Lsi07G013300 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACTTGACATCGAATCACGCATCTCCTGTTCTCACTGAACCTGCACCAATGAATAAATCAAGGCTAGGAATCCATCATGCTATTTTGCCTTACTCTCAACCAGGTGGTTCCTTTCCCCCAAGTAAATATATCACAATTCCAAGGAAAAAGTCGGGAAAATTTGATGATGTCTGGTCCAATGGTTGGTTGGATGCAATGAAATCCTCTTCTCCTCCTCGTAAGAAGCTAATTAAGGATTTTGATGTTGAGTTTCCTTCAGATGACGATACTGATGTTGCTTATAGCTCCTGGATGGTAATGTTTGATGCTTGTGAATCTTAGCTACCTCCTTCTCTAATTTTTCCAGTTCAATTTACTCATTTTTTTTTGTTTCTGGTTCTGCAGCTGAAGTATCCTTCAGCACTCAACTCTCTAGAGCAAATTACCAGTTACGCAAAAAATAAGAAAATAGCTGTTTTTTTGGACTATGATGGGACCCTTTCTCCAATAGTAGATGATCCAGATTGTGCTGTTATGTCTAATGCTGTACGTCTAGCATTCTAACGGCAATGTCCAACCATACCTGTCTTATTCCTTTCTATTTTCTGAACAAAATAATTTCTTTTTTCAGATGCGTTCTGCTGTAAGAAATGTTGCCAAATATTTTCCAACGGCAATCATTAGTGGAAGAAAGCGAGAAAAGGTAAGTGGATAATCTGTCCGAAATTCTCTGTTTTCTGGCTTTTGTCAATAACTCAATTTCTTAAGGAACTAAAATTACCTTCTTTTTTTTGTAACTTTTTTTTTCTTTCAGGTTTCTGACTTGGTAGGACTAACAGAACTCTATTATGCTGGAAGTCATGGGATGGATATCATCGGCCCTGCAAGTCAAACAGTGCTGAATTCCCATCCCAACTGTATTGGATCTACTGACCAACAGGTGAGCGATGGAATAAAATAAGAACCTTGTGTTCTAATATTAACTCGTAGCTTTTTTTCTCTTTTTATCCTTAAGCATGATTATCACACGTTCATAATTTGTGATTTCGTTAACTTCAACTCCCATGAACTCTTTTTTAACAAAACAGGGTAAGGATGTTAATCTGTTCCAGCCCGCAAGGGAATTCTTACCCATGATAGACGAGGTGCACCTTATTTTTTCTTCTTATTTACATCTTCAAGTCTTAGTATAATGTTTCAAACTAATAATGCACAAGAAATTTAATTATTTGTTGTAGGTTTTTGGAACCCTCGTCGAGAAGACAAAAGATATTAAAGGCGCAAAAGTTGAAAATCACAAGTTTTGTGCCGCTGTACATTACCGCAATGTAGATGAGAAGGTAAAATTTCAGGCTCTCTCTGATATTGTTTCTATCCACTTCAAAGCTTAGGCTTTACAATCTGGGTTCTTAAACATTGTTCTCCTTTTTTCTCTTCTTCAGAATTGGCCTACAATAGCGCAATGTGTTCATGATGTACTAAAAGACCACCCACGTTTACGATTAACACATGGGCGGAAGGTATGTTGTTTTGTTTTTTTGCAACGGTTCTGTATACAAGTCATGTGCAAACTTTCATTATTTCGAGTTTGTTTTTTCCCGTTGTCTTACTACTGCTCCTATTCTGTTATAGGTTTTAGAGATCCGTCCAGTGATCGATTGGAACAAGGGAAAAGCAGTTGAATTTCTGCTAGAATCTCTTGGTAATGGTTTGTTTTCTGTGCTAACTGTCAGATGAATGCTATGAGTTAGCTTTGCGTATTCTCATCCCAAATCGATAATCTTGCAGGATTGAACTCAAGTGAAGACGTGCTCCCTATCTTCATTGGTGATGACAGAACTGATGAAGATGCTTTTAAGGTAACAAAAATCCGGATCTCCCAGTAATGATACTGAATCATATGGTGGATCGAGTTATAAATTTCTTTTCACTCTGTTTCTTGCAGGTGCTGCGGGAGAGAAACCAAGGCTACGGCATCTTGGTGTCTTCTATGCCAAAAGAGACCAACGCATTCTACTCTCTTAGGGATCCCTCAGAGGTGAGTGTGCCTTCTATAACCTTTTTTCAATACATCATATGTTAAAATTAACATATATACAAAACTGATAGGGGCTATTTTAAGAGTTTTATCAAATTATAGGGACTATTTATGAGTTTTTATCACTCCATAGGAAGTTAATTCTAATTTTTAAAATCATAGGGATCAAATTTATATTTTAATTTTTTAAAATTGTTATTGGGTATTTTTTATTTTTCAGTAAAATAAGATAGAGCATTATCTATAATATCATTCACATCAATTGACGTGGTTGATGTAAACGATTTTAATATTTCATTCTTTTAGAACAATTTCGAATGTTGGAGTATAGTTTTTGGAATAAATTTAGAAAATTCAAAGTAAAATATGAAGCTGATAGGATAGATTTGGAAATGAAGGGTTGTAAATATTAAGAGGAAGTTAAATAGTGAAGTAAAATATATGAATGATGAAATGGTGCAGGTAATGGAATTCCTGAGAGGATTGGTAAGAAGCCGGAAGAAGGTGGGTGTGGGTGGTGGTGAAGCCGGGAAAAAGTAATTGATTAGGTACACAGAATCCAACCAGTTTGTGTGTGTGTGGAATTTAGAATGGGGAAGTCAAGTCGCGTCATCATTGACCTCTTTTTTTCTTCTTTTTTTTTTCTTTTTTTTTTTTTGGTAATAATTCCTATGGGGTCTGTTTAGCTGGGTTTCGTTTCAACCAATACTGCTATTTTGTGGGGTGGGGTCTAGGTGTTTTTTTAACTGTTAGCAGCACAGAAATGTTCCAAATGTTTCTATTTATTTTCATTATTTCAACTCTCTCTCTCTCTCTCTCTCTCACAACATGTAAAACGTTGGAATTACTGTGTGTAATGAGACTGCAGTTTGATTTTCTACTTCCTCAAA ATGGACTTGACATCGAATCACGCATCTCCTGTTCTCACTGAACCTGCACCAATGAATAAATCAAGGCTAGGAATCCATCATGCTATTTTGCCTTACTCTCAACCAGGTGGTTCCTTTCCCCCAAGTAAATATATCACAATTCCAAGGAAAAAGTCGGGAAAATTTGATGATGTCTGGTCCAATGGTTGGTTGGATGCAATGAAATCCTCTTCTCCTCCTCGTAAGAAGCTAATTAAGGATTTTGATGTTGAGTTTCCTTCAGATGACGATACTGATGTTGCTTATAGCTCCTGGATGCTGAAGTATCCTTCAGCACTCAACTCTCTAGAGCAAATTACCAGTTACGCAAAAAATAAGAAAATAGCTGTTTTTTTGGACTATGATGGGACCCTTTCTCCAATAGTAGATGATCCAGATTGTGCTGTTATGTCTAATGCTATGCGTTCTGCTGTAAGAAATGTTGCCAAATATTTTCCAACGGCAATCATTAGTGGAAGAAAGCGAGAAAAGGTTTCTGACTTGGTAGGACTAACAGAACTCTATTATGCTGGAAGTCATGGGATGGATATCATCGGCCCTGCAAGTCAAACAGTGCTGAATTCCCATCCCAACTGTATTGGATCTACTGACCAACAGGTGAGCGATGGAATAAAATAAGAACCTTGTGTTCTAATATTAACTCGTAGCTTTTTTTCTCTTTTTATCCTTAAGCATGATTATCACACGTTCATAATTTGTGATTTCGTTAACTTCAACTCCCATGAACTCTTTTTTAACAAAACAGGGTAAGGATGTTAATCTGTTCCAGCCCGCAAGGGAATTCTTACCCATGATAGACGAGGTTTTTGGAACCCTCGTCGAGAAGACAAAAGATATTAAAGGCGCAAAAGTTGAAAATCACAAGTTTTGTGCCGCTGTACATTACCGCAATGTAGATGAGAAGAATTGGCCTACAATAGCGCAATGTGTTCATGATGTACTAAAAGACCACCCACGTTTACGATTAACACATGGGCGGAAGGTTTTAGAGATCCGTCCAGTGATCGATTGGAACAAGGGAAAAGCAGTTGAATTTCTGCTAGAATCTCTTGGATTGAACTCAAGTGAAGACGTGCTCCCTATCTTCATTGGTGATGACAGAACTGATGAAGATGCTTTTAAGGTGCTGCGGGAGAGAAACCAAGGCTACGGCATCTTGGTGTCTTCTATGCCAAAAGAGACCAACGCATTCTACTCTCTTAGGGATCCCTCAGAGGTAATGGAATTCCTGAGAGGATTGGTAAGAAGCCGGAAGAAGGTGGGTGTGGGTGGTGGTGAAGCCGGGAAAAAGTAATTGATTAGGTACACAGAATCCAACCAGTTTGTGTGTGTGTGGAATTTAGAATGGGGAAGTCAAGTCGCGTCATCATTGACCTCTTTTTTTCTTCTTTTTTTTTTCTTTTTTTTTTTTTGGTAATAATTCCTATGGGGTCTGTTTAGCTGGGTTTCGTTTCAACCAATACTGCTATTTTGTGGGGTGGGGTCTAGGTGTTTTTTTAACTGTTAGCAGCACAGAAATGTTCCAAATGTTTCTATTTATTTTCATTATTTCAACTCTCTCTCTCTCTCTCTCTCTCACAACATGTAAAACGTTGGAATTACTGTGTGTAATGAGACTGCAGTTTGATTTTCTACTTCCTCAAA ATGGACTTGACATCGAATCACGCATCTCCTGTTCTCACTGAACCTGCACCAATGAATAAATCAAGGCTAGGAATCCATCATGCTATTTTGCCTTACTCTCAACCAGGTGGTTCCTTTCCCCCAAGTAAATATATCACAATTCCAAGGAAAAAGTCGGGAAAATTTGATGATGTCTGGTCCAATGGTTGGTTGGATGCAATGAAATCCTCTTCTCCTCCTCGTAAGAAGCTAATTAAGGATTTTGATGTTGAGTTTCCTTCAGATGACGATACTGATGTTGCTTATAGCTCCTGGATGCTGAAGTATCCTTCAGCACTCAACTCTCTAGAGCAAATTACCAGTTACGCAAAAAATAAGAAAATAGCTGTTTTTTTGGACTATGATGGGACCCTTTCTCCAATAGTAGATGATCCAGATTGTGCTGTTATGTCTAATGCTATGCGTTCTGCTGTAAGAAATGTTGCCAAATATTTTCCAACGGCAATCATTAGTGGAAGAAAGCGAGAAAAGGTTTCTGACTTGGTAGGACTAACAGAACTCTATTATGCTGGAAGTCATGGGATGGATATCATCGGCCCTGCAAGTCAAACAGTGCTGAATTCCCATCCCAACTGTATTGGATCTACTGACCAACAGGTGAGCGATGGAATAAAATAA MDLTSNHASPVLTEPAPMNKSRLGIHHAILPYSQPGGSFPPSKYITIPRKKSGKFDDVWSNGWLDAMKSSSPPRKKLIKDFDVEFPSDDDTDVAYSSWMLKYPSALNSLEQITSYAKNKKIAVFLDYDGTLSPIVDDPDCAVMSNAMRSAVRNVAKYFPTAIISGRKREKVSDLVGLTELYYAGSHGMDIIGPASQTVLNSHPNCIGSTDQQVSDGIK Homology
BLAST of Lsi07G013300 vs. ExPASy Swiss-Prot
Match: Q9SUW0 (Probable trehalose-phosphate phosphatase G OS=Arabidopsis thaliana OX=3702 GN=TPPG PE=2 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 7.2e-65 Identity = 129/213 (60.56%), Postives = 156/213 (73.24%), Query Frame = 0
BLAST of Lsi07G013300 vs. ExPASy Swiss-Prot
Match: O64896 (Trehalose-phosphate phosphatase A OS=Arabidopsis thaliana OX=3702 GN=TPPA PE=1 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 4.4e-62 Identity = 126/215 (58.60%), Postives = 156/215 (72.56%), Query Frame = 0
BLAST of Lsi07G013300 vs. ExPASy Swiss-Prot
Match: Q9SU39 (Probable trehalose-phosphate phosphatase F OS=Arabidopsis thaliana OX=3702 GN=TPPF PE=2 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 9.8e-62 Identity = 129/213 (60.56%), Postives = 152/213 (71.36%), Query Frame = 0
BLAST of Lsi07G013300 vs. ExPASy Swiss-Prot
Match: Q9FWQ2 (Probable trehalose-phosphate phosphatase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPP2 PE=1 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 2.0e-51 Identity = 111/216 (51.39%), Postives = 152/216 (70.37%), Query Frame = 0
BLAST of Lsi07G013300 vs. ExPASy Swiss-Prot
Match: Q75WV3 (Probable trehalose-phosphate phosphatase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPP1 PE=1 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 2.6e-46 Identity = 109/197 (55.33%), Postives = 139/197 (70.56%), Query Frame = 0
BLAST of Lsi07G013300 vs. ExPASy TrEMBL
Match: A0A1S3BLD5 (Trehalose 6-phosphate phosphatase OS=Cucumis melo OX=3656 GN=LOC103490916 PE=3 SV=1) HSP 1 Score: 422.9 bits (1086), Expect = 7.9e-115 Identity = 206/215 (95.81%), Postives = 208/215 (96.74%), Query Frame = 0
BLAST of Lsi07G013300 vs. ExPASy TrEMBL
Match: A0A5D3D7H3 (Trehalose 6-phosphate phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001470 PE=3 SV=1) HSP 1 Score: 422.9 bits (1086), Expect = 7.9e-115 Identity = 206/215 (95.81%), Postives = 208/215 (96.74%), Query Frame = 0
BLAST of Lsi07G013300 vs. ExPASy TrEMBL
Match: A0A0A0L4C9 (Trehalose 6-phosphate phosphatase OS=Cucumis sativus OX=3659 GN=Csa_3G033800 PE=3 SV=1) HSP 1 Score: 418.3 bits (1074), Expect = 2.0e-113 Identity = 203/213 (95.31%), Postives = 206/213 (96.71%), Query Frame = 0
BLAST of Lsi07G013300 vs. ExPASy TrEMBL
Match: A0A6J1DJ26 (Trehalose 6-phosphate phosphatase OS=Momordica charantia OX=3673 GN=LOC111021365 PE=3 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 8.2e-112 Identity = 203/212 (95.75%), Postives = 205/212 (96.70%), Query Frame = 0
BLAST of Lsi07G013300 vs. ExPASy TrEMBL
Match: A0A6J1KT28 (Trehalose 6-phosphate phosphatase OS=Cucurbita maxima OX=3661 GN=LOC111498409 PE=3 SV=1) HSP 1 Score: 410.6 bits (1054), Expect = 4.1e-111 Identity = 200/212 (94.34%), Postives = 205/212 (96.70%), Query Frame = 0
BLAST of Lsi07G013300 vs. NCBI nr
Match: XP_038876803.1 (probable trehalose-phosphate phosphatase F [Benincasa hispida] >XP_038876804.1 probable trehalose-phosphate phosphatase F [Benincasa hispida] >XP_038876805.1 probable trehalose-phosphate phosphatase F [Benincasa hispida] >XP_038876806.1 probable trehalose-phosphate phosphatase F [Benincasa hispida]) HSP 1 Score: 425.2 bits (1092), Expect = 3.3e-115 Identity = 208/215 (96.74%), Postives = 209/215 (97.21%), Query Frame = 0
BLAST of Lsi07G013300 vs. NCBI nr
Match: XP_008448886.1 (PREDICTED: probable trehalose-phosphate phosphatase F [Cucumis melo] >XP_008448887.1 PREDICTED: probable trehalose-phosphate phosphatase F [Cucumis melo] >XP_008448888.1 PREDICTED: probable trehalose-phosphate phosphatase F [Cucumis melo] >XP_016900569.1 PREDICTED: probable trehalose-phosphate phosphatase F [Cucumis melo] >TYK19492.1 putative trehalose-phosphate phosphatase F [Cucumis melo var. makuwa]) HSP 1 Score: 422.9 bits (1086), Expect = 1.6e-114 Identity = 206/215 (95.81%), Postives = 208/215 (96.74%), Query Frame = 0
BLAST of Lsi07G013300 vs. NCBI nr
Match: XP_011650418.1 (probable trehalose-phosphate phosphatase F [Cucumis sativus] >XP_011650419.1 probable trehalose-phosphate phosphatase F [Cucumis sativus] >XP_031738724.1 probable trehalose-phosphate phosphatase F [Cucumis sativus] >XP_031738725.1 probable trehalose-phosphate phosphatase F [Cucumis sativus] >KAE8650071.1 hypothetical protein Csa_010142 [Cucumis sativus]) HSP 1 Score: 417.5 bits (1072), Expect = 6.9e-113 Identity = 203/215 (94.42%), Postives = 206/215 (95.81%), Query Frame = 0
BLAST of Lsi07G013300 vs. NCBI nr
Match: XP_022153998.1 (probable trehalose-phosphate phosphatase F [Momordica charantia]) HSP 1 Score: 412.9 bits (1060), Expect = 1.7e-111 Identity = 203/212 (95.75%), Postives = 205/212 (96.70%), Query Frame = 0
BLAST of Lsi07G013300 vs. NCBI nr
Match: KAG7028374.1 (putative trehalose-phosphate phosphatase G, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 410.6 bits (1054), Expect = 8.4e-111 Identity = 200/212 (94.34%), Postives = 205/212 (96.70%), Query Frame = 0
BLAST of Lsi07G013300 vs. TAIR 10
Match: AT4G22590.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 248.4 bits (633), Expect = 5.1e-66 Identity = 129/213 (60.56%), Postives = 156/213 (73.24%), Query Frame = 0
BLAST of Lsi07G013300 vs. TAIR 10
Match: AT5G51460.2 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 243.8 bits (621), Expect = 1.3e-64 Identity = 126/214 (58.88%), Postives = 156/214 (72.90%), Query Frame = 0
BLAST of Lsi07G013300 vs. TAIR 10
Match: AT5G51460.3 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 239.2 bits (609), Expect = 3.1e-63 Identity = 126/215 (58.60%), Postives = 156/215 (72.56%), Query Frame = 0
BLAST of Lsi07G013300 vs. TAIR 10
Match: AT5G51460.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 239.2 bits (609), Expect = 3.1e-63 Identity = 126/215 (58.60%), Postives = 156/215 (72.56%), Query Frame = 0
BLAST of Lsi07G013300 vs. TAIR 10
Match: AT4G12430.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein ) HSP 1 Score: 238.0 bits (606), Expect = 7.0e-63 Identity = 129/213 (60.56%), Postives = 152/213 (71.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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