Lsi07G012610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G012610
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionclassical arabinogalactan protein 9-like
Locationchr07: 18437373 .. 18437831 (+)
RNA-Seq ExpressionLsi07G012610
SyntenyLsi07G012610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTCTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCGTCAACCCCATCGCCGGTTGCAGCTCCCCCGACTACACCGCCCCCTGAAGCGTCACCGCCGACAAGCATCTCAACTCCACCGGCGGCGGCTCCTCCCACCATCCCACCGACGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCGCCGCCTCCGGCGCCAGCTCCGTCGCCGCCGTCGCCTCCGCCGCCGAGCGCGGGATTTTCCATCCACCAGGGCGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGGCTGGCCGTCGTCCTGGTTTAA

mRNA sequence

ATGGCTTCCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTCTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCGTCAACCCCATCGCCGGTTGCAGCTCCCCCGACTACACCGCCCCCTGAAGCGTCACCGCCGACAAGCATCTCAACTCCACCGGCGGCGGCTCCTCCCACCATCCCACCGACGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCGCCGCCTCCGGCGCCAGCTCCGTCGCCGCCGTCGCCTCCGCCGCCGAGCGCGGGATTTTCCATCCACCAGGGCGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGGCTGGCCGTCGTCCTGGTTTAA

Coding sequence (CDS)

ATGGCTTCCGCACGTGCCATGCTCGTGCTCGCCCTCTCTCTTCTTGCTCTCTCTTCCTCTTCCATTGCTCAATCTCCCTCCCCTGCTCCAGGTCCCGCCTCCGCCGCCGCACCGCCGCCGTCAACCCCATCGCCGGTTGCAGCTCCCCCGACTACACCGCCCCCTGAAGCGTCACCGCCGACAAGCATCTCAACTCCACCGGCGGCGGCTCCTCCCACCATCCCACCGACGATAGCTTCTCCACCGCCTATGGAATCGAGCCCAGCCCCAGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGGCCCAAGTTCAAGCCCAATGTCTCCGCCGCCTCCGGCGCCAGCTCCGTCGCCGCCGTCGCCTCCGCCGCCGAGCGCGGGATTTTCCATCCACCAGGGCGGGTACAAGGCGGCTGTTGCGGCGGTGTTGGGTGGGCTGGCCGTCGTCCTGGTTTAA

Protein sequence

MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV
Homology
BLAST of Lsi07G012610 vs. ExPASy TrEMBL
Match: A0A0A0L458 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.3e-36
Identity = 126/157 (80.25%), Postives = 132/157 (84.08%), Query Frame = 0

Query: 1   MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPP 60
           MASARAMLVL LSLL+LSSSSIAQSPSP+PGPAS AAPPPSTP PVA PPTTPPP ASPP
Sbjct: 1   MASARAMLVLLLSLLSLSSSSIAQSPSPSPGPASPAAPPPSTPPPVAPPPTTPPPAASPP 60

Query: 61  TSISTPPAAAPPTIPPTIASPPPMESS--PAPGP-MPDSPPSPPGPSSSPMSP--PPPAP 120
           +SISTPPAAAP   PP +ASPPPME S  PAPGP MP+ PPSP  PS SPMSP  P PAP
Sbjct: 61  SSISTPPAAAPTATPPMMASPPPMEPSTAPAPGPAMPEGPPSP--PSQSPMSPPGPAPAP 120

Query: 121 APSPPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV 153
           AP+PPS  P SAGFSIHQGGY A VAAVLGGLAVVLV
Sbjct: 121 APTPPSARPRSAGFSIHQGGYMAGVAAVLGGLAVVLV 155

BLAST of Lsi07G012610 vs. ExPASy TrEMBL
Match: A0A6J1E5X6 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111431090 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 8.2e-34
Identity = 120/161 (74.53%), Postives = 130/161 (80.75%), Query Frame = 0

Query: 1   MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP----- 60
           MA+ARAMLVLALSLL+L++S+IAQSPSPAPGPA  AAPPP TP PVAAPPTTPPP     
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 61  -EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--MPDSPPSPPGPSSSPMSPPP 120
             ASPP S+STPP AAPPT+PP +ASPP MES P+PGP  MPDSPPSPPGPS  P   P 
Sbjct: 61  MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120

Query: 121 PAPAPSPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV 153
           PA APSPP  PPP AGFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of Lsi07G012610 vs. ExPASy TrEMBL
Match: W5PQH5 (NDT80 domain-containing protein OS=Ovis aries OX=9940 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 60/104 (57.69%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 25  SPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPM 84
           SPSPAP P S    PPS PSP + PP++PPP   PP   S PP+   P+ PP+  SPPP 
Sbjct: 361 SPSPAPSPPS----PPSPPSPPSPPPSSPPPSPPPPPPPSPPPSPPSPSPPPSPPSPPPS 420

Query: 85  --ESSPAPGPMPDSPPS-PPGPSSSPMSPPPPAPAPSPPSPPPP 126
              SSP+P P P SPPS PP P  SP SPPPP P  SPPSPPPP
Sbjct: 421 PPPSSPSPAPSPPSPPSPPPSPPPSPPSPPPPPPPSSPPSPPPP 460

BLAST of Lsi07G012610 vs. ExPASy TrEMBL
Match: A0A419Q988 (Cell surface glycoprotein 1 (Fragment) OS=Clonorchis sinensis OX=79923 GN=olpB PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-04
Identity = 59/109 (54.13%), Postives = 70/109 (64.22%), Query Frame = 0

Query: 19  SSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPA--AAPPTIPP 78
           S S   SP P+P P+   +PPP +P P  +PP +PPP  SPP+  S PP+   +PP  PP
Sbjct: 451 SPSPPPSPPPSPSPSPPPSPPPPSPPPSPSPPPSPPPPPSPPSPPSPPPSPPPSPPPSPP 510

Query: 79  TIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPP 126
              SP P  S P+P P   SPPSPP PS SP SPPPP P+PSPPSPPPP
Sbjct: 511 PSPSPSPPPSPPSPPPPSPSPPSPPPPSPSPPSPPPP-PSPSPPSPPPP 558

BLAST of Lsi07G012610 vs. NCBI nr
Match: XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 4.6e-47
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0

Query: 1   MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPP 60
           MASARAMLVLALSLLAL SSSIAQSPSPAPGPASAAAPPPS+P PVAAPPTTPPP ASPP
Sbjct: 1   MASARAMLVLALSLLALFSSSIAQSPSPAPGPASAAAPPPSSPPPVAAPPTTPPPAASPP 60

Query: 61  TSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSP--MSPPPPAPAPS 120
            +ISTPPAAAPP IPP +ASPP MESSP PGPMPDSPPSPPGPS SP  MSPP PAPAPS
Sbjct: 61  PTISTPPAAAPPAIPPMMASPPSMESSPGPGPMPDSPPSPPGPSPSPMSMSPPTPAPAPS 120

Query: 121 PPSPPPPSAGFSIHQGGYKAAVAAVLGGLAVVLV 153
           PPSPPPPSAGFSIHQGGYKAA AAVLGGLAV LV
Sbjct: 121 PPSPPPPSAGFSIHQGGYKAAAAAVLGGLAVFLV 154

BLAST of Lsi07G012610 vs. NCBI nr
Match: XP_022923372.1 (classical arabinogalactan protein 9-like [Cucurbita moschata])

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-33
Identity = 120/161 (74.53%), Postives = 130/161 (80.75%), Query Frame = 0

Query: 1   MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP----- 60
           MA+ARAMLVLALSLL+L++S+IAQSPSPAPGPA  AAPPP TP PVAAPPTTPPP     
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 61  -EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--MPDSPPSPPGPSSSPMSPPP 120
             ASPP S+STPP AAPPT+PP +ASPP MES P+PGP  MPDSPPSPPGPS  P   P 
Sbjct: 61  MAASPPPSMSTPPMAAPPTVPPPMASPPSMESGPSPGPSTMPDSPPSPPGPSPGPAPGPA 120

Query: 121 PAPAPSPPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV 153
           PA APSPP  PPP AGFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 160

BLAST of Lsi07G012610 vs. NCBI nr
Match: XP_023553563.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-33
Identity = 122/162 (75.31%), Postives = 132/162 (81.48%), Query Frame = 0

Query: 1   MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPP----- 60
           MA+ARAMLVLALSLL+L++S+IAQSPSPAPGPA  AAPPP TP PVAAPPTTPPP     
Sbjct: 1   MATARAMLVLALSLLSLAASAIAQSPSPAPGPA-VAAPPPLTPPPVAAPPTTPPPTAMPP 60

Query: 61  -EASPPTSISTPPAAAPPTIPPTIASPPPMESSPAPGP--MPDSPPSPPGPSSSPMSPPP 120
             ASPP S+STPP AAPPT+ P +ASPP MES P+PGP  MPDSPPSPPGPS  P S P 
Sbjct: 61  MAASPPPSMSTPPMAAPPTVLPPMASPPSMESGPSPGPTTMPDSPPSPPGPSPGPSSEPS 120

Query: 121 PAPAPS-PPSPPPPSAGFSIHQGGYKAA-VAAVLGGLAVVLV 153
           PA APS PPSPPPP AGFSI  GGYKAA VAAVLGGLA+VLV
Sbjct: 121 PASAPSPPPSPPPPGAGFSIQHGGYKAAGVAAVLGGLAIVLV 161

BLAST of Lsi07G012610 vs. NCBI nr
Match: KAG6596882.1 (hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 5.6e-13
Identity = 86/151 (56.95%), Postives = 94/151 (62.25%), Query Frame = 0

Query: 1   MASARAMLVLALSLLALSSSSIAQSPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPP 60
           MA+ARAMLVLAL   ALSSS+IAQ PS    PA+AAAP PSTPSPVA+P  + PP ASPP
Sbjct: 1   MATARAMLVLALYFFALSSSAIAQGPS----PAAAAAPRPSTPSPVASPAMS-PPAASPP 60

Query: 61  TSISTPPAAAPPTIPPTIASPPPMESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPP 120
             IS+PP A         ASPP M  SP   PMPDSPPS P P                 
Sbjct: 61  LIISSPPMA---------ASPPSMGMSPVSVPMPDSPPSLPSPG---------------- 119

Query: 121 SPPPPSAGFSIHQGGYKAAVAAVLGGLAVVL 152
             P  SAGFSIH GGYKA +AAVLGG+A VL
Sbjct: 121 --PGSSAGFSIHHGGYKAGLAAVLGGMAEVL 119

BLAST of Lsi07G012610 vs. NCBI nr
Match: XP_032465476.1 (basic proline-rich protein-like, partial [Phocoena sinus])

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-04
Identity = 55/101 (54.46%), Postives = 62/101 (61.39%), Query Frame = 0

Query: 25  SPSPAPGPASAAAPPPSTPSPVAAPPTTPPPEASPPTSISTPPAAAPPTIPPTIASPPPM 84
           SP P P P+  + PPP +PSP   PP  PPP  SPP S S PP+ +PP  P    SPPP 
Sbjct: 98  SPPPPPPPSPPSPPPPPSPSPSPPPPPPPPPPPSPPPSPSPPPSPSPPPPP----SPPPS 157

Query: 85  ESSPAPGPMPDSPPSPPGPSSSPMSPPPPAPAPSPPSPPPP 126
              P+P P P SPP PP P  SP  PPPP+P P PPSPPPP
Sbjct: 158 PPPPSPPPPPPSPPPPPSPPPSPSPPPPPSPPPPPPSPPPP 194

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4582.3e-3680.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017230 PE=4 SV=1[more]
A0A6J1E5X68.2e-3474.53classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
W5PQH51.0e-0457.69NDT80 domain-containing protein OS=Ovis aries OX=9940 PE=4 SV=1[more]
A0A419Q9883.0e-0454.13Cell surface glycoprotein 1 (Fragment) OS=Clonorchis sinensis OX=79923 GN=olpB P... [more]
Match NameE-valueIdentityDescription
XP_038903480.14.6e-4788.96classical arabinogalactan protein 9-like [Benincasa hispida][more]
XP_022923372.11.7e-3374.53classical arabinogalactan protein 9-like [Cucurbita moschata][more]
XP_023553563.13.8e-3375.31classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo][more]
KAG6596882.15.6e-1356.95hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_032465476.12.1e-0454.46basic proline-rich protein-like, partial [Phocoena sinus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 80..97
score: 33.33
coord: 19..31
score: 32.31
coord: 38..59
score: 37.27
coord: 60..76
score: 47.06
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G012610.1Lsi07G012610.1mRNA