGTGATTAATTATCAACAGATAAAAAGATTAAGAGAAAAATAAGTGTAATAGAGATTTGTTAGTTCAATTTTACTGAGTTTCAATCATATTGTACTGATCACACCTAGTATTTTATGAAACACCTTTGTGTTTGATCCTATAATTACTTTTTTAACTTTAAAATAAATTAAGGGGTTTGTTTCCTTTGATTTATGTTTCTTATAATTTGTTGCATAGTGGTGTTAGATTAGATTATATATGGCCCCTCTTTTGATAAGGATGTTGTCATGAGTTTCTTTCCATCTCACATGAAGTATGCCAGAGTTATTGGAAGGTGAGGAATGCTTACTTTGCAGGCTTCAAGGGTTCCCATTTATTAAGCTTGAACCTGGGAACACGAAGAACTTCTCTTCTGTACATCTTATGTCGTTATCAACAGGACCGCTTTTATGGACAAATTTACGACTATTCCTAGATGCTAGTTTATTACAAGTTTAGTTTGGCCCTACCTATTTGGTTTTTAGGGCAATGGAATCAATTGCCTTGTATAGTCATTATCTGAGGAAGGAGAAAATGATGGATGGAAGTAAGACTTTTCTTCCTAGAATTGCATAGCAGAAGCAGTTTCTGTTCTAGGATTTCTTTCACAAGGATGTTGTAACTCAGTTCTACTGAGAATTTCAGATGCTTATTTATTCATCCTTCCTATGTTTGGAGTTCCAAATTTTTGTTGTTTTGATGTGGTAAACCCAAATCCATTATGACCAAACTTGAAAAGTCCTTGTTGTGTTAACTTTGAGACTGTGGCTTTCGTAGGCTACTATTAGAATTCTTTCTAGCTTATATTTGTCATGGTGAGTTTTTTTCTCTAATGTCCTCTAGTGAAAGAATTTTTCACTAAGAGTCCATGTTTTTTTTTTATCTATCACACCTATTTTTGTATAAACTCTGAAATGGCTGTTCTATGAAAGAAGCAAGTTGACAATAGAGCTTTGCTATTCTCTCATAGGTAGCAAAGATGAAGCGTATTTCGATTCCCGAGGCTGGTTGGATTCAGATTGTGAAGATGATTTCTACAGTGTTAATGGTGGTAAGTAGACATTGGAATTCTTTTTATGCTGTTTGCCTTTTTCATCTCCTCTCCTGGAGTATTCAATTGCAATGGTGCTGCAGATTTCACTCCTTCACGAGGAAACACTCCAGTACACTCCAGTTTCTCCTCCGGTACACCTCGGATCAATCAAGTTCATGGCATTGATGATCGAACTCCGATCACCATTCCCGAACCGTCACCAACAGGAAAGAAGAAGCTGGCTGATCTTTTCAGGGAGAGTTCTAGAAATGGCACAGACATACAAGCCAAACCAACTCTAAATGAACTTGCCCTGCAGTCGAATCCCGAAACGCCTTACATGTCAGGAACAAACTCTGTATGCAGCAGCCAGAGGACCCCAAATGGAGATGTCGGGATTGAGAAGGAGAGGCCATTTGGATCTGTACAATGCTGCCTCCCAAGCTTGGGATCATGTCGTAGCTTTGGTGACCGGAGGAAGAAGGCGAGTCCTGCCATAGCTGTATAATACAAGCTTTGATCGAACAAGCTGTGAATTCCCCTCTGATTCTGCCATTGTGAGGCCCCAAAGCTCATGGAGCTCACAATTGATCAGAAATGTGTAAAGTTCTGAAATATCAGATACAGATATAGCAGCAGTGATCAAGAGATATTGCTGTTGTTGAAGGCAATGGTTATATATATATATGTTTGTTAGATTCCTAGTACAGTCTAATATCATATCAGAATATGTAAGAAAACAAAGGAGAGAGGAAGAGGAAGAAAGGGAAAGAAAGTAATAAGACCTTTTTTTTTGGCACCAGTTTGTTTCTTATTATGAGAATTATAATAAACAGCCTTTGTGTTGGTTAATAAGAGAAAAATAAATAAATTATTTAATTTTAATTTAA CCCACAAGTTAATGCAACCTTTCCTGTTTGATGCCCAAATCCTTTCTCTCTTCTCTCTGCTTTCTCTCTTCTCTCTCTCTCATTGGTCTTTCAGTCTCTCTCTTTCCATTACAACTTTTCCACTTCCCTCAACAATTGTCCTCATCTTTCTCCTTCTTTCTTCTTCCCAACTTCTCTCTAAAACCCCATTTTCAATCCTTCATTTTCATTCCCTGATGATCACACTAGCATCAACTTAAGAACAGATCAAAGCAAAACCATCCCATCAATGGGTTCCTGTGTTTCAATCCATAGAAATTCTGATTCCGCCATGAAATTCAGACTCTCACTTGCCTCCAAAACCAACGATATGGCAATTCCCCCTTCACCCATCAAGCTTAACAACAACACTCCTATCAACGGCAGTGTCTTCCTCAAATCTCAGACCTCCCCTTCTCACTTGGGTAGCAAAGATGAAGCGTATTTCGATTCCCGAGGCTGGTTGGATTCAGATTGTGAAGATGATTTCTACAGTGTTAATGGTGATTTCACTCCTTCACGAGGAAACACTCCAGTACACTCCAGTTTCTCCTCCGGTACACCTCGGATCAATCAAGTTCATGGCATTGATGATCGAACTCCGATCACCATTCCCGAACCGTCACCAACAGGAAAGAAGAAGCTGGCTGATCTTTTCAGGGAGAGTTCTAGAAATGGCACAGACATACAAGCCAAACCAACTCTAAATGAACTTGCCCTGCAGTCGAATCCCGAAACGCCTTACATGTCAGGAACAAACTCTGTATGCAGCAGCCAGAGGACCCCAAATGGAGATGTCGGGATTGAGAAGGAGAGGCCATTTGGATCTGTACAATGCTGCCTCCCAAGCTTGGGATCATGTCGTAGCTTTGGTGACCGGAGGAAGAAGGCGAGTCCTGCCATAGCTGTATAATACAAGCTTTGATCGAACAAGCTGTGAATTCCCCTCTGATTCTGCCATTGTGAGGCCCCAAAGCTCATGGAGCTCACAATTGATCAGAAATGTGTAAAGTTCTGAAATATCAGATACAGATATAGCAGCAGTGATCAAGAGATATTGCTGTTGTTGAAGGCAATGGTTATATATATATATGTTTGTTAGATTCCTAGTACAGTCTAATATCATATCAGAATATGTAAGAAAACAAAGGAGAGAGGAAGAGGAAGAAAGGGAAAGAAAGTAATAAGACCTTTTTTTTTGGCACCAGTTTGTTTCTTATTATGAGAATTATAATAAACAGCCTTTGTGTTGGTTAATAAGAGAAAAATAAATAAATTATTTAATTTTAATTTAA ATGGGTTCCTGTGTTTCAATCCATAGAAATTCTGATTCCGCCATGAAATTCAGACTCTCACTTGCCTCCAAAACCAACGATATGGCAATTCCCCCTTCACCCATCAAGCTTAACAACAACACTCCTATCAACGGCAGTGTCTTCCTCAAATCTCAGACCTCCCCTTCTCACTTGGGTAGCAAAGATGAAGCGTATTTCGATTCCCGAGGCTGGTTGGATTCAGATTGTGAAGATGATTTCTACAGTGTTAATGGTGATTTCACTCCTTCACGAGGAAACACTCCAGTACACTCCAGTTTCTCCTCCGGTACACCTCGGATCAATCAAGTTCATGGCATTGATGATCGAACTCCGATCACCATTCCCGAACCGTCACCAACAGGAAAGAAGAAGCTGGCTGATCTTTTCAGGGAGAGTTCTAGAAATGGCACAGACATACAAGCCAAACCAACTCTAAATGAACTTGCCCTGCAGTCGAATCCCGAAACGCCTTACATGTCAGGAACAAACTCTGTATGCAGCAGCCAGAGGACCCCAAATGGAGATGTCGGGATTGAGAAGGAGAGGCCATTTGGATCTGTACAATGCTGCCTCCCAAGCTTGGGATCATGTCGTAGCTTTGGTGACCGGAGGAAGAAGGCGAGTCCTGCCATAGCTGTATAA MGSCVSIHRNSDSAMKFRLSLASKTNDMAIPPSPIKLNNNTPINGSVFLKSQTSPSHLGSKDEAYFDSRGWLDSDCEDDFYSVNGDFTPSRGNTPVHSSFSSGTPRINQVHGIDDRTPITIPEPSPTGKKKLADLFRESSRNGTDIQAKPTLNELALQSNPETPYMSGTNSVCSSQRTPNGDVGIEKERPFGSVQCCLPSLGSCRSFGDRRKKASPAIAV Homology
BLAST of Lsi07G014670 vs. ExPASy Swiss-Prot
Match: Q9LK32 (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana OX=3702 GN=Y-2 PE=1 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21 Identity = 86/210 (40.95%), Postives = 103/210 (49.05%), Query Frame = 0
BLAST of Lsi07G014670 vs. ExPASy TrEMBL
Match: A0A1S3BP47 (uncharacterized protein At3g27210-like OS=Cucumis melo OX=3656 GN=LOC103491777 PE=4 SV=1) HSP 1 Score: 407.9 bits (1047), Expect = 2.7e-110 Identity = 202/220 (91.82%), Postives = 208/220 (94.55%), Query Frame = 0
BLAST of Lsi07G014670 vs. ExPASy TrEMBL
Match: A0A0A0LB55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588480 PE=4 SV=1) HSP 1 Score: 407.1 bits (1045), Expect = 4.5e-110 Identity = 201/220 (91.36%), Postives = 209/220 (95.00%), Query Frame = 0
BLAST of Lsi07G014670 vs. ExPASy TrEMBL
Match: A0A6J1J5K2 (uncharacterized protein At3g27210-like OS=Cucurbita maxima OX=3661 GN=LOC111481493 PE=4 SV=1) HSP 1 Score: 364.0 bits (933), Expect = 4.4e-97 Identity = 183/226 (80.97%), Postives = 201/226 (88.94%), Query Frame = 0
BLAST of Lsi07G014670 vs. ExPASy TrEMBL
Match: A0A6J1F463 (uncharacterized protein At3g27210 OS=Cucurbita moschata OX=3662 GN=LOC111442001 PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 5.8e-97 Identity = 183/226 (80.97%), Postives = 200/226 (88.50%), Query Frame = 0
BLAST of Lsi07G014670 vs. ExPASy TrEMBL
Match: A0A6J1EK04 (uncharacterized protein At3g27210-like OS=Cucurbita moschata OX=3662 GN=LOC111435186 PE=4 SV=1) HSP 1 Score: 354.0 bits (907), Expect = 4.6e-94 Identity = 181/235 (77.02%), Postives = 198/235 (84.26%), Query Frame = 0
BLAST of Lsi07G014670 vs. NCBI nr
Match: XP_038901054.1 (uncharacterized protein At3g27210-like [Benincasa hispida]) HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111 Identity = 205/220 (93.18%), Postives = 210/220 (95.45%), Query Frame = 0
BLAST of Lsi07G014670 vs. NCBI nr
Match: XP_008450086.1 (PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo]) HSP 1 Score: 407.9 bits (1047), Expect = 5.5e-110 Identity = 202/220 (91.82%), Postives = 208/220 (94.55%), Query Frame = 0
BLAST of Lsi07G014670 vs. NCBI nr
Match: XP_011651566.1 (uncharacterized protein At3g27210 isoform X1 [Cucumis sativus]) HSP 1 Score: 407.1 bits (1045), Expect = 9.4e-110 Identity = 201/220 (91.36%), Postives = 209/220 (95.00%), Query Frame = 0
BLAST of Lsi07G014670 vs. NCBI nr
Match: KAG6581091.1 (hypothetical protein SDJN03_21093, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 369.8 bits (948), Expect = 1.7e-98 Identity = 184/225 (81.78%), Postives = 200/225 (88.89%), Query Frame = 0
BLAST of Lsi07G014670 vs. NCBI nr
Match: XP_023529186.1 (uncharacterized protein At3g27210-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 369.0 bits (946), Expect = 2.8e-98 Identity = 186/226 (82.30%), Postives = 201/226 (88.94%), Query Frame = 0
BLAST of Lsi07G014670 vs. TAIR 10
Match: AT3G27210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40860.1); Has 133 Blast hits to 98 proteins in 25 species: Archae - 0; Bacteria - 6; Metazoa - 32; Fungi - 7; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). ) HSP 1 Score: 105.1 bits (261), Expect = 7.1e-23 Identity = 86/210 (40.95%), Postives = 103/210 (49.05%), Query Frame = 0
BLAST of Lsi07G014670 vs. TAIR 10
Match: AT3G01860.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 95.9 bits (237), Expect = 4.3e-20 Identity = 80/230 (34.78%), Postives = 111/230 (48.26%), Query Frame = 0
BLAST of Lsi07G014670 vs. TAIR 10
Match: AT3G01860.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 88.2 bits (217), Expect = 9.0e-18 Identity = 60/161 (37.27%), Postives = 79/161 (49.07%), Query Frame = 0
BLAST of Lsi07G014670 vs. TAIR 10
Match: AT5G40860.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 69 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 78.6 bits (192), Expect = 7.1e-15 Identity = 59/171 (34.50%), Postives = 79/171 (46.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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