Lsi07G012870 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G012870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2
Location	chr07: 18825111 .. 18827514 (+)
RNA-Seq Expression	Lsi07G012870
Synteny	Lsi07G012870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAACCCTCAACCCCTTCAGTACAGTCGTTTCTTGTAGAATTCCCAGATCTCCGCTCTTCTTTCATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCTCAGTCGTCTCTCAGAACATTCGTCCGTACGAATCCGTCGGCCAAATCTTCATCTTCTCCATTCCCTCTACCTTCCAAATCCCCTGCACCATCTGTTCGCCGATTCTCTCTCGCCAGGTATCTCTCTTTATCCTTTCATTTCTCCTTGTTTTGTATATCTTGTTGTGCGTTGTTTCAATTTGTTCTTTGTTCTTTTGCAAACCTTCTTAATCTACTGTTAGGTCTCCTTCGGAGCTGGGATGCGTGCAATCACTTTTGCCATTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGGTATTCTCTGCTGCACCTCTCCCGGCCTCTAACATGAAATATTGTACTTTCTTTTGAAGTGTGAGTAGCTTTTTTATGCATTAATCTATAGACTTTCCCTTTTATTGCTCTACAATTGTTTGTCTGTGTTCTTGTGTTGGTATTTGCTGATTCTTGTTGTCTTTATCGTTGTTGTGTTGTTCCGAAAATCTTGCAGATTGTGTATGAAGTGGAATGTTTCTTGATATTTTCAGGGGAGGTTTCTTTCTTGTCGTCATTCTGTTAAAAGTGGTGAAATTTTTGTTTAGAAGTTTAGAATACTGGATTCTTGGTTATATTTAAGGAGGTTGTTGGTAAAGTTATGTAAAAGATGGGCTAAGCTAGGACGTTGAAGTTAACCATCTTAGGAAGAGAAACCATCGTAGGATTGGTCCTTCCTTTGCCTTCGCTATATAGTTTCATTGTTTATTGGTTGCAACTTTTGTCCCTCAGTTCAATTGGTCATTTTCTCGGGTAAAATTAGTTACTAGAACTGGAATGGAATGGCTTTGGTTGTTGACTGGGGACCTTGAAACTGACTGGAGCGTTTGGTTCCTGCAGGCACATAATATCGGTTGTCAATATGCTTGAAAGAAATAGATTGGAAGTTTACGGAGCTTTCCGATTATGGTGCAGTGAATTGATTTCAAGTATGAAACTAATTTATCTCATAGTCGTCCTAAAATGTCGAAGATATTCAGATTTCTATTATTGTGAGGAACTAGGGGTCTCTGTCAGTGGTGGGTTGGCGCCACTTTTAATTACCATATGAAATTGAAGTGTCACATCCTTTCTCATTCAGCAATAGTCAATTCCTGAATCTTTAAATCTTAAGAGTTTCCCTTGGAAAACTTTTGACTTGAAGAGTGAACCGTAAATTTAAGAGAATGGAATGACAAGTAGGTTTTCCCATCAATCAGCTTTGTCTCTGCGATCTAGCTATCATCATCCTGAAAAAAATTATCTCGATAAGAATCTGTTCTGTTCTAATGGAGATCATTACATAGAGTAAAGGGATGATCCAGTCCGGTCAATAGTTTTAGTTTTAGTTAATTGTAAATCCATTATGTGAACTAAGCTTTGTTTGTTCGATGATCTGCATCATTTTTGTTTACATCAATTGTGTGTAACTCACAGATAAGCTTAATGATTGTACCATTAATTTCTTTTATCAAATAATCTATATGACATAACTTCTCATTGCCCCAGATGCAATTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGGTGGGCCAGTCACTCTATGCTTCACTAATCTAGAAATGTCACTTTTGTGTGAGGTGTAAAGGTTCCATAGATGTTAGTTCTTAGTGCCTTTGGTTTACCTGATGTAAATGTAATGAAACCCATCTTTCCTATGCAAATACACGCACAACTCGACTAATCTTACGGGACAACGGTCTAACTCAAGAAAAATCCATATTACTCGAGAATCATTTATTAGTTGGCATTGTTGACACTATTGTCTCTGCAACTGTAGAAGTAGAATTAGATTGCTGCATCAGTTATATTGAATGAGATATGAAGAGTCATGTTGCATTTTTGGACTCGATTCCTGCAGTAAACCTTACCGATATTCTTAGTTTGTGTTTCTTATTTTGTATTTGTATTCTGTGGCTGCAGAGTTAGGTTTATCCGTTCCAAGGTGACTTCTTTGGGCAGTTTGTTGCAGTGACAAGGGGATATCGGCAATGGTTTAGAGGATTTCTTTTACGAACTGTGACCAGTACTGCTCAATTTGGTTAACTAATTTTGGTTCGTCTAAACGACAGATTGTGTTGAAATAAGAATATAGTGATTCTAGTTCTCATGGCAACTCAGGATATCATATTTTTGCCATTGTTGTGGGTTATAAATGTTTGATCTGTGTCATACATTGGATATGTACGTTTCTTTTTTTTTTTTTTGAGATACACAT

mRNA sequence

CTAAAACCCTCAACCCCTTCAGTACAGTCGTTTCTTGTAGAATTCCCAGATCTCCGCTCTTCTTTCATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCTCAGTCGTCTCTCAGAACATTCGTCCGTACGAATCCGTCGGCCAAATCTTCATCTTCTCCATTCCCTCTACCTTCCAAATCCCCTGCACCATCTGTTCGCCGATTCTCTCTCGCCAGGTCTCCTTCGGAGCTGGGATGCGTGCAATCACTTTTGCCATTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGACTTTCCCTTTTATTGCTCTACAATTGTTTGTCTGTGTTCTTGTGTTGGTATTTGCTGATTCTTGTTGTCTTTATCGTTGTTGTGTTGTTCCGAAAATCTTGCAGATTGCACATAATATCGGTTGTCAATATGCTTGAAAGAAATAGATTGGAAGTTTACGGAGCTTTCCGATTATGGTGCAGTGAATTGATTTCAAATGCAATTGATGGTACGTGAGACATATTTGCTGTTTTTGAAGAGTTAGGTTTATCCGTTCCAAGGTGACTTCTTTGGGCAGTTTGTTGCAGTGACAAGGGGATATCGGCAATGGTTTAGAGGATTTCTTTTACGAACTGTGACCAGTACTGCTCAATTTGGTTAACTAATTTTGGTTCGTCTAAACGACAGATTGTGTTGAAATAAGAATATAGTGATTCTAGTTCTCATGGCAACTCAGGATATCATATTTTTGCCATTGTTGTGGGTTATAAATGTTTGATCTGTGTCATACATTGGATATGTACGTTTCTTTTTTTTTTTTTTGAGATACACAT

Coding sequence (CDS)

ATGGCTTCCGCTTGCCAAAGAATTGCGAGCAGAATCTCTCAGTCGTCTCTCAGAACATTCGTCCGTACGAATCCGTCGGCCAAATCTTCATCTTCTCCATTCCCTCTACCTTCCAAATCCCCTGCACCATCTGTTCGCCGATTCTCTCTCGCCAGGTCTCCTTCGGAGCTGGGATGCGTGCAATCACTTTTGCCATTTCACGACGCGGTTGCTGGAGCGAGAATGATTTCGTGTCTGAGCACAAATTCGAGGAGTTGTCGTGCGCTTTCTCAGGACTTTCCCTTTTATTGCTCTACAATTGTTTGTCTGTGTTCTTGTGTTGGTATTTGCTGA

Protein sequence

MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQDFPFYCSTIVCLCSCVGIC

Homology

[Close]

BLAST of Lsi07G012870 vs. ExPASy TrEMBL
Match: A0A0A0L1I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 98/120 (81.67%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 1   MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
           MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLPSKS APSVRRFSLARSPSELGCV
Sbjct: 1   MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQDFP-------FYCSTIV-------CLCSC 107
           QSLLPFHDAVAGARMISCLSTNSRSCRALSQDFP       F C   V       CLC C
Sbjct: 61  QSLLPFHDAVAGARMISCLSTNSRSCRALSQDFPFLLLYNLFVCVLFVLVFADSCCLCHC 120

[Close]

BLAST of Lsi07G012870 vs. ExPASy TrEMBL
Match: A0A1S3BL94 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490878 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
          MASACQRIASRISQSS RTFVRTN SAKSSSS FPLPSKS APSVRRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQD 93
          QSLLPFHDAVAGARMISCLSTNSRSCRALSQ+
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQE 92

[Close]

BLAST of Lsi07G012870 vs. ExPASy TrEMBL
Match: A0A1S3BKM3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490878 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.7e-36
Identity = 87/91 (95.60%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
          MASACQRIASRISQSS RTFVRTN SAKSSSS FPLPSKS APSVRRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHDAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Lsi07G012870 vs. ExPASy TrEMBL
Match: A0A6J1DJ71 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111021400 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 8.5e-33
Identity = 81/92 (88.04%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
          MASAC RIASRISQSS R  VRT    KS SSPFPLPSKS APSVRRFSLARSPSELGCV
Sbjct: 1  MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQD 93
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQD
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQD 92

[Close]

BLAST of Lsi07G012870 vs. ExPASy TrEMBL
Match: A0A6J1DKL6 (uncharacterized protein LOC111021400 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111021400 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.5e-32
Identity = 80/92 (86.96%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
          MASAC RIASRISQSS R  VRT    KS SSPFPLPSKS APSVRRFSLARSPSELGCV
Sbjct: 1  MASACHRIASRISQSSFRAAVRTQSPVKSPSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQD 93
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQ+
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQE 92

[Close]

BLAST of Lsi07G012870 vs. NCBI nr
Match: XP_004147214.1 (uncharacterized protein LOC101221008 isoform X2 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 5.3e-37
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
          MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLPSKS APSVRRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQD 93
          QSLLPFHDAVAGARMISCLSTNSRSCRALSQ+
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQE 92

[Close]

BLAST of Lsi07G012870 vs. NCBI nr
Match: XP_004147213.1 (uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 9.0e-37
Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
          MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLPSKS APSVRRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHDAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Lsi07G012870 vs. NCBI nr
Match: KAE8650054.1 (hypothetical protein Csa_010079 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 9.0e-37
Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
          MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLPSKS APSVRRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSPFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 92
          QSLLPFHDAVAGARMISCLSTNSRSCRALSQ
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQ 91

[Close]

BLAST of Lsi07G012870 vs. NCBI nr
Match: XP_038903088.1 (protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X3 [Benincasa hispida])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
          MASACQRIASRISQSS RTFVRTN SAKSSSSPFPLP+KS APSVRRFSLARSPSELGC+
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNTSAKSSSSPFPLPAKSTAPSVRRFSLARSPSELGCI 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQD 93
          QSLLPFH+AVAGARMISCLSTNSRSCRALSQD
Sbjct: 61 QSLLPFHNAVAGARMISCLSTNSRSCRALSQD 92

[Close]

BLAST of Lsi07G012870 vs. NCBI nr
Match: XP_008448836.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 4.5e-36
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVRTNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELGCV 60
          MASACQRIASRISQSS RTFVRTN SAKSSSS FPLPSKS APSVRRFSLARSPSELGCV
Sbjct: 1  MASACQRIASRISQSSFRTFVRTNSSAKSSSSQFPLPSKSTAPSVRRFSLARSPSELGCV 60

Query: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQD 93
          QSLLPFHDAVAGARMISCLSTNSRSCRALSQ+
Sbjct: 61 QSLLPFHDAVAGARMISCLSTNSRSCRALSQE 92

[Close]

BLAST of Lsi07G012870 vs. TAIR 10
Match: AT4G17310.2 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-17
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVR--TNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELG 60
          MASAC+++ +R S SSL++ +R  T  ++ +SS+ F LPS+      R FS +R PSELG
Sbjct: 1  MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQ----PTRHFSFSRCPSELG 60

Query: 61 CVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD 93
          CVQSLLP H  VA AR+ SCLST SRS RALSQ+
Sbjct: 61 CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQE 90

[Close]

BLAST of Lsi07G012870 vs. TAIR 10
Match: AT4G17310.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-17
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 1  MASACQRIASRISQSSLRTFVR--TNPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSELG 60
          MASAC+++ +R S SSL++ +R  T  ++ +SS+ F LPS+      R FS +R PSELG
Sbjct: 1  MASACRKLFNRASVSSLKSTLRSTTGSTSAASSAGFRLPSQ----PTRHFSFSRCPSELG 60

Query: 61 CVQSLLPFHDAVAGARMISCLSTNSRSCRALSQ 92
          CVQSLLP H  VA AR+ SCLST SRS RALSQ
Sbjct: 61 CVQSLLPLHSTVAAARLTSCLSTTSRSSRALSQ 89

[Close]

BLAST of Lsi07G012870 vs. TAIR 10
Match: AT5G47455.4 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 125 Blast hits to 125 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 5.5e-16
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 7   RIASRISQSSLRTFVRT----------NPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSE 66
           R  SR S SS ++ +R+          +  A +SS+ F +PSK  A  + RFS +R PSE
Sbjct: 4   RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67  LGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQDFPF 96
           LGCVQSLLP H  VA AR+ SCLST SRS RAL+QD  F
Sbjct: 64  LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQDGTF 102

[Close]

BLAST of Lsi07G012870 vs. TAIR 10
Match: AT5G47455.5 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 132 Blast hits to 132 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-15
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 7  RIASRISQSSLRTFVRT----------NPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSE 66
          R  SR S SS ++ +R+          +  A +SS+ F +PSK  A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD 93
          LGCVQSLLP H  VA AR+ SCLST SRS RAL+QD
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQD 99

[Close]

BLAST of Lsi07G012870 vs. TAIR 10
Match: AT5G47455.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 132 Blast hits to 132 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-15
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 7  RIASRISQSSLRTFVRT----------NPSAKSSSSPFPLPSKSPAPSVRRFSLARSPSE 66
          R  SR S SS ++ +R+          +  A +SS+ F +PSK  A  + RFS +R PSE
Sbjct: 4  RFMSRSSVSSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPLPRFSFSRCPSE 63

Query: 67 LGCVQSLLPFHDAVAGARMISCLSTNSRSCRALSQD 93
          LGCVQSLLP H  VA AR+ SCLST SRS RAL+QD
Sbjct: 64 LGCVQSLLPLHSTVAAARLTSCLSTTSRSSRALTQD 99

The following BLAST results are available for this feature:

BLAST of Lsi07G012870 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G012870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1I6	2.1e-39	81.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G019950 PE=4 SV=1	[more]
A0A1S3BL94	2.2e-36	94.57	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 OS=Cu...	[more]
A0A1S3BKM3	3.7e-36	95.60	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 OS=Cu...	[more]
A0A6J1DJ71	8.5e-33	88.04	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]
A0A6J1DKL6	2.5e-32	86.96	uncharacterized protein LOC111021400 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lsi07G012870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147214.1	5.3e-37	95.65	uncharacterized protein LOC101221008 isoform X2 [Cucumis sativus]	[more]
XP_004147213.1	9.0e-37	96.70	uncharacterized protein LOC101221008 isoform X1 [Cucumis sativus]	[more]
KAE8650054.1	9.0e-37	96.70	hypothetical protein Csa_010079 [Cucumis sativus]	[more]
XP_038903088.1	2.0e-36	93.48	protein NONRESPONDING TO OXYLIPINS 2, mitochondrial isoform X3 [Benincasa hispid...	[more]
XP_008448836.1	4.5e-36	94.57	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isofo...	[more]

BLAST of Lsi07G012870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17310.2	1.0e-17	55.32	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR...	[more]
AT4G17310.1	1.7e-17	55.91	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR...	[more]
AT5G47455.4	5.5e-16	50.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G47455.5	1.2e-15	51.04	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G47455.2	1.2e-15	51.04	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..35
None	No IPR available	PANTHER	PTHR33156:SF9	OS02G0658300 PROTEIN	coord: 1..94
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G012870.1	Lsi07G012870.1	mRNA