Lsi07G012680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G012680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ribosome biogenesis protein WDR12 homolog
Location	chr07: 18500999 .. 18507358 (-)
RNA-Seq Expression	Lsi07G012680
Synteny	Lsi07G012680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAGAAAAAAATGGGTAAGAAACCCTAGCCTTTTTTCTCTCTCTCTCTTCCTTCCTCCGTACCCCAACCCCTTCCTCATATTCCTTCTTCCTTCAGTCGAACGAGACCCACACGACATCTACTCCGGCAGCGCATAGGACGTCCGGGTACCTGTGCACAACAACTTCGGCGTGACCCCGACGCGAAACCCACGAACGACGGCTCCGACCAACGTTCTCCATCGACAGTCACGAGCATCTTCCGGCCACACCTGCAGCGACCTTCATCTCCTTCAACACCGAAGCAACCTGCATTGTTGTTGCGGCCACACAACTATTGGGTATTCTCTGTTTGTAGTTTAAACTTAACTTGGTTTGAGGTGTTCGGACCGAGGTTTAAGTAAGGTTTGAGGTTTATGGACTGAGGTTTATGGCTCTGAATAAGTTTCAAACTAAGTTCTAACCTTTGGAACCGTATTTTACTATTTCTGGAGCTTTTAGATTCATTTAGAAGCGCTCTAGGACCCTAGGCAAGTAGAATTCTACCTGTTGGGTCGTGATTTAATTATATTATGTCTAATTATGACTTATTCTATTATGATTATGTGATTTAAAACTGTTTCTTGTTGGCAGCAATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTCTAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGTATGCTATCTGATCATGTCTACAATGTCTTCTGGTTATTTGGTGTTTGGGTGGAACTATTTTCTGAGCTTCATATAAACTTTATTTTTCAATAATTAAAATTATTACTTGATAGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGTAATATTTTAATTTGGGCGACTTGTATTTTTTATTTTTTATTTTTCAATGTTCAGCTCCAAAGATGTGTGGAAAGAAAATGAGAAACTTTAGAACCCTCAAAATATACAATTTGTTTAGATTTAATTTTGTTAGTTGAAGATTTTATCTGTTATTTTGGCATAAAATAGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATGGGTCTTGTCCTGGGTAAGTATTTGAATGCAACGTCTACTTTGTTATCTAGTAGTCATCTATAATTCTTATTATCACTTTCATATCTCTCTCTCTCTCACACACACACATATTTTAAAAATGCCTGCAAGTTCTAAAGATTTAGCGTTCACACCTCTTGTCACTCGTAATGACAGTGCCAATTCTTTTCCCTTTTGGTTTAGTTTATCTGAGTGTCAAAGATAAAAACGTACAATAAAGCTTTTTCTATAGCTGCGTGAAGCACAATATAGTGTAATTTATTGAATGTGCGTACTTGTTAGTATTTTTTTTCTTAGCAGTAACAACTTTATGCACATCATTAAACTGTTACTGCTGTGTCATTACAATAACTAGTTGTTGTTAAGTCTTATGGAAAGAGTAATTTTACTTATATATATACATACTTACGTATATACAATTTGAACTTGCATTCACTTGTATTTTGCAGGTTCATTTTGACAGGTTGTTATGATGGCTTAGGAAGGTAAGCTGTAGTTTTTTGTAATATATTTTTTAATACTTGAAGGAACCGATAAGTCGTTGCCTTTGTCACTATAACTTCATGAACAACCTAAAAACTTCTATTATTGTTCCCTAGGGTGTGGGAGTCTGCAGGATTGTGTACACATATTCTTGAAGGTCACAGTGATGCCATATCTTCTGTTTGTATTGTGAACCCTGAAGGTATTTACTACAATTAATAGCTTGGACATTGAACGATGGTTTGCCAGTTGTATTAGCTGATGTTATTTTTTATATCAAATTATTAATTATTTCTTGTAAGCAATGTTTTAGAAGGATAAAGGTGTTGAGGCTTTTCCTCTTGAGGAGGCGAGGCGTAAGCCTTAAGGTTCCTAGGTGATATGAGGTGTAGGCCTCAAATAGTGAATTATAAACATTTTACAGATCTTAAATTGGTGACCAAGTAATGCTAAACATGATAGTCATATAAAAGTGTAAAAAAAAAAAAGAAAATTACCCCACAATTTCACTTAATCGGTAATTTAAAATATGTCTTTATCATCACAACTACTACTATTGTCATTAATAAAATTAATTTATACAATAAATTTTGCCTTCAATGTTTTTAAAGTCAAAGCAGTAGAAGTAGACCTCGGTCAAATTGTTACAACTCACAGCTTAATATTTTTGAAGAATTAAGCAAATCACTATTATTTTTCTAATCATTGGAGGATGCACAGAGATATTAAGTCTCGGTGTATTTTCACAAAGGCGTAAGCCTCTTATGCTTCGACGAAGGTGTATGTGCTTCGAGGCATGCCTTAATAGTTTTTTAAAACATTGCTTGTAAGCACACACTCCCATTTTCTATATCAAATCATCACTATATTTATTCGTTTTCTACTTCTTCTTCCAAGTGTAGGATGATCTTTTTTATTTATTTATTTTTTAATTGATAACAATTGGTTATTGTTATTTATAATAAATAGTATTTTGATGAATCAAAATATTATATGTTAACATGAAAATTTTGAATCAGTTGTGTTTGAGAAATTTGTTGTACATGCCGAGGTGTGCTTCCATGTTCCAAGGTTAATTTTTAACCCAAGTTTTCTTCACTGAAAGTGCTAGGAAATCCTTGTGTCTGGATTTCTATTTTCTTGTGCAAGCGGGGCTCTTCTCCATATATTATCAATATCTTTTCCATTTCAGAAACTTTCAGTCATTGGGTTACCTTGTTGCTATATAAACTATATCTGATTTGCCACTAAAATACTAGTCTTCTTCTAATTTATATTTTATTATTTTACTGAAATGTGATTCTTTAATTCAAGTTTGAATTTTCACTTGATATTTTAATTTCCAATTCTTATTCCACTCTCTAGTCTCTATGATTTATTAAGTTTTTACCATGCTAATACAGAAGCAACTAATATCACTCTTGCCACTGCTTCAAAGGATCGAACACTCAGGCTGTGGAAGGTAATTTTGAAAAAGTACGGGTTTAAAGTTGTACTGATGTAATTGATAATCTAACAAAACAATCTTTCTTGTTTCCGTTTGAAGTATTCAAAAGACGATCGAGTTAGCAACCCTACCAAAATAAGGCCATTTAAAATCTTGAAAGGACATACATTGTCTGTACAAAGTGTTGCATCACAGAAATCTGGACATCTGGTATGATCTCATTCTTATGGCTCTTTTGTGTAAATCTGTTCAAGTAAAAAGTGAAAGCTACAGCTATCAACTCACAAGTTTAGCTCATATTACTTTGATCTATTTATTTTGTAATGTAGATCTGTTCAGGTTCTTGGGATTACACAATCAAGTTATGGCGAACGGATGAGCATCATTTTGAAGGCGATGTCTCCATTAAGAAGAGAAAAAAGAATGACCAGGCTGAAGAATCTCAGTTAGAGGTAAACATTGTTTTTGTTATTTTTTAGTTAATTGGATCTACATCATGTTACAAGACTCGGTATTAGTTTACCACTGGAGAATATGTTATGTGAAGCTCCAATTTCAAGTGGATTATGTTAGGTACTTAAGCACCTTGGAGAACCACACTCCAAAAGCTACCTTGGAGAACCACACCCCAAAAGCTAGCTTTTGGGGTGTGATTCTCCAAGGTGCTTAAGTACCTAACAATAGTATCAGAGCCGGTTGTTGACATTCCGGAGTGGAACCGTCGGAGGGTTCTGACTGGGTGTGGCCGAGTGAAGTACCGTTGGAGTAGCTGCTGGGACATCGGCTTTTCGGGGATGGGGTATTGTTAGGAACCAAGGTAGTATTAGGTACCTTTGTCCCATATTGGTTAGAATGGGGTGACCAATGTGGTACTTAAGTGGCTTGGCTCTCCCACCTCAATAACTAGGTTTTGGGGTATGGTGTTCTCCAAGGTGCTTAAGTACCTAACAGATTATTGAAAACGCAAATTATGGTAATGAAAACAAGCAAAAGGAATGCCTCTAGTACTAGTTAAAATTTGTGTTCGTTGAACGGTTATAGATTGAGTCACTTTATGACATGGATTCTCACTTCTCCCCTGATTTAACTGATTTGAGTTGCCATAATGGGAGTTTCATGAAAAATAACTGTGTTGTTACCAATCAATTTTTATTTTCTGCATTGTAATTTTGTTCTGTAATGGAGCTTATGACTGGAGACTCTGGATTAAATTAATGTATAAAAAATATATCTAACAGGAGGACTCTGTTGCTACACTTGTTGGCCATTCACAATCTGTATCGTCAGTTGCATGGGCAAAGCATGAAGAAATTTATTCAGTATCATGGGACCATTCTGTAAGAAGATGGGATGTCGAGACAGGCAATGTTTTGTTTAATCATGTAGGACTCTGACCTCCAAGTGTTTTTGAAGTAAATTTTAATTTTCACTTTTTGAAGTTTTCTTGTTTTAAATGCATGAGGTGGGTGTACGTAGGAAGTTATGCATTTGTCATATTCATGAATTTTTCTTTAGAAATCAACTTTTATTAAAATATGGTCTGCAAAGCTTGATCTCTTGAGGGAAAGACATTAAACAGGTGTAGAAGTAGTTAGAACATGTTTGGGAGCAATATTGAAATAGTTAAAAATTACTTTTATCATGTTCAGAATCATTTCGAAACATGTCTTTAATCATTCAAAAGTGAAATCAATATAATGTTTGATCTTACACTTTTAAATATGTTTTTCATCCGATTAAAATTGTTTTTGTATGATTAAAACTATGTTTCGGAGTGAACATGACAAAAGCGATCTAAACCATTTTAAAAAGCTTTGATAGTTTGAAACTATTAGTAGTATTGAAGGGAAGGATAGTTGACAATTGAAAACATCCCCTTTTATGTGCATGTTATTGGTTGTTAAGGTCCTTTGTAATTTATGACAATTTATCAAAGATTCCCTTTCTCTGAATGAACTATCTATCTTATGTCTTCATGTTAATTGATCTTTAGTGAAAGATGAATCCATTCACAAAAGAAAAAAAAATTGTCCCCATTGGCAGGTATGTGGTAAGGCACTCAACTGCCTCGACATTGGAGGTGAAGGTTCCTCTCTCATTGCCGCTGGTGGCTCAGACCCGATCGTTAGGATATGGGATCCTCGTAAGCCAGGTATATGAGAACGGGAAATGGGCTGCAAAGAGATTTCCCTCTTAAAACACTTCCTGTTTCTAATGCTGTGATTTTTGTATAGGAACTTCTAGTCCTATCTTTCAGTTCTCATCCCATTCTTCCTGGGTTTCGGCTTGTAAGTGGCACGATAAATCTTGGTTCCATTTGCTGTCTGCATCCTATGATGGGAAAGTTATGCTGTGGGATCTAAGAACCGCGGTACTCGAATATTATTCTCTGCTCTTTATTGTTTGTTATGAATTAAATGCATCGACCTCGCAGTAAAATTGTGTTTTTTGTTCATCTTACAGTGGCCTTTAGCTGTAATTGGCCCTTACAAAGAGAAGGTACCCCATTTAATTCCCTTCCTCAGGAATGTAGCCTTTTGCCCTGTGCAACCTTTGTTTCATTGGTGAATATTTTGCAAATTTCAGGTACTATCTGCTGATTGGTGGAAAGATGACAGTGTTGTCAGTGGTGGGGCAGACTCTAAACTCCACATTTCGTCAGGAATTTATGTTTCGTAAGGTAGAAGCTACAGCTTTGGTGGTAAAGATTTCAGTTTATCACAAAATGAATGGCCTGATTTTACTGACCATGAAAGGGCTCGTAGATGCTGCAACAATTCCAATTCTTGCCCCTTGTTGCTTCTAGTTTTTTCTTTCCAGTGTTGGGTAGAGCTGTATCAGAGGGAAATAGAAAGGGAAATAGAAAAGGTAATAGGCAGAGATAAAGTCGAGAACTAGCTAGGCTTTATTATTTATAAATCATTCTTTTTTGAGTTTGTGTTTAAACACCCAATAACTTCTGGAATCATGATACAAACCAATGGTTACTAAATAGGGCCTTAATTTTTTTTGGTATTTTCAAATTTATCTTAGATGTATGCTTAACTTAGAACATAAAAGATCTGTTTAAGTTTGTTAAAAAGTTGATTTATTATTAGATTATTATTTAATCAGCATATGTGAGGAACATTTGCCTCTTGGATGTTCTACTTA

mRNA sequence

GAAAAAGAAAAAAATGGGTAAGAAACCCTAGCCTTTTTTCTCTCTCTCTCTTCCTTCCTCCGTACCCCAACCCCTTCCTCATATTCCTTCTTCCTTCAGTCGAACGAGACCCACACGACATCTACTCCGGCAGCGCATAGGACGTCCGGGTACCTGTGCACAACAACTTCGGCGTGACCCCGACGCGAAACCCACGAACGACGGCTCCGACCAACGTTCTCCATCGACAGTCACGAGCATCTTCCGGCCACACCTGCAGCGACCTTCATCTCCTTCAACACCGAAGCAACCTGCATTGTTGTTGCGGCCACACAACTATTGGCAATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTCTAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATGGGTCTTGTCCTGGGTTCATTTTGACAGGTTGTTATGATGGCTTAGGAAGGGTGTGGGAGTCTGCAGGATTGTGTACACATATTCTTGAAGGTCACAGTGATGCCATATCTTCTGTTTGTATTGTGAACCCTGAAGAAGCAACTAATATCACTCTTGCCACTGCTTCAAAGGATCGAACACTCAGGCTGTGGAAGTATTCAAAAGACGATCGAGTTAGCAACCCTACCAAAATAAGGCCATTTAAAATCTTGAAAGGACATACATTGTCTGTACAAAGTGTTGCATCACAGAAATCTGGACATCTGATCTGTTCAGGTTCTTGGGATTACACAATCAAGTTATGGCGAACGGATGAGCATCATTTTGAAGGCGATGTCTCCATTAAGAAGAGAAAAAAGAATGACCAGGCTGAAGAATCTCAGTTAGAGGAGGACTCTGTTGCTACACTTGTTGGCCATTCACAATCTGTATCGTCAGTTGCATGGGCAAAGCATGAAGAAATTTATTCAGTATCATGGGACCATTCTGTATGTGGTAAGGCACTCAACTGCCTCGACATTGGAGGTGAAGGTTCCTCTCTCATTGCCGCTGGTGGCTCAGACCCGATCGTTAGGATATGGGATCCTCGTAAGCCAGGAACTTCTAGTCCTATCTTTCAGTTCTCATCCCATTCTTCCTGGGTTTCGGCTTGTAAGTGGCACGATAAATCTTGGTTCCATTTGCTGTCTGCATCCTATGATGGGAAAGTTATGCTGTGGGATCTAAGAACCGCGTGGCCTTTAGCTGTAATTGGCCCTTACAAAGAGAAGGTACTATCTGCTGATTGGTGGAAAGATGACAGTGTTGTCAGTGGTGGGGCAGACTCTAAACTCCACATTTCGTCAGGAATTTATGTTTCGTAAGGTAGAAGCTACAGCTTTGGTGGTAAAGATTTCAGTTTATCACAAAATGAATGGCCTGATTTTACTGACCATGAAAGGGCTCGTAGATGCTGCAACAATTCCAATTCTTGCCCCTTGTTGCTTCTAGTTTTTTCTTTCCAGTGTTGGGTAGAGCTGTATCAGAGGGAAATAGAAAGGGAAATAGAAAAGGTAATAGGCAGAGATAAAGTCGAGAACTAGCTAGGCTTTATTATTTATAAATCATTCTTTTTTGAGTTTGTGTTTAAACACCCAATAACTTCTGGAATCATGATACAAACCAATGGTTACTAAATAGGGCCTTAATTTTTTTTGGTATTTTCAAATTTATCTTAGATGTATGCTTAACTTAGAACATAAAAGATCTGTTTAAGTTTGTTAAAAAGTTGATTTATTATTAGATTATTATTTAATCAGCATATGTGAGGAACATTTGCCTCTTGGATGTTCTACTTA

Coding sequence (CDS)

ATGGATATTGATGGGGATTTTGAGGACACTTCTCGCCGAATTCAAGTGCGGTTTATCACGAAACTAAAGGCTCCTTTCAGAGTTCCAGCGAATGCCATTGCCATTCCCTCTAACCTAACCAGACTGGGTCTTTCCACCGTTGTTAACAATCTTATTTCAGCCGGGAATCCCGAGTGGGTAGAAGAACCATTTGATTTTCTAATTGATGGCGAGCTTGTCAGAATGTCACTGGAGAAATTCCTTCTTGCCAAGGGCATCTCAGCGGAAAAAACATTGGAAATTGAGTACCTTAAGGCGGTTGCCCCACGAAGGGAGGAAGAGCCTTCTGTTCATGATGATTGGGTCAGTGCAGTTGATGGGTCTTGTCCTGGGTTCATTTTGACAGGTTGTTATGATGGCTTAGGAAGGGTGTGGGAGTCTGCAGGATTGTGTACACATATTCTTGAAGGTCACAGTGATGCCATATCTTCTGTTTGTATTGTGAACCCTGAAGAAGCAACTAATATCACTCTTGCCACTGCTTCAAAGGATCGAACACTCAGGCTGTGGAAGTATTCAAAAGACGATCGAGTTAGCAACCCTACCAAAATAAGGCCATTTAAAATCTTGAAAGGACATACATTGTCTGTACAAAGTGTTGCATCACAGAAATCTGGACATCTGATCTGTTCAGGTTCTTGGGATTACACAATCAAGTTATGGCGAACGGATGAGCATCATTTTGAAGGCGATGTCTCCATTAAGAAGAGAAAAAAGAATGACCAGGCTGAAGAATCTCAGTTAGAGGAGGACTCTGTTGCTACACTTGTTGGCCATTCACAATCTGTATCGTCAGTTGCATGGGCAAAGCATGAAGAAATTTATTCAGTATCATGGGACCATTCTGTATGTGGTAAGGCACTCAACTGCCTCGACATTGGAGGTGAAGGTTCCTCTCTCATTGCCGCTGGTGGCTCAGACCCGATCGTTAGGATATGGGATCCTCGTAAGCCAGGAACTTCTAGTCCTATCTTTCAGTTCTCATCCCATTCTTCCTGGGTTTCGGCTTGTAAGTGGCACGATAAATCTTGGTTCCATTTGCTGTCTGCATCCTATGATGGGAAAGTTATGCTGTGGGATCTAAGAACCGCGTGGCCTTTAGCTGTAATTGGCCCTTACAAAGAGAAGGTACTATCTGCTGATTGGTGGAAAGATGACAGTGTTGTCAGTGGTGGGGCAGACTCTAAACTCCACATTTCGTCAGGAATTTATGTTTCGTAA

Protein sequence

MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDGSCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTLRLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHHFEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHSVCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSSWVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGGADSKLHISSGIYVS

Homology

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BLAST of Lsi07G012680 vs. ExPASy Swiss-Prot
Match: Q9LF27 (Ribosome biogenesis protein WDR12 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR12 PE=1 SV=1)

HSP 1 Score: 626.7 bits (1615), Expect = 1.9e-178
Identity = 300/435 (68.97%), Postives = 362/435 (83.22%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW 
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV PR+EEEPS+HDDWVSAV+G
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           S P FILTGCYDGLGRVW SAG C+HILEGHS AISSV +VN  +A  +T+ATASKDRTL
Sbjct: 121 SSPRFILTGCYDGLGRVWSSAGSCSHILEGHSGAISSVALVNSNDAETVTVATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RL+K+   + V + TK+R +KIL+GH  SVQSV++QKSG+++CS SWD TI LW T+E  
Sbjct: 181 RLFKFDPAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNEST 240

Query: 241 FEGD-VSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHSV--- 300
            EG+ VS+KKRK N+QAEESQ E ++V +LVGH+Q VSSV W +H+ IYS SWDHSV   
Sbjct: 241 SEGESVSVKKRKGNNQAEESQSEGEAVTSLVGHTQCVSSVVWPEHDVIYSSSWDHSVRRW 300

Query: 301 ------------CGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHS 360
                       CGKALN +D+GGE S+LIAAGGSDPI+R+WDPRKPGTS+P+FQFSSHS
Sbjct: 301 DVETGKDSLNLFCGKALNTVDVGGESSALIAAGGSDPILRVWDPRKPGTSAPVFQFSSHS 360

Query: 361 SWVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSG 420
           SW+SACKWH  SWFHLLSASYDGK+MLWDLRTAWPL+VI  + +KVLSADWWK +SVVSG
Sbjct: 361 SWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLSADWWKGESVVSG 420

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BLAST of Lsi07G012680 vs. ExPASy Swiss-Prot
Match: Q8H594 (Ribosome biogenesis protein WDR12 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=WDR12 PE=3 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 5.7e-151
Identity = 261/434 (60.14%), Postives = 328/434 (75.58%), Query Frame = 0


Query: 5   GDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPF 64
           G   D SR+++VRF+TKL AP R P  +IA+P++LTR+GLS +VN+L+ A +P+   +PF
Sbjct: 4   GGASDPSRQVRVRFLTKLPAPLRAPPTSIAVPADLTRMGLSEIVNSLLLAASPDHQAQPF 63

Query: 65  DFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDGSCPG 124
           DFL+DGELVR+ L++FLLAKGIS E+ LE+EY+KAVAPR++E+P  HDDWVSAVDGS P 
Sbjct: 64  DFLVDGELVRLPLQEFLLAKGISVERVLELEYVKAVAPRKQEDPCPHDDWVSAVDGSNPS 123

Query: 125 FILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATN-ITLATASKDRTLRLW 184
           F+LTGCYDGL R+W  A  CTHILEGHSD I+S   +N  E  + + + TASKDR+LRL+
Sbjct: 124 FVLTGCYDGLARIWRDASECTHILEGHSDGITSARFINKGETEDRLHVVTASKDRSLRLF 183

Query: 185 KYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHHFEG 244
           K+  D  VS P +I  +KIL+GHT SVQSVA   S ++ICSGSWD +IKLW  +    +G
Sbjct: 184 KF--DTSVSVPKQIGAYKILRGHTSSVQSVAVDPSTNMICSGSWDNSIKLWSVEGSEEDG 243

Query: 245 D-VSIKKRKKNDQA---EESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHS---- 304
           D VS+KKR+ N  +   EES  E  + +T +GH+Q VS+V W + + IYS SWDHS    
Sbjct: 244 DTVSVKKRRTNSDSSGPEESLFEGSATSTFLGHTQCVSAVTWPERQTIYSASWDHSVRQW 303

Query: 305 -----------VCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHS 364
                      V GKALNCLD GGE SSLIAAGGSDP++R+WDPRKPGT +PIFQFSSH 
Sbjct: 304 DVQTGKETWNMVSGKALNCLDCGGESSSLIAAGGSDPVLRVWDPRKPGTLAPIFQFSSHK 363

Query: 365 SWVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSG 419
           SW+SACKWH  SWFHL+S+S+DGKVMLWDLRTAWPLA +  +K+KVL ADWWK DSV+SG
Sbjct: 364 SWISACKWHPSSWFHLVSSSFDGKVMLWDLRTAWPLASVESHKDKVLCADWWKGDSVISG 423

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BLAST of Lsi07G012680 vs. ExPASy Swiss-Prot
Match: A8IR43 (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii OX=3055 GN=CHLREDRAFT_128420 PE=3 SV=2)

HSP 1 Score: 252.7 bits (644), Expect = 7.4e-66
Identity = 156/443 (35.21%), Postives = 230/443 (51.92%), Query Frame = 0


Query: 13  RIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGEL 72
           ++ V+F+TKL A  RVP   +A+PS+L R GLS ++N+L++   P     PFDFLIDGEL
Sbjct: 6   QVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLLALDPP----RPFDFLIDGEL 65

Query: 73  VRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDGS-C--------- 132
           VR SLE+ LLA  +SAE TLE+EY+ AV P +++  + HDDWVS+VDGS C         
Sbjct: 66  VRKSLEQHLLAHNLSAESTLEVEYVPAVVPPQQKNSTPHDDWVSSVDGSRCAPASSSGGS 125

Query: 133 -PGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTLR 192
             G +++G YDGL R+W         +  H+  ++  C+    ++    L T+ KDR ++
Sbjct: 126 PSGVVVSGSYDGLLRLWNGDLEAVASVSAHAGGVN--CVRFLPKSQGDLLLTSGKDRLVK 185

Query: 193 LWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDE--H 252
           +W+ S  +        R     +GH   V++VA+  SG    S  WD  + +W   E   
Sbjct: 186 MWQLSSSEEEDAGPSCRLVATYRGHEDGVEAVAASPSGRRFASCGWDGKLLVWEGGEQLR 245

Query: 253 HFEGDV-SIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHSV-- 312
              G   + KK++K   A  S       A L GH   VSSVAW     ++S  WDHSV  
Sbjct: 246 WAAGTAEASKKKRKTGTANGSAAAGAGGADLRGHLHCVSSVAWPAENSLFSGGWDHSVRR 305

Query: 313 -------------CGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPR-KPGTSS-PIFQFS 372
                          KA+ C+       +L+A G SD  +R+WD R K G+ +  +    
Sbjct: 306 WDVSSGAAADTYNGSKAVLCIASHAASPALVAFGCSDRALRLWDTRGKAGSDALAVTTQG 365

Query: 373 SHSSWVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADW------ 419
           +H  WV+A  W   S  H+ SAS+DG + +WD+RT  PL ++  + +KVL+  W      
Sbjct: 366 AHGGWVTAVAWCPSSQHHIASASHDGTIKMWDIRTQIPLGMLSHHTDKVLALGWLGGAEA 425

[Close]

BLAST of Lsi07G012680 vs. ExPASy Swiss-Prot
Match: Q6NX08 (Ribosome biogenesis protein wdr12 OS=Danio rerio OX=7955 GN=wdr12 PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 8.4e-62
Identity = 142/418 (33.97%), Postives = 222/418 (53.11%), Query Frame = 0


Query: 13  RIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGEL 72
           ++Q RF T+ K  + V     +IP++     LS V+N L+ A N       FDFL+ G+ 
Sbjct: 3   QLQARFFTENK-KYLVDDVPFSIPASSEVADLSGVINKLLEAKNAGHKHVEFDFLVRGQF 62

Query: 73  VRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDGSCPGFILTGCYD 132
           +R SL+K +  + IS E+ +EIEY++     + EE  +HDDW+S+V+     +ILTG YD
Sbjct: 63  LRTSLDKHIETENISTEEVVEIEYVEKFTAPQPEECIMHDDWISSVEADSE-WILTGSYD 122

Query: 133 GLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTLRLWKYSKDDRVS 192
              R+W   G     + GH+D +  V  V   +  N  L TAS D+T+ LW+++     S
Sbjct: 123 KTARIWSMEGKAVMTVAGHADVVKDVAWVK-RDGLNSVLLTASLDQTVMLWEWN-----S 182

Query: 193 NPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHHFEGDVSIKKR-K 252
              K++     +GH  SV ++A   +    CSGSWD  +K+W       E ++    R +
Sbjct: 183 ERNKVKARHCCRGHAGSVDTIAVDPTRTKFCSGSWDKMLKIWSAVPTEEEDEIEEPNRPR 242

Query: 253 KNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHSVCGKALNCLDIGGEGS 312
           K  + E+  L    + TL GH+++VSSV W   +E+ S SWDH++    L   + GG+ S
Sbjct: 243 KKQKTEQMGLTRTPLMTLSGHNEAVSSVLWMDADELCSASWDHTI---RLWDAETGGQKS 302

Query: 313 SL-----------------IAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSSWVSACKWHD 372
           +L                 +A+G +D  VR+WDPR    S  +   +SH+ WV+A +W  
Sbjct: 303 TLSGSKVFNCISYSPLCRRLASGSTDRHVRLWDPRSKDGSLVLLSLTSHNGWVTAVRWAP 362

Query: 373 KSWFHLLSASYDGKVMLWDLRTA-WPLAVIGPYKEKVLSADWWKDDSVVSGGADSKLH 412
                L+S S D  V LWD R+   PL  +  +++KVL ADW ++  ++SGGAD+KL+
Sbjct: 363 SHEHQLVSGSLDNVVKLWDTRSCKAPLYDLAAHEDKVLCADWTENGLILSGGADNKLY 409

[Close]

BLAST of Lsi07G012680 vs. ExPASy Swiss-Prot
Match: Q5BJ90 (Ribosome biogenesis protein wdr12 OS=Xenopus tropicalis OX=8364 GN=wdr12 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.9e-61
Identity = 141/417 (33.81%), Postives = 224/417 (53.72%), Query Frame = 0


Query: 13  RIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWVEEPFDFLIDGEL 72
           +IQ RF T+ +  ++V     +IP+    + LS ++N L+   N +     FDFL+  + 
Sbjct: 3   QIQARFFTE-EEKYKVDDVPFSIPATSEIVDLSNLINKLLETKNGDHKPVEFDFLVKSQF 62

Query: 73  VRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDGSCPGFILTGCYD 132
           +RM L K + A+GIS E  +EIEY++ +   + EE  +HDDWVS++ G+   +ILTG YD
Sbjct: 63  LRMPLIKHMEAEGISTEVVVEIEYVEKITAPQPEECMMHDDWVSSIAGT-EEWILTGSYD 122

Query: 133 GLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTLRLWKYSKDDRVS 192
              R+W   G     + GH++A+  V  V  +++ +  L +AS D+T++LW+++     +
Sbjct: 123 KTCRIWSLEGKTIMTITGHTEAVKDVTWVK-KDSLSCLLLSASIDQTIQLWEWN-----T 182

Query: 193 NPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRT--DEHHFEGDVSIKKR 252
              KI+     +GH  SV S+A   S    CSGSWD  +K+W     E   E + +  + 
Sbjct: 183 ERNKIKALHCCRGHAGSVDSIAVDASRTKFCSGSWDKMLKIWSAVPSEEEDEYEETSDRP 242

Query: 253 KKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHSV-------------- 312
           +K  + E+  L    + TL GHS++VSSV W+  +EI S SWDH++              
Sbjct: 243 RKKQKTEKMGLTRIPIVTLSGHSEAVSSVLWSDVDEICSASWDHNIKIWDVETGTVKSTL 302

Query: 313 -CGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSSWVSACKWHDK 372
              K  NC+      S  +A+G +D  +R+WDPR    S  +   +SH+ WV++ KW   
Sbjct: 303 AGNKVFNCISY-SPLSQRLASGSTDRHIRLWDPRSKDGSLVLCSLTSHTGWVTSVKWSPS 362

Query: 373 SWFHLLSASYDGKVMLWDLRTA-WPLAVIGPYKEKVLSADWWKDDSVVSGGADSKLH 412
               L+S S D  V LWD R+   PL  +  + +KVLS DW     ++SGG+D+KL+
Sbjct: 363 HEQQLVSGSLDKLVKLWDTRSCKAPLYDLAAHSDKVLSVDWTDAGLILSGGSDNKLY 410

[Close]

BLAST of Lsi07G012680 vs. ExPASy TrEMBL
Match: A0A1S3B4A1 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo OX=3656 GN=LOC103486017 PE=3 SV=1)

HSP 1 Score: 802.7 bits (2072), Expect = 7.1e-229
Identity = 394/434 (90.78%), Postives = 406/434 (93.55%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNP EATN+TLATASKDRTL
Sbjct: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKDDRV NPTK+RPFKILKGH LSVQSVASQKSGHLICSGSWD+TIKLWRTDEH 
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 FEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHS----- 300
            EGDVSIKKRK N++AEESQLEEDSVATL GHSQSVSSVAW KHEEIYSVSWDHS     
Sbjct: 241 SEGDVSIKKRKMNNKAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRKWD 300

Query: 301 ----------VCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSS 360
                     VCGKALNCLDIGGEGSSLIAAGGSDP +RIWDPRKPGTSSPIFQFSSH+S
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGG 420
           WVSACKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVI  +K+KVLSADWWKDDSVVSGG
Sbjct: 361 WVSACKWHEKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLSADWWKDDSVVSGG 420

[Close]

BLAST of Lsi07G012680 vs. ExPASy TrEMBL
Match: A0A5D3C4N3 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00050 PE=3 SV=1)

HSP 1 Score: 802.7 bits (2072), Expect = 7.1e-229
Identity = 394/434 (90.78%), Postives = 406/434 (93.55%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNP EATN+TLATASKDRTL
Sbjct: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKDDRV NPTK+RPFKILKGH LSVQSVASQKSGHLICSGSWD+TIKLWRTDEH 
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 FEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHS----- 300
            EGDVSIKKRK N++AEESQLEEDSVATL GHSQSVSSVAW KHEEIYSVSWDHS     
Sbjct: 241 SEGDVSIKKRKMNNKAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRKWD 300

Query: 301 ----------VCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSS 360
                     VCGKALNCLDIGGEGSSLIAAGGSDP +RIWDPRKPGTSSPIFQFSSH+S
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGG 420
           WVSACKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVI  +K+KVLSADWWKDDSVVSGG
Sbjct: 361 WVSACKWHEKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLSADWWKDDSVVSGG 420

[Close]

BLAST of Lsi07G012680 vs. ExPASy TrEMBL
Match: A0A5A7TIJ1 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001930 PE=3 SV=1)

HSP 1 Score: 802.7 bits (2072), Expect = 7.1e-229
Identity = 394/434 (90.78%), Postives = 406/434 (93.55%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNP EATN+TLATASKDRTL
Sbjct: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKDDRV NPTK+RPFKILKGH LSVQSVASQKSGHLICSGSWD+TIKLWRTDEH 
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 FEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHS----- 300
            EGDVSIKKRK N++AEESQLEEDSVATL GHSQSVSSVAW KHEEIYSVSWDHS     
Sbjct: 241 SEGDVSIKKRKMNNKAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRKWD 300

Query: 301 ----------VCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSS 360
                     VCGKALNCLDIGGEGSSLIAAGGSDP +RIWDPRKPGTSSPIFQFSSH+S
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGG 420
           WVSACKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVI  +K+KVLSADWWKDDSVVSGG
Sbjct: 361 WVSACKWHEKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLSADWWKDDSVVSGG 420

[Close]

BLAST of Lsi07G012680 vs. ExPASy TrEMBL
Match: A0A0A0KYI3 (Ribosome biogenesis protein WDR12 homolog OS=Cucumis sativus OX=3659 GN=Csa_4G187290 PE=3 SV=1)

HSP 1 Score: 792.7 bits (2046), Expect = 7.3e-226
Identity = 388/433 (89.61%), Postives = 400/433 (92.38%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRR+QVRFITKL APF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDG GRVWESAGLCTHILEGHSDAISSVCIVNP EATN+TLATASKDRT+
Sbjct: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKDDRV NPTK+RPFKILKGH LSVQSVASQKSGHLICSGSWD+TIKLWRTDEH 
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 FEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHS----- 300
            EGDVSIKKRKKN QAEESQLEEDSVATL GHSQSVSSVAW KHEEIYSVSWDHS     
Sbjct: 241 SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWD 300

Query: 301 ----------VCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSS 360
                     VCGKALNCLDIGGEGSSLIAAGGSDP +RIWDPRKPGTSSPIFQFSSH+S
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGG 419
           WVS CKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVI  + +KVLSADWWKDDS+VSGG
Sbjct: 361 WVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGG 420

[Close]

BLAST of Lsi07G012680 vs. ExPASy TrEMBL
Match: A0A6J1DM12 (Ribosome biogenesis protein WDR12 homolog OS=Momordica charantia OX=3673 GN=LOC111022210 PE=3 SV=1)

HSP 1 Score: 735.3 bits (1897), Expect = 1.4e-208
Identity = 364/434 (83.87%), Postives = 384/434 (88.48%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  EDTSRR+QVRFITKLKAPF+VP NAIAIPSNLTRLGLSTVVNNLI AGNPEW 
Sbjct: 1   MDIDGVSEDTSRRVQVRFITKLKAPFKVPTNAIAIPSNLTRLGLSTVVNNLILAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGELVRMSLE+FLLAKGISAEKTLEIEY+KAVAPR+EEEPSVHDDWVSAVDG
Sbjct: 61  AEPFDFLIDGELVRMSLEQFLLAKGISAEKTLEIEYIKAVAPRKEEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEA ++TLATASKDRTL
Sbjct: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEAASVTLATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKD   SNPTKIR FKILKGH LSVQSVASQ SG LICSGSWD TI LW+TDE  
Sbjct: 181 RLWKYSKDKSASNPTKIRAFKILKGHGLSVQSVASQTSGDLICSGSWDCTINLWQTDEPQ 240

Query: 241 FEGD-VSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHSV--- 300
            EGD VSIK+RKKNDQAEESQLE  SVATLVGH+Q VSSVAW KH EIYS SWDHSV   
Sbjct: 241 SEGDVVSIKRRKKNDQAEESQLEGTSVATLVGHTQCVSSVAWPKHGEIYSASWDHSVRRW 300

Query: 301 ------------CGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHS 360
                       CGKAL+CLDIGGEGS+LIAAGGSDP +RIWDPRKPGTS P+FQF SHS
Sbjct: 301 DVETGKDLFNIFCGKALSCLDIGGEGSTLIAAGGSDPTIRIWDPRKPGTSGPVFQFLSHS 360

Query: 361 SWVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSG 419
           SWVSACKWHD+SWFHLLSASYDGK MLWDLRTAWPLAVI  +K+KVLSADWWK D+V+SG
Sbjct: 361 SWVSACKWHDRSWFHLLSASYDGKAMLWDLRTAWPLAVIDSHKDKVLSADWWKGDNVISG 420

[Close]

BLAST of Lsi07G012680 vs. NCBI nr
Match: XP_008442030.1 (PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo] >XP_008442032.1 PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo])

HSP 1 Score: 802.7 bits (2072), Expect = 1.5e-228
Identity = 394/434 (90.78%), Postives = 406/434 (93.55%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNP EATN+TLATASKDRTL
Sbjct: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKDDRV NPTK+RPFKILKGH LSVQSVASQKSGHLICSGSWD+TIKLWRTDEH 
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 FEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHS----- 300
            EGDVSIKKRK N++AEESQLEEDSVATL GHSQSVSSVAW KHEEIYSVSWDHS     
Sbjct: 241 SEGDVSIKKRKMNNKAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRKWD 300

Query: 301 ----------VCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSS 360
                     VCGKALNCLDIGGEGSSLIAAGGSDP +RIWDPRKPGTSSPIFQFSSH+S
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGG 420
           WVSACKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVI  +K+KVLSADWWKDDSVVSGG
Sbjct: 361 WVSACKWHEKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLSADWWKDDSVVSGG 420

[Close]

BLAST of Lsi07G012680 vs. NCBI nr
Match: TYK05339.1 (ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 802.7 bits (2072), Expect = 1.5e-228
Identity = 394/434 (90.78%), Postives = 406/434 (93.55%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNP EATN+TLATASKDRTL
Sbjct: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKDDRV NPTK+RPFKILKGH LSVQSVASQKSGHLICSGSWD+TIKLWRTDEH 
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 FEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHS----- 300
            EGDVSIKKRK N++AEESQLEEDSVATL GHSQSVSSVAW KHEEIYSVSWDHS     
Sbjct: 241 SEGDVSIKKRKMNNKAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRKWD 300

Query: 301 ----------VCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSS 360
                     VCGKALNCLDIGGEGSSLIAAGGSDP +RIWDPRKPGTSSPIFQFSSH+S
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGG 420
           WVSACKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVI  +K+KVLSADWWKDDSVVSGG
Sbjct: 361 WVSACKWHEKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLSADWWKDDSVVSGG 420

[Close]

BLAST of Lsi07G012680 vs. NCBI nr
Match: KAA0041816.1 (ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 802.7 bits (2072), Expect = 1.5e-228
Identity = 394/434 (90.78%), Postives = 406/434 (93.55%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRRIQVRFITKLKAPF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRIQVRFITKLKAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNP EATN+TLATASKDRTL
Sbjct: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKDDRV NPTK+RPFKILKGH LSVQSVASQKSGHLICSGSWD+TIKLWRTDEH 
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 FEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHS----- 300
            EGDVSIKKRK N++AEESQLEEDSVATL GHSQSVSSVAW KHEEIYSVSWDHS     
Sbjct: 241 SEGDVSIKKRKMNNKAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRKWD 300

Query: 301 ----------VCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSS 360
                     VCGKALNCLDIGGEGSSLIAAGGSDP +RIWDPRKPGTSSPIFQFSSH+S
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGG 420
           WVSACKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVI  +K+KVLSADWWKDDSVVSGG
Sbjct: 361 WVSACKWHEKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKDKVLSADWWKDDSVVSGG 420

[Close]

BLAST of Lsi07G012680 vs. NCBI nr
Match: XP_004149101.1 (ribosome biogenesis protein WDR12 homolog [Cucumis sativus] >KGN53899.1 hypothetical protein Csa_019131 [Cucumis sativus])

HSP 1 Score: 792.7 bits (2046), Expect = 1.5e-225
Identity = 388/433 (89.61%), Postives = 400/433 (92.38%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDGDFEDTSRR+QVRFITKL APF+VPANAIAIPSNLTRLGLSTVVNNL+SAGNPEW 
Sbjct: 1   MDIDGDFEDTSRRVQVRFITKLIAPFKVPANAIAIPSNLTRLGLSTVVNNLLSAGNPEWE 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEY KAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYFKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDG GRVWESAGLCTHILEGHSDAISSVCIVNP EATN+TLATASKDRT+
Sbjct: 121 SCPGFILTGCYDGFGRVWESAGLCTHILEGHSDAISSVCIVNPGEATNVTLATASKDRTI 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKDDRV NPTK+RPFKILKGH LSVQSVASQKSGHLICSGSWD+TIKLWRTDEH 
Sbjct: 181 RLWKYSKDDRVKNPTKLRPFKILKGHRLSVQSVASQKSGHLICSGSWDHTIKLWRTDEHQ 240

Query: 241 FEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHS----- 300
            EGDVSIKKRKKN QAEESQLEEDSVATL GHSQSVSSVAW KHEEIYSVSWDHS     
Sbjct: 241 SEGDVSIKKRKKNTQAEESQLEEDSVATLDGHSQSVSSVAWPKHEEIYSVSWDHSVRRWD 300

Query: 301 ----------VCGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSS 360
                     VCGKALNCLDIGGEGSSLIAAGGSDP +RIWDPRKPGTSSPIFQFSSH+S
Sbjct: 301 VETGNVLFNHVCGKALNCLDIGGEGSSLIAAGGSDPTIRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGG 419
           WVS CKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVI  + +KVLSADWWKDDS+VSGG
Sbjct: 361 WVSDCKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHNDKVLSADWWKDDSIVSGG 420

[Close]

BLAST of Lsi07G012680 vs. NCBI nr
Match: XP_038875775.1 (ribosome biogenesis protein WDR12 homolog [Benincasa hispida] >XP_038875785.1 ribosome biogenesis protein WDR12 homolog [Benincasa hispida])

HSP 1 Score: 790.4 bits (2040), Expect = 7.5e-225
Identity = 390/434 (89.86%), Postives = 401/434 (92.40%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MD DG F+DTSRRIQVRFITKLKAPF+VPANAIAIPS+LTRLGLST+VNNL+SAGNPEW 
Sbjct: 1   MDTDGVFDDTSRRIQVRFITKLKAPFKVPANAIAIPSSLTRLGLSTIVNNLLSAGNPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
           EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG
Sbjct: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           SCPGFILTGCYDGLGRVWE AGLCTHILEGHSDAISSVC VNPEEATN+TLATASKDRTL
Sbjct: 121 SCPGFILTGCYDGLGRVWEPAGLCTHILEGHSDAISSVCTVNPEEATNVTLATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RLWKYSKDDRVS PTKIRPFKILKGH LSVQSVASQKSG LICSGSWD TIKLWRTDEHH
Sbjct: 181 RLWKYSKDDRVSIPTKIRPFKILKGHRLSVQSVASQKSGDLICSGSWDCTIKLWRTDEHH 240

Query: 241 FEGDVSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHSV---- 300
            EGDVSIKKRKKNDQAEESQLEEDSVATL GHSQ VSSVAW KHEEIYSVSWDHSV    
Sbjct: 241 SEGDVSIKKRKKNDQAEESQLEEDSVATLAGHSQCVSSVAWPKHEEIYSVSWDHSVRKWD 300

Query: 301 -----------CGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSS 360
                      CGKALNCLDIGGEGS+LIAAGGSDP VRIWDPRKPGTSSPIFQFSSH+S
Sbjct: 301 VETGNVLFNHLCGKALNCLDIGGEGSALIAAGGSDPTVRIWDPRKPGTSSPIFQFSSHTS 360

Query: 361 WVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSGG 420
           WVSACKWH+KSWFHLLSASYDGKVMLWDLRTAWPLAVI  +KEKVLSADWWKDDSV+SGG
Sbjct: 361 WVSACKWHNKSWFHLLSASYDGKVMLWDLRTAWPLAVIDSHKEKVLSADWWKDDSVISGG 420

[Close]

BLAST of Lsi07G012680 vs. TAIR 10
Match: AT5G15550.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 626.7 bits (1615), Expect = 1.3e-179
Identity = 300/435 (68.97%), Postives = 362/435 (83.22%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW 
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV PR+EEEPS+HDDWVSAV+G
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           S P FILTGCYDGLGRVW SAG C+HILEGHS AISSV +VN  +A  +T+ATASKDRTL
Sbjct: 121 SSPRFILTGCYDGLGRVWSSAGSCSHILEGHSGAISSVALVNSNDAETVTVATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RL+K+   + V + TK+R +KIL+GH  SVQSV++QKSG+++CS SWD TI LW T+E  
Sbjct: 181 RLFKFDPAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNEST 240

Query: 241 FEGD-VSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHSV--- 300
            EG+ VS+KKRK N+QAEESQ E ++V +LVGH+Q VSSV W +H+ IYS SWDHSV   
Sbjct: 241 SEGESVSVKKRKGNNQAEESQSEGEAVTSLVGHTQCVSSVVWPEHDVIYSSSWDHSVRRW 300

Query: 301 ------------CGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHS 360
                       CGKALN +D+GGE S+LIAAGGSDPI+R+WDPRKPGTS+P+FQFSSHS
Sbjct: 301 DVETGKDSLNLFCGKALNTVDVGGESSALIAAGGSDPILRVWDPRKPGTSAPVFQFSSHS 360

Query: 361 SWVSACKWHDKSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLSADWWKDDSVVSG 420
           SW+SACKWH  SWFHLLSASYDGK+MLWDLRTAWPL+VI  + +KVLSADWWK +SVVSG
Sbjct: 361 SWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLSADWWKGESVVSG 420

[Close]

BLAST of Lsi07G012680 vs. TAIR 10
Match: AT5G15550.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 564.3 bits (1453), Expect = 8.1e-161
Identity = 270/393 (68.70%), Postives = 327/393 (83.21%), Query Frame = 0


Query: 1   MDIDGDFEDTSRRIQVRFITKLKAPFRVPANAIAIPSNLTRLGLSTVVNNLISAGNPEWV 60
           MDIDG  ED SRR+ V+F+TKL +PF+VP N++AIPSN+TRLGLS++VN++I + NPEW 
Sbjct: 1   MDIDG--EDVSRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEWK 60

Query: 61  EEPFDFLIDGELVRMSLEKFLLAKGISAEKTLEIEYLKAVAPRREEEPSVHDDWVSAVDG 120
            EPFDFLIDGEL+RMSLE+FLLAKGISAE+TLEIEY++AV PR+EEEPS+HDDWVSAV+G
Sbjct: 61  TEPFDFLIDGELIRMSLEEFLLAKGISAERTLEIEYIRAVTPRKEEEPSLHDDWVSAVNG 120

Query: 121 SCPGFILTGCYDGLGRVWESAGLCTHILEGHSDAISSVCIVNPEEATNITLATASKDRTL 180
           S P FILTGCYDGLGRVW SAG C+HILEGHS AISSV +VN  +A  +T+ATASKDRTL
Sbjct: 121 SSPRFILTGCYDGLGRVWSSAGSCSHILEGHSGAISSVALVNSNDAETVTVATASKDRTL 180

Query: 181 RLWKYSKDDRVSNPTKIRPFKILKGHTLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHH 240
           RL+K+   + V + TK+R +KIL+GH  SVQSV++QKSG+++CS SWD TI LW T+E  
Sbjct: 181 RLFKFDPAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWNTNEST 240

Query: 241 FEGD-VSIKKRKKNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWDHSV--- 300
            EG+ VS+KKRK N+QAEESQ E ++V +LVGH+Q VSSV W +H+ IYS SWDHSV   
Sbjct: 241 SEGESVSVKKRKGNNQAEESQSEGEAVTSLVGHTQCVSSVVWPEHDVIYSSSWDHSVRRW 300

Query: 301 ------------CGKALNCLDIGGEGSSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHS 360
                       CGKALN +D+GGE S+LIAAGGSDPI+R+WDPRKPGTS+P+FQFSSHS
Sbjct: 301 DVETGKDSLNLFCGKALNTVDVGGESSALIAAGGSDPILRVWDPRKPGTSAPVFQFSSHS 360

Query: 361 SWVSACKWHDKSWFHLLSASYDGKVMLWDLRTA 378
           SW+SACKWH  SWFHLLSASYDGK+MLWDLRTA
Sbjct: 361 SWISACKWHKSSWFHLLSASYDGKIMLWDLRTA 391

[Close]

BLAST of Lsi07G012680 vs. TAIR 10
Match: AT5G16750.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 66.2 bits (160), Expect = 7.0e-11
Identity = 74/299 (24.75%), Postives = 131/299 (43.81%), Query Frame = 0


Query: 136 RVWESAGL-CTHILEGHSDAISSV--CIVNPEEATNITLATASKDRTLRLWKYSKDDRVS 195
           RV++ A + C+++L GH + + S+  C+     + N+ + T SKD+T+RLW         
Sbjct: 384 RVYDVATMSCSYVLAGHKEVVLSLDTCV---SSSGNVLIVTGSKDKTVRLW--------- 443

Query: 196 NPTKIRPFKILKGHTLSVQSVA-SQKSGHLICSGSWDYTIKLWRTDEHHFEGDVSIKKRK 255
           N T      +  GH   + +VA ++KS     SGS D T+K+W  D              
Sbjct: 444 NATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLD------------GI 503

Query: 256 KNDQAEESQLEEDSVATLVGHSQSVSSVAWAKHEEIYSVSWD-------------HSVCG 315
             D  E   L+  SV  +  H + ++SVA A+++ +     +             H V  
Sbjct: 504 SEDSEEPINLKTRSV--VAAHDKDINSVAVARNDSLVCTGSEDRTASIWRLPDLVHVVTL 563

Query: 316 KALNCLDIGGEGSSL---IAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSSWVSACKW-HD 375
           K         E S++   +     D  V+IW        S +  F  H+S V    +  D
Sbjct: 564 KGHKRRIFSVEFSTVDQCVMTASGDKTVKIW---AISDGSCLKTFEGHTSSVLRASFITD 623

Query: 376 KSWFHLLSASYDGKVMLWDLRTAWPLAVIGPYKEKVLS-ADWWKDDSVVSGGADSKLHI 413
            + F  +S   DG + LW++ T+  +A    +++KV + A   K + + +GG D+ +++
Sbjct: 624 GTQF--VSCGADGLLKLWNVNTSECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINL 651

[Close]

BLAST of Lsi07G012680 vs. TAIR 10
Match: AT1G18080.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-10
Identity = 62/248 (25.00%), Postives = 103/248 (41.53%), Query Frame = 0


Query: 148 LEGHSDAISSVCIVNPEEATNITLATASKDRTLRLWKYSKDDRVSNPTKIRPFKILKGHT 207
           +  H+D +++  I  P +  +I + +AS+D+++ LWK +KDD+     + R    L GH+
Sbjct: 11  MRAHTDMVTA--IATPIDNADI-IVSASRDKSIILWKLTKDDKAYGVAQRR----LTGHS 70

Query: 208 LSVQSVASQKSGHLICSGSWDYTIKLWRTDEHHFEGDVSIKKRKKNDQAEESQLEEDSVA 267
             V+ V     G    SGSWD  ++LW          VS ++                  
Sbjct: 71  HFVEDVVLSSDGQFALSGSWDGELRLW-----DLAAGVSTRR------------------ 130

Query: 268 TLVGHSQSVSSVAWA-KHEEIYSVSWDHSV-----CGKALNCLDIGGEG----------- 327
             VGH++ V SVA++  + +I S S D ++      G+    +  GGEG           
Sbjct: 131 -FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 190

Query: 328 ----SSLIAAGGSDPIVRIWDPRKPGTSSPIFQFSSHSSWVSACKWHDKSWFHLLSASYD 375
                  I +   D  V++W+       S +   + H+ +VS             S   D
Sbjct: 191 PNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---AGHTGYVSTVAVSPDGSL-CASGGKD 223

[Close]

BLAST of Lsi07G012680 vs. TAIR 10
Match: AT3G18130.1 (receptor for activated C kinase 1C )

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-09
Identity = 59/231 (25.54%), Postives = 99/231 (42.86%), Query Frame = 0


Query: 147 ILEGHSDAISSVCIVNPEEATNITLATASKDRTLRLWKYSKDDRVSNPTKIRPFKILKGH 206
           I+  H+D +++  I  P + ++I + TAS+D+++ LWK +KDD+     + R    L GH
Sbjct: 10  IMRAHTDIVTA--IATPIDNSDI-IVTASRDKSIILWKLTKDDKSYGVAQRR----LTGH 69

Query: 207 TLSVQSVASQKSGHLICSGSWDYTIKLWRTDEHHFEGDVSIKKRKKNDQAEESQLEEDSV 266
           +  V+ V     G    SGSWD  ++LW                             ++ 
Sbjct: 70  SHFVEDVVLSSDGQFALSGSWDGELRLW------------------------DLATGETT 129

Query: 267 ATLVGHSQSVSSVAWA-KHEEIYSVSWDHSVCGKALNCLDIGGEGSSLIAAGGSDPIVRI 326
              VGH++ V SVA++  + +I S S D ++  K  N L   GE    I+ G        
Sbjct: 130 RRFVGHTKDVLSVAFSTDNRQIVSASRDRTI--KLWNTL---GECKYTISEG-------- 181

Query: 327 WDPRKPGTSSPIFQFSSHSSWVSACKWHDKSWF-HLLSASYDGKVMLWDLR 376
                            H  WVS  ++   +    ++SAS+D  V +W+L+
Sbjct: 190 ---------------DGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQ 181

The following BLAST results are available for this feature:

BLAST of Lsi07G012680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF27	1.9e-178	68.97	Ribosome biogenesis protein WDR12 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR...	[more]
Q8H594	5.7e-151	60.14	Ribosome biogenesis protein WDR12 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
A8IR43	7.4e-66	35.21	Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii OX=3055 G...	[more]
Q6NX08	8.4e-62	33.97	Ribosome biogenesis protein wdr12 OS=Danio rerio OX=7955 GN=wdr12 PE=2 SV=1	[more]
Q5BJ90	1.9e-61	33.81	Ribosome biogenesis protein wdr12 OS=Xenopus tropicalis OX=8364 GN=wdr12 PE=2 SV...	[more]

BLAST of Lsi07G012680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4A1	7.1e-229	90.78	Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo OX=3656 GN=LOC10348601...	[more]
A0A5D3C4N3	7.1e-229	90.78	Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7TIJ1	7.1e-229	90.78	Ribosome biogenesis protein WDR12 homolog OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KYI3	7.3e-226	89.61	Ribosome biogenesis protein WDR12 homolog OS=Cucumis sativus OX=3659 GN=Csa_4G18...	[more]
A0A6J1DM12	1.4e-208	83.87	Ribosome biogenesis protein WDR12 homolog OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of Lsi07G012680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442030.1	1.5e-228	90.78	PREDICTED: ribosome biogenesis protein WDR12 homolog [Cucumis melo] >XP_00844203...	[more]
TYK05339.1	1.5e-228	90.78	ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa]	[more]
KAA0041816.1	1.5e-228	90.78	ribosome biogenesis protein WDR12-like protein [Cucumis melo var. makuwa]	[more]
XP_004149101.1	1.5e-225	89.61	ribosome biogenesis protein WDR12 homolog [Cucumis sativus] >KGN53899.1 hypothet...	[more]
XP_038875775.1	7.5e-225	89.86	ribosome biogenesis protein WDR12 homolog [Benincasa hispida] >XP_038875785.1 ri...	[more]

BLAST of Lsi07G012680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15550.1	1.3e-179	68.97	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G15550.2	8.1e-161	68.70	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G16750.1	7.0e-11	24.75	Transducin family protein / WD-40 repeat family protein	[more]
AT1G18080.1	4.5e-10	25.00	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G18130.1	1.0e-09	25.54	receptor for activated C kinase 1C	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 222..236 score: 38.5 coord: 360..374 score: 38.61 coord: 171..185 score: 36.58
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 376..414 e-value: 10.0 score: 10.6 coord: 333..373 e-value: 5.1E-7 score: 39.3 coord: 141..184 e-value: 0.0014 score: 27.9 coord: 262..327 e-value: 0.098 score: 21.8 coord: 101..139 e-value: 2.2 score: 14.9 coord: 196..235 e-value: 2.9E-6 score: 36.8
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 336..373 e-value: 0.016 score: 16.0 coord: 144..184 e-value: 2.1E-5 score: 25.2 coord: 199..234 e-value: 1.7E-6 score: 28.6 coord: 266..327 e-value: 0.059 score: 14.3
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 148..193 score: 10.441614
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 203..234 score: 11.811761
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 340..382 score: 10.809215
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 105..419 e-value: 4.5E-58 score: 198.7
IPR012972	NLE	PFAM	PF08154	NLE	coord: 14..81 e-value: 3.2E-18 score: 66.0
None	No IPR available	PANTHER	PTHR19855:SF11	RIBOSOME BIOGENESIS PROTEIN WDR12	coord: 9..415
None	No IPR available	PANTHER	PTHR19855	WD40 REPEAT PROTEIN 12, 37	coord: 9..415
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 340..376 score: 9.045603
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 203..234 score: 9.862871
None	No IPR available	CDD	cd00200	WD40	coord: 111..412 e-value: 1.20277E-39 score: 141.704
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 360..374
IPR028599	WD repeat WDR12/Ytm1	HAMAP	MF_03029	WDR12	coord: 8..417 score: 27.609556
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 109..412

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G012680.1	Lsi07G012680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043021	ribonucleoprotein complex binding