Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTCTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCGTCAACCCCATCGCCGGTTGCAGCTCCCCCGACTACACCGCCCCCTGAAGCGTCACCGCCGACAAGCATCTCAACTCCACCGGCGGCGGCTCCTCCCACCATCCCACCGACGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCGCCGCCTCCGGCGCCAGCTCCGTCGCCGCCGTCGCCTCCGCCGCCGAGCGCGGGATTTTCCATCCACCAGGGCGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGGCTGGCCGTCGTCCTGGTTTAA
mRNA sequence
ATGGCTTCCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTCTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCGTCAACCCCATCGCCGGTTGCAGCTCCCCCGACTACACCGCCCCCTGAAGCGTCACCGCCGACAAGCATCTCAACTCCACCGGCGGCGGCTCCTCCCACCATCCCACCGACGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCGCCGCCTCCGGCGCCAGCTCCGTCGCCGCCGTCGCCTCCGCCGCCGAGCGCGGGATTTTCCATCCACCAGGGCGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGGCTGGCCGTCGTCCTGGTTTAA
Coding sequence (CDS)
ATGGCTTCCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTCTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCGTCAACCCCATCGCCGGTTGCAGCTCCCCCGACTACACCGCCCCCTGAAGCGTCACCGCCGACAAGCATCTCAACTCCACCGGCGGCGGCTCCTCCCACCATCCCACCGACGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCGCCGCCTCCGGCGCCAGCTCCGTCGCCGCCGTCGCCTCCGCCGCCGAGCGCGGGATTTTCCATCCACCAGGGCGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGGCTGGCCGTCGTCCTGGTTTAA
Protein sequence
MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV
Homology
BLAST of Lsi07G012610 vs. ExPASy TrEMBL
Match:
A0A0A0L458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 2.3e-36
Identity = 126/157 (80.25%), Postives = 132/157 (84.08%), Query Frame = 0
Query: 1 MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPP 60
MASARAMLVL LSLL+LSSSSIAQSPSP+PGPAS AAPPPSTP PVA PPTTPPP ASPP
Sbjct: 1 MASARAMLVLLLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPP 60
Query: 61 TSISTPPAAAPPTIPPTIASPPPMESS--PAPGP-MPDSPPSPPGPSSSPMSP--PPPAP 120
+SISTPPAAAP PP +ASPPPME S PAPGP MP+ PPSP PS SPMSP P PAP
Sbjct: 61 SSISTPPAAAPTATPPMMASPPPMEPSTAPAPGPAMPEGPPSP--PSQSPMSPPGPAPAP 120
Query: 121 APSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV 153
AP+PPS P SAGFSIHQGGY A VAAVLGGLAVVLV
Sbjct: 121 APTPPSARPRSAGFSIHQGGYMAGVAAVLGGLAVVLV 155
BLAST of Lsi07G012610 vs. ExPASy TrEMBL
Match:
A0A6J1E5X6 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111431090 PE=4 SV=1)
HSP 1 Score: 153.3 bits (386), Expect = 8.2e-34
Identity = 120/161 (74.53%), Postives = 130/161 (80.75%), Query Frame = 0
Query: 1 MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP----- 60
MA+ARAMLVLALSLL+L++S+IAQSPSPAPGPA AAPPP TP PVAAPPTTPPP
Sbjct: 1 MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60
Query: 61 -EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--MPDSPPSPPGPSSSPMSPPP 120
ASPP S+STPP AAPPT+PP +ASPP MES P+PGP MPDSPPSPPGPS P P
Sbjct: 61 MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120
Query: 121 PAPAPSPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV 153
PA APSPP PPP AGFSI GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160
BLAST of Lsi07G012610 vs. ExPASy TrEMBL
Match:
W5PQH5 (NDT80 domain-containing protein OS=Ovis aries OX=9940 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 60/104 (57.69%), Postives = 67/104 (64.42%), Query Frame = 0
Query: 25 SPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPM 84
SPSPAP P S PPS PSP + PP++PPP PP S PP+ P+ PP+ SPPP
Sbjct: 361 SPSPAPSPPS----PPSPPSPPSPPPSSPPPSPPPPPPPSPPPSPPSPSPPPSPPSPPPS 420
Query: 85 --ESSPAPGPMPDSPPS-PPGPSSSPMSPPPPAPAPSPPSPPPP 126
SSP+P P P SPPS PP P SP SPPPP P SPPSPPPP
Sbjct: 421 PPPSSPSPAPSPPSPPSPPPSPPPSPPSPPPPPPPSSPPSPPPP 460
BLAST of Lsi07G012610 vs. ExPASy TrEMBL
Match:
A0A419Q988 (Cell surface glycoprotein 1 (Fragment) OS=Clonorchis sinensis OX=79923 GN=olpB PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 3.0e-04
Identity = 59/109 (54.13%), Postives = 70/109 (64.22%), Query Frame = 0
Query: 19 SSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPA--AAPPTIPP 78
S S SP P+P P+ +PPP +P P +PP +PPP SPP+ S PP+ +PP PP
Sbjct: 451 SPSPPPSPPPSPSPSPPPSPPPPSPPPSPSPPPSPPPPPSPPSPPSPPPSPPPSPPPSPP 510
Query: 79 TIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPP 126
SP P S P+P P SPPSPP PS SP SPPPP P+PSPPSPPPP
Sbjct: 511 PSPSPSPPPSPPSPPPPSPSPPSPPPPSPSPPSPPPP-PSPSPPSPPPP 558
BLAST of Lsi07G012610 vs. NCBI nr
Match:
XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])
HSP 1 Score: 198.4 bits (503), Expect = 4.6e-47
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0
Query: 1 MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPP 60
MASARAMLVLALSLLAL SSSIAQSPSPAPGPASAAAPPPS+P PVAAPPTTPPP ASPP
Sbjct: 1 MASARAMLVLALSLLALFSSSIAQSPSPAPGPASAAAPPPSSPPPVAAPPTTPPPAASPP 60
Query: 61 TSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSP--MSPPPPAPAPS 120
+ISTPPAAAPP IPP +ASPP MESSP PGPMPDSPPSPPGPS SP MSPP PAPAPS
Sbjct: 61 PTISTPPAAAPPAIPPMMASPPSMESSPGPGPMPDSPPSPPGPSPSPMSMSPPTPAPAPS 120
Query: 121 PPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV 153
PPSPPPPSAGFSIHQGGYKAA AAVLGGLAV LV
Sbjct: 121 PPSPPPPSAGFSIHQGGYKAAAAAVLGGLAVFLV 154
BLAST of Lsi07G012610 vs. NCBI nr
Match:
XP_022923372.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])
HSP 1 Score: 153.3 bits (386), Expect = 1.7e-33
Identity = 120/161 (74.53%), Postives = 130/161 (80.75%), Query Frame = 0
Query: 1 MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP----- 60
MA+ARAMLVLALSLL+L++S+IAQSPSPAPGPA AAPPP TP PVAAPPTTPPP
Sbjct: 1 MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60
Query: 61 -EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--MPDSPPSPPGPSSSPMSPPP 120
ASPP S+STPP AAPPT+PP +ASPP MES P+PGP MPDSPPSPPGPS P P
Sbjct: 61 MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120
Query: 121 PAPAPSPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV 153
PA APSPP PPP AGFSI GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160
BLAST of Lsi07G012610 vs. NCBI nr
Match:
XP_023553563.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 152.1 bits (383), Expect = 3.8e-33
Identity = 122/162 (75.31%), Postives = 132/162 (81.48%), Query Frame = 0
Query: 1 MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP----- 60
MA+ARAMLVLALSLL+L++S+IAQSPSPAPGPA AAPPP TP PVAAPPTTPPP
Sbjct: 1 MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60
Query: 61 -EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--MPDSPPSPPGPSSSPMSPPP 120
ASPP S+STPP AAPPT+ P +ASPP MES P+PGP MPDSPPSPPGPS P S P
Sbjct: 61 MAASPPPSMSTPPMAAPPTVLPPMASPPSMESGPSPGPTTMPDSPPSPPGPSPGPSSEPS 120
Query: 121 PAPAPS-PPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV 153
PA APS PPSPPPP AGFSI GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 161
BLAST of Lsi07G012610 vs. NCBI nr
Match:
KAG6596882.1 (hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 85.1 bits (209), Expect = 5.6e-13
Identity = 86/151 (56.95%), Postives = 94/151 (62.25%), Query Frame = 0
Query: 1 MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPP 60
MA+ARAMLVLAL ALSSS+IAQ PS PA+AAAP PSTPSPVA+P + PP ASPP
Sbjct: 1 MATARAMLVLALYFFALSSSAIAQGPS----PAAAAAPRPSTPSPVASPAMS-PPAASPP 60
Query: 61 TSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPP 120
IS+PP A ASPP M SP PMPDSPPS P P
Sbjct: 61 LIISSPPMA---------ASPPSMGMSPVSVPMPDSPPSLPSPG---------------- 119
Query: 121 SPPPPSAGFSIHQGGYKAAVAAVLGGLAVVL 152
P SAGFSIH GGYKA +AAVLGG+A VL
Sbjct: 121 --PGSSAGFSIHHGGYKAGLAAVLGGMAEVL 119
BLAST of Lsi07G012610 vs. NCBI nr
Match:
XP_032465476.1 (basic proline-rich protein-like, partial [Phocoena sinus])
HSP 1 Score: 56.6 bits (135), Expect = 2.1e-04
Identity = 55/101 (54.46%), Postives = 62/101 (61.39%), Query Frame = 0
Query: 25 SPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPM 84
SP P P P+ + PPP +PSP PP PPP SPP S S PP+ +PP P SPPP
Sbjct: 98 SPPPPPPPSPPSPPPPPSPSPSPPPPPPPPPPPSPPPSPSPPPSPSPPPPP----SPPPS 157
Query: 85 ESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPP 126
P+P P P SPP PP P SP PPPP+P P PPSPPPP
Sbjct: 158 PPPPSPPPPPPSPPPPPSPPPSPSPPPPPSPPPPPPSPPPP 194
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L458 | 2.3e-36 | 80.25 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1 | [more] |
A0A6J1E5X6 | 8.2e-34 | 74.53 | classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111... | [more] |
W5PQH5 | 1.0e-04 | 57.69 | NDT80 domain-containing protein OS=Ovis aries OX=9940 PE=4 SV=1 | [more] |
A0A419Q988 | 3.0e-04 | 54.13 | Cell surface glycoprotein 1 (Fragment) OS=Clonorchis sinensis OX=79923 GN=olpB P... | [more] |
Match Name | E-value | Identity | Description | |
XP_038903480.1 | 4.6e-47 | 88.96 | classical arabinogalactan protein 9-like [Benincasa hispida] | [more] |
XP_022923372.1 | 1.7e-33 | 74.53 | classical arabinogalactan protein 9-like [Cucurbita moschata] | [more] |
XP_023553563.1 | 3.8e-33 | 75.31 | classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6596882.1 | 5.6e-13 | 56.95 | hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_032465476.1 | 2.1e-04 | 54.46 | basic proline-rich protein-like, partial [Phocoena sinus] | [more] |
Match Name | E-value | Identity | Description | |