Lsi07G013700 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G013700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	histone deacetylase complex subunit SAP18-like
Location	chr07: 19883251 .. 19884624 (-)
RNA-Seq Expression	Lsi07G013700
Synteny	Lsi07G013700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGGAGACCGTCGGGGCGGCCACTCCCTCCGCCGTCTCAGACCAAAGCTCCGCCGCCTCCTCCTCGCCCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTTCTCTTAGGGCTTGCTGCTTCCTCTCCTTTTTTCTTTTCTTTTTTTTTTACACCACTGAGATAAGATTATGGTTTCTGAAATCTTGGGTTTGTAAATTCAACTGACATTTCTCTTATCTTCGTTTCTTGCAATTATTGTTTCCCTCTGTGGTGATTTCAAGACTTGCCCTTTGTTGCTTCGCGTTTTTACTAAGGTACGTTTGAATTCATTGAGAAGCCTTCTTGTTTAATTTAATCTTTGTTCTTTTGAAAATTAAGAGAATAGGTATCTGTTTGACATTATTGACTTGCCATTACCTTTAATGATACTTCGTCTTTAATCAGTATGGCAGTTTCTTTTGTTGTGTGAAGATTGTGTTGAAGGTTTTCTTGTTGTCCACATGTTTTTCTTTTCCTGATTGGTGCACTTGGAAGAAATGGATTAAGAAAACTTTACTTTGATATTGAACTTGACTGGAGTTCATCTTTCCATGTATTTTCTTTGCATTCGTATACAAAATGTGCTTCATTTACATTTTTTGCAGGTTGGAGGTCATCACACTGATGAGGATTTTGCAATTAGAGGTAAGGAGCCCAAAGATGAGGTTCAGATTTATACGTGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTATGCACAAAACCTACATTAATCTGTTTCTTCTCTAGTGTTTTTCCATCTATTCTTGCTGCTGCTGTTCTGTATTTGACAAATGACCGACTAATTTTAGGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCCGATAAGCGCGGTCGATTTGTTTTGAAACAGGTTAGTGAATGTTAACAAAAATGTCAACTGCAACTGCAATGGAATTTAAATTATACATTCTCATTTATCTGCCAGATTTGGTCATTTACAATTGTACTGAATGTTTAGCAGTTTGCTTCTTAAATGCACTACTTGTTTGGGTAAATTGTTGTCATTTTCTTAATATGAAAACGATATGCTCATTCTTAAGGTGGGGGTGACACATTCTTATGGAAATGGGAGGAGGTTAGATGACAGCAAGGCATTGGGTGAACTGGACTTCCAGGTAAAATTAGGATTCATGAATTAAGTTATTTGAAGGTTTATGAGGAAACTGATATTTCTTCTGAATGTGTTTTAAATTTAAAAATGTAGATTGGAGACTATTTGGACGTGGCAATCCTGTAG

mRNA sequence

ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGGAGACCGTCGGGGCGGCCACTCCCTCCGCCGTCTCAGACCAAAGCTCCGCCGCCTCCTCCTCGCCCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTGGAGGTCATCACACTGATGAGGATTTTGCAATTAGAGGTAAGGAGCCCAAAGATGAGGTTCAGATTTATACGTGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCCGATAAGCGCGGTCGATTTGTTTTGAAACAGGTGGGGGTGACACATTCTTATGGAAATGGGAGGAGGTTAGATGACAGCAAGGCATTGGGTGAACTGGACTTCCAGATTGGAGACTATTTGGACGTGGCAATCCTGTAG

Coding sequence (CDS)

ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCAAGGGAGACCGTCGGGGCGGCCACTCCCTCCGCCGTCTCAGACCAAAGCTCCGCCGCCTCCTCCTCGCCCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTGGAGGTCATCACACTGATGAGGATTTTGCAATTAGAGGTAAGGAGCCCAAAGATGAGGTTCAGATTTATACGTGGAAAGATGCAACACTCCGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCCGATAAGCGCGGTCGATTTGTTTTGAAACAGGTGGGGGTGACACATTCTTATGGAAATGGGAGGAGGTTAGATGACAGCAAGGCATTGGGTGAACTGGACTTCCAGATTGGAGACTATTTGGACGTGGCAATCCTGTAG

Protein sequence

MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL

Homology

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BLAST of Lsi07G013700 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-41
Identity = 95/153 (62.09%), Postives = 112/153 (73.20%), Query Frame = 0


Query: 13  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKV-----------GGHHTDEDF 72
           A  A  QG   GRPLPPP +      PPRP+ EPVDREK            GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPR-GVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + +++V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GVTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 155
           G T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

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BLAST of Lsi07G013700 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-20
Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 45  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLD 155
            PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

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BLAST of Lsi07G013700 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-20
Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 45  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLD 155
            PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

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BLAST of Lsi07G013700 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-20
Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 45  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLD 155
            PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

[Close]

BLAST of Lsi07G013700 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-20
Identity = 59/123 (47.97%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 45  EPVDREKV------------GGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEV 104
           +P+DREK             G HH  ++F+ RG  P  E+QIYTW DATL+ELT LVKEV
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFS-RGNVPSSELQIYTWMDATLKELTSLVKEV 77

Query: 105 APEARRRNAKLSFAFVYPD-KRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLD 155
            PEAR++    +FA V+ D KR  + +K++G T S   G   DDS  L    FQIGDYLD
Sbjct: 78  YPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKG--TDDSMTLQSQKFQIGDYLD 137

[Close]

BLAST of Lsi07G013700 vs. ExPASy TrEMBL
Match: A0A6J1DES5 (histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN=LOC111020386 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 151/166 (90.96%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAPPQGRPS RPLPPPSQ KAPPPPPRPRFEPVDRE          
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           PDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

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BLAST of Lsi07G013700 vs. ExPASy TrEMBL
Match: A0A0A0L751 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.7e-75
Identity = 150/166 (90.36%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE---------- 60
           MDKRSRDEK SGAATAP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE          
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           PDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Lsi07G013700 vs. ExPASy TrEMBL
Match: A0A5D3D7E1 (Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001050 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 150/166 (90.36%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE---------- 60
           MDKRSRDEK SGAA AP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE          
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           PDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Lsi07G013700 vs. ExPASy TrEMBL
Match: A0A1S3BLT9 (histone deacetylase complex subunit SAP18-like OS=Cucumis melo OX=3656 GN=LOC103490959 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 150/166 (90.36%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE---------- 60
           MDKRSRDEK SGAA AP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE          
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           PDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Lsi07G013700 vs. ExPASy TrEMBL
Match: A0A6J1KTJ0 (histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LOC111498523 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.1e-73
Identity = 147/166 (88.55%), Postives = 148/166 (89.16%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAPPQGRPS RPLPPPSQ KAPPPPPR RFEPVDRE          
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVG HHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGSHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           PDKRGRFVLK VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 121 PDKRGRFVLKPVGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 166

[Close]

BLAST of Lsi07G013700 vs. NCBI nr
Match: XP_022152730.1 (histone deacetylase complex subunit SAP18-like [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 151/166 (90.96%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAPPQGRPS RPLPPPSQ KAPPPPPRPRFEPVDRE          
Sbjct: 1   MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQPKAPPPPPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHH+DEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHSDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           PDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Lsi07G013700 vs. NCBI nr
Match: KAG7028342.1 (Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291.2 bits (744), Expect = 5.3e-75
Identity = 147/155 (94.84%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKVGGHHTDED 60
           MDKRSRDEKMSGAATAPPQGRPS RPLPPPSQ KAPPPPPR RFEPVDREKVG HHTDED
Sbjct: 18  MDKRSRDEKMSGAATAPPQGRPSARPLPPPSQAKAPPPPPRARFEPVDREKVGSHHTDED 77

Query: 61  FAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQ 120
           FAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLK 
Sbjct: 78  FAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKP 137

Query: 121 VGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           VG THSYGNGRRLD SKALGELDFQIGDYLDVAI+
Sbjct: 138 VGTTHSYGNGRRLDGSKALGELDFQIGDYLDVAIM 172

[Close]

BLAST of Lsi07G013700 vs. NCBI nr
Match: XP_004147963.1 (histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothetical protein Csa_009634 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 2.0e-74
Identity = 150/166 (90.36%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE---------- 60
           MDKRSRDEK SGAATAP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE          
Sbjct: 1   MDKRSRDEKTSGAATAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHHTDEDFA+RGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           PDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Lsi07G013700 vs. NCBI nr
Match: XP_008448944.1 (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo] >TYK19452.1 histone deacetylase complex subunit SAP18-like [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 5.8e-74
Identity = 150/166 (90.36%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE---------- 60
           MDKRSRDEK SGAA AP QGRPSGRPLPPPSQTKAPPP PRPRFEPVDRE          
Sbjct: 1   MDKRSRDEKTSGAAAAPTQGRPSGRPLPPPSQTKAPPPNPRPRFEPVDREKTCPLLLRVF 60

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 61  TKVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120

Query: 121 PDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           PDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 121 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 166

[Close]

BLAST of Lsi07G013700 vs. NCBI nr
Match: XP_038905116.1 (histone deacetylase complex subunit SAP18-like [Benincasa hispida])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 149/166 (89.76%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MDKRSRDEKMSGAATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDRE---------- 60
           MDKRSRDEKMSGAATAP QGRPSGRPLPPP   KAPPPPPRPRFEPVDRE          
Sbjct: 17  MDKRSRDEKMSGAATAPSQGRPSGRPLPPP---KAPPPPPRPRFEPVDREKTCPLLLRVF 76

Query: 61  -KVGGHHTDEDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 120
            KVGGHHTD+DFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY
Sbjct: 77  TKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVY 136

Query: 121 PDKRGRFVLKQVGVTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 156
           PDKRGRFVLKQVG+THSYGNGRRLDDSKALGELDFQIGDYLDVAIL
Sbjct: 137 PDKRGRFVLKQVGMTHSYGNGRRLDDSKALGELDFQIGDYLDVAIL 179

[Close]

BLAST of Lsi07G013700 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-42
Identity = 95/153 (62.09%), Postives = 112/153 (73.20%), Query Frame = 0


Query: 13  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKV-----------GGHHTDEDF 72
           A  A  QG   GRPLPPP +      PPRP+ EPVDREK            GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPR-GVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G + +++V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREV 121

Query: 133 GVTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 155
           G T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151

[Close]

BLAST of Lsi07G013700 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-40
Identity = 95/153 (62.09%), Postives = 109/153 (71.24%), Query Frame = 0


Query: 13  AATAPPQGRPSGRPLPPPSQTKAPPPPPRPRFEPVDREKV-----------GGHHTDEDF 72
           A  A  QG   GRPLPPP +      PPRP+ EPVDREK            GGHHT ED+
Sbjct: 2   AEAARRQG--GGRPLPPPPR-GVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDY 61

Query: 73  AIRGKEPKDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQV 132
           A+RGKEPKDEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFAFVYP+ +G +    V
Sbjct: 62  AVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGY---NV 121

Query: 133 GVTHSYGNGRRLDDSKALGELDFQIGDYLDVAI 155
           G T +Y N ++ DDSK L EL F+IGDYLDVAI
Sbjct: 122 GETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 148

The following BLAST results are available for this feature:

BLAST of Lsi07G013700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64644	3.0e-41	62.09	Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2...	[more]
Q3T022	1.0e-20	47.97	Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV...	[more]
O00422	1.0e-20	47.97	Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ...	[more]
Q5RDT5	1.0e-20	47.97	Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ...	[more]
O55128	1.3e-20	47.97	Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1...	[more]

BLAST of Lsi07G013700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DES5	1.1e-75	90.96	histone deacetylase complex subunit SAP18-like OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0L751	9.7e-75	90.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G038150 PE=3 SV=1	[more]
A0A5D3D7E1	2.8e-74	90.36	Histone deacetylase complex subunit SAP18-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BLT9	2.8e-74	90.36	histone deacetylase complex subunit SAP18-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1KTJ0	9.1e-73	88.55	histone deacetylase complex subunit SAP18-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Lsi07G013700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152730.1	2.4e-75	90.96	histone deacetylase complex subunit SAP18-like [Momordica charantia]	[more]
KAG7028342.1	5.3e-75	94.84	Histone deacetylase complex subunit SAP18, partial [Cucurbita argyrosperma subsp...	[more]
XP_004147963.1	2.0e-74	90.36	histone deacetylase complex subunit SAP18 [Cucumis sativus] >KGN55941.1 hypothet...	[more]
XP_008448944.1	5.8e-74	90.36	PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo] >TYK194...	[more]
XP_038905116.1	1.1e-72	89.76	histone deacetylase complex subunit SAP18-like [Benincasa hispida]	[more]

BLAST of Lsi07G013700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45640.1	2.2e-42	62.09	SIN3 associated polypeptide P18	[more]
AT2G45640.2	2.0e-40	62.09	SIN3 associated polypeptide P18	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010516	Sin3 associated polypeptide p18	PFAM	PF06487	SAP18	coord: 52..154 e-value: 1.6E-27 score: 96.4
IPR010516	Sin3 associated polypeptide p18	PANTHER	PTHR13082	SAP18	coord: 14..155
IPR042534	Sin3 associated polypeptide p18 superfamily	GENE3D	3.10.20.550	ASAP complex, SAP18 subunit	coord: 47..155 e-value: 3.6E-35 score: 122.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..42
None	No IPR available	PANTHER	PTHR13082:SF4	DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATED	coord: 14..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G013700.1	Lsi07G013700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003714	transcription corepressor activity