Lsi07G012110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G012110
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	C2H2-type domain-containing protein
Location	chr07: 17673824 .. 17674393 (+)
RNA-Seq Expression	Lsi07G012110
Synteny	Lsi07G012110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATCCTAACCAACCTCACCAAGATGAGGATGACGATTCATGGGAGATTAGGGCTTTTGCAGAAGACACCGGAAACGTTATGGGCACAACTTGGCCCCCTAGGTTTTACAATTGCACATTTTGTGGACGAGAATTTAGATCTGCCCAAGCCCTAGGTGGTCACATGAATGTCCACCGTCGCGACCGTGTACGTTTCCACCACCAAACTCAACCCATCTCATCGTCTTTCACCATCCCTACCCCTAAACTCGTCTACAACAAAAGTGACGGGGTTTGTTTCTTATACCAATTACCAAACGACAACATCGATTTTCTCAACTCCGTCACTTCGTCAAGTGCATGTCTCCAGTCGCCTTCCGCTACACTATATCCTTCGAACAGCCCAACCGCGTCGTCCTTGCAGACCCTAAAGTCGTCGGGAGAGCTCCGAGGAGGAACGTCGAGCTCCTCATCTCACTGCAGCCACATGTCTAGCAAAGGAGACGAGTCGTTAATATCAATTGATGATGGAGATGAGAAGCTTGATCTTGAGCTGAGACTTGGTCATAGGGCATCTCCAGCTTGA

mRNA sequence

ATGTGGAATCCTAACCAACCTCACCAAGATGAGGATGACGATTCATGGGAGATTAGGGCTTTTGCAGAAGACACCGGAAACGTTATGGGCACAACTTGGCCCCCTAGGTTTTACAATTGCACATTTTGTGGACGAGAATTTAGATCTGCCCAAGCCCTAGGTGGTCACATGAATGTCCACCGTCGCGACCGTGTACGTTTCCACCACCAAACTCAACCCATCTCATCGTCTTTCACCATCCCTACCCCTAAACTCGTCTACAACAAAAGTGACGGGGTTTGTTTCTTATACCAATTACCAAACGACAACATCGATTTTCTCAACTCCGTCACTTCGTCAAGTGCATGTCTCCAGTCGCCTTCCGCTACACTATATCCTTCGAACAGCCCAACCGCGTCGTCCTTGCAGACCCTAAAGTCGTCGGGAGAGCTCCGAGGAGGAACGTCGAGCTCCTCATCTCACTGCAGCCACATGTCTAGCAAAGGAGACGAGTCGTTAATATCAATTGATGATGGAGATGAGAAGCTTGATCTTGAGCTGAGACTTGGTCATAGGGCATCTCCAGCTTGA

Coding sequence (CDS)

ATGTGGAATCCTAACCAACCTCACCAAGATGAGGATGACGATTCATGGGAGATTAGGGCTTTTGCAGAAGACACCGGAAACGTTATGGGCACAACTTGGCCCCCTAGGTTTTACAATTGCACATTTTGTGGACGAGAATTTAGATCTGCCCAAGCCCTAGGTGGTCACATGAATGTCCACCGTCGCGACCGTGTACGTTTCCACCACCAAACTCAACCCATCTCATCGTCTTTCACCATCCCTACCCCTAAACTCGTCTACAACAAAAGTGACGGGGTTTGTTTCTTATACCAATTACCAAACGACAACATCGATTTTCTCAACTCCGTCACTTCGTCAAGTGCATGTCTCCAGTCGCCTTCCGCTACACTATATCCTTCGAACAGCCCAACCGCGTCGTCCTTGCAGACCCTAAAGTCGTCGGGAGAGCTCCGAGGAGGAACGTCGAGCTCCTCATCTCACTGCAGCCACATGTCTAGCAAAGGAGACGAGTCGTTAATATCAATTGATGATGGAGATGAGAAGCTTGATCTTGAGCTGAGACTTGGTCATAGGGCATCTCCAGCTTGA

Protein sequence

MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVRFHHQTQPISSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSACLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISIDDGDEKLDLELRLGHRASPA

Homology

[Close]

BLAST of Lsi07G012110 vs. ExPASy Swiss-Prot
Match: Q9LHS9 (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 GN=RBE PE=2 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 17  EIRAF--AEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVRFHHQTQPI 76
           E RAF  AE+ G   G  WPPR Y+C+FCGREF+SAQALGGHMNVHRRDR R   Q+   
Sbjct: 32  EERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSP 91

Query: 77  SSSFTIPTPK 85
           SS+     P+
Sbjct: 92  SSTDQATPPE 101

[Close]

BLAST of Lsi07G012110 vs. ExPASy Swiss-Prot
Match: O80942 (Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.8e-15
Identity = 54/134 (40.30%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 7   PHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVR 66
           P +   + SWE  AFAED  +  G+ WPPR Y C+FC REF+SAQALGGHMNVHRRDR R
Sbjct: 10  PKKSNKESSWEELAFAED--DAAGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRAR 69

Query: 67  FHHQTQPI-----SSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSACLQSPS 126
                        SSS   P+ K   N  +  C+     N   ++  +  S    L S S
Sbjct: 70  LKQADDQYLFPKSSSSPEYPSHKDSDNIHETSCYTLVF-NTKPNYFKTQHSCVIDLSSSS 129

Query: 127 ATLYPSNSPTASSL 136
           +  Y + S  +S L
Sbjct: 130 SLPYLTPSRVSSGL 140

[Close]

BLAST of Lsi07G012110 vs. ExPASy Swiss-Prot
Match: Q38895 (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 62/178 (34.83%), Postives = 88/178 (49.44%), Query Frame = 0


Query: 23  EDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVRFHHQTQPISSSFTIPT 82
           +D   ++G +WPPR Y C+FC REFRSAQALGGHMNVHRRDR R   Q  P SSS    T
Sbjct: 32  QDHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSS----T 91

Query: 83  PKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSACLQSPSATLY----------PSNSPTA 142
           P   Y   +   + Y    ++    +S  +    L  PS+  Y           S     
Sbjct: 92  PSPPYPNPN---YSYSTMANSPPPHHSPLTLFPTLSPPSSPRYRAGLIRSLSPKSKHTPE 151

Query: 143 SSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLIS-------IDDGDEKLDLELRLG 184
           ++ +T KSS  +  G ++  +         ++ +IS       I++ ++ LDLELRLG
Sbjct: 152 NACKTKKSSLLVEAGEATRFTSKDACKILRNDEIISLELEIGLINESEQDLDLELRLG 202

[Close]

BLAST of Lsi07G012110 vs. ExPASy Swiss-Prot
Match: Q9SLB8 (Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.1e-12
Identity = 60/176 (34.09%), Postives = 82/176 (46.59%), Query Frame = 0


Query: 33  WPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVRF----------HHQTQPI-------- 92
           WPP+ Y C+FC REFRSAQALGGHMNVHRRDR +           HH T PI        
Sbjct: 44  WPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWLFEPHHHT-PIANPNPNFS 103

Query: 93  -SSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSACLQSPSATLYPSNSPTAS 152
            SSS +  T  L  + ++        P+   D L+S TS    +          N     
Sbjct: 104 SSSSSSTTTAHLEPSLTNQRSKTTPFPSARFDLLDSTTSYGGLMMDRE-----KNKSNVC 163

Query: 153 SLQTLKSSGELRGGTSSSSSHCSHMSSKGDESL-----ISIDDGDEKLDLELRLGH 185
           S +  KS+ +         S    M+ K D+ +     +S+ + ++ LDLELRLG+
Sbjct: 164 SREIKKSAIDACHSVRCEISRGDLMNKKDDQVMGLELGMSLRNPNQVLDLELRLGY 213

[Close]

BLAST of Lsi07G012110 vs. ExPASy Swiss-Prot
Match: Q9SR34 (Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-05
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 36 RFYNCTFCGREFRSAQALGGHMNVHRRDRVRFHHQ 71
          R Y C+FC R F +AQALGGHMN+HRRDR +   +
Sbjct: 33 RSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQK 67

[Close]

BLAST of Lsi07G012110 vs. ExPASy TrEMBL
Match: E2IBP9 (Palmate-like pentafoliata 1 transcription factor (Fragment) OS=Cucumis sativus OX=3659 GN=PALM1 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.8e-86
Identity = 160/193 (82.90%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60
           MWNPNQ HQDEDDDSWEIRAFAEDTGN+MGTTWPPRFYNCTFCGREFRSAQALGGHMNVH
Sbjct: 1   MWNPNQAHQDEDDDSWEIRAFAEDTGNIMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60

Query: 61  RRDRVRFHHQ-----TQPISSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSA 120
           RRDRVRFHHQ      QPIS SFTIPTPKL+YN+ D VCFLYQLPNDNI+FLNS+TSS +
Sbjct: 61  RRDRVRFHHQIQPNSIQPISPSFTIPTPKLIYNEIDEVCFLYQLPNDNINFLNSITSSDS 120

Query: 121 CLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISIDDGDEK 180
           CLQS     +PS++ TASSLQ+LKS GELRGGTSSSSSHCSH+SSKGD+SLISI+DG+EK
Sbjct: 121 CLQSSFTAQHPSSTRTASSLQSLKSPGELRGGTSSSSSHCSHISSKGDDSLISINDGNEK 180

Query: 181 LDLELRLGHRASP 189
           +DLELRLGHRASP
Sbjct: 181 VDLELRLGHRASP 193

[Close]

BLAST of Lsi07G012110 vs. ExPASy TrEMBL
Match: A0A5A7UCW5 (Transcriptional regulator SUPERMAN-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001690 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.7e-86
Identity = 163/194 (84.02%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60
           M NPNQ HQDED DSWEIRAFAEDTGN+MGTTWPPRFYNCTFCGREFRSAQALGGHMNVH
Sbjct: 1   MLNPNQAHQDEDGDSWEIRAFAEDTGNIMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60

Query: 61  RRDRVRFHHQT-----QPISSSFTIPTPKLVYNKS-DGVCFLYQLPNDNIDFLNSVTSSS 120
           RRDRVRFHHQT     Q +S SFTIPTPKL+YN   D VCFLYQLPNDNIDFLNS+TSS 
Sbjct: 61  RRDRVRFHHQTQLNSIQHVSPSFTIPTPKLIYNNEIDEVCFLYQLPNDNIDFLNSITSSG 120

Query: 121 ACLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISIDDGDE 180
           ACLQSPS   +PS+S TASSLQ+LKS GELRGGTSSSSSHCSHMSSKGD+SLISI+DG+E
Sbjct: 121 ACLQSPSTAQHPSSSRTASSLQSLKSPGELRGGTSSSSSHCSHMSSKGDDSLISINDGNE 180

Query: 181 KLDLELRLGHRASP 189
           K+DLELRLGHRASP
Sbjct: 181 KIDLELRLGHRASP 194

[Close]

BLAST of Lsi07G012110 vs. ExPASy TrEMBL
Match: A0A1S3BKB5 (transcriptional regulator SUPERMAN-like OS=Cucumis melo OX=3656 GN=LOC103490792 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.7e-86
Identity = 163/194 (84.02%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60
           M NPNQ HQDED DSWEIRAFAEDTGN+MGTTWPPRFYNCTFCGREFRSAQALGGHMNVH
Sbjct: 71  MLNPNQAHQDEDGDSWEIRAFAEDTGNIMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 130

Query: 61  RRDRVRFHHQT-----QPISSSFTIPTPKLVYNKS-DGVCFLYQLPNDNIDFLNSVTSSS 120
           RRDRVRFHHQT     Q +S SFTIPTPKL+YN   D VCFLYQLPNDNIDFLNS+TSS 
Sbjct: 131 RRDRVRFHHQTQLNSIQHVSPSFTIPTPKLIYNNEIDEVCFLYQLPNDNIDFLNSITSSG 190

Query: 121 ACLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISIDDGDE 180
           ACLQSPS   +PS+S TASSLQ+LKS GELRGGTSSSSSHCSHMSSKGD+SLISI+DG+E
Sbjct: 191 ACLQSPSTAQHPSSSRTASSLQSLKSPGELRGGTSSSSSHCSHMSSKGDDSLISINDGNE 250

Query: 181 KLDLELRLGHRASP 189
           K+DLELRLGHRASP
Sbjct: 251 KIDLELRLGHRASP 264

[Close]

BLAST of Lsi07G012110 vs. ExPASy TrEMBL
Match: A0A6J1CUC9 (zinc finger protein 11-like OS=Momordica charantia OX=3673 GN=LOC111014851 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 9.7e-69
Identity = 145/201 (72.14%), Postives = 158/201 (78.61%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60
           MWNPNQPHQD+DDDSWEIRAFAEDTGN+MGTTWPPRFY CTFC REFRSAQALGGHMNVH
Sbjct: 1   MWNPNQPHQDDDDDSWEIRAFAEDTGNIMGTTWPPRFYTCTFCRREFRSAQALGGHMNVH 60

Query: 61  RRDRVRFHHQTQ---------PISSSFTIPTPKLVY-NKSDGVCFLYQLPNDNIDFLNSV 120
           RRDR RFHHQTQ         P SSSF +PT + +Y     G CF YQLPNDN  FLN +
Sbjct: 61  RRDRARFHHQTQPNSIQPISSPSSSSFAVPTAEDIYGGGGGGFCFFYQLPNDNGGFLNPI 120

Query: 121 TSSSACLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGD-ESLISI 180
           T S ACL+SP    YPSNS   SSL + KS  ELRG +S+SSSHCSH+SSKGD ESLISI
Sbjct: 121 T-SGACLRSP----YPSNS---SSLPSAKSPEELRGTSSASSSHCSHISSKGDHESLISI 180

Query: 181 DDGDE-KLDLELRLGHRASPA 190
           DDGD+ KLDLELRLGHR SP+
Sbjct: 181 DDGDDPKLDLELRLGHRPSPS 193

[Close]

BLAST of Lsi07G012110 vs. ExPASy TrEMBL
Match: A0A2I4DWF2 (transcriptional regulator SUPERMAN-like OS=Juglans regia OX=51240 GN=LOC108984087 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 6.6e-41
Identity = 107/197 (54.31%), Postives = 126/197 (63.96%), Query Frame = 0


Query: 1   MWNPN-QPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNV 60
           MWN   QPH  ED+DSWE+RAFAEDTGN MGTTWPPR Y CTFC REFRSAQALGGHMNV
Sbjct: 41  MWNSTMQPH--EDEDSWEVRAFAEDTGNAMGTTWPPRSYTCTFCRREFRSAQALGGHMNV 100

Query: 61  HRRDRVRFHH---------QTQPISSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSV 120
           HRRDR R H           T P +SSF IPT + V N   G+C LYQLP+ +    +S 
Sbjct: 101 HRRDRARLHQAQPNPSSSSPTSPSTSSFIIPTQEFVTN--GGLCLLYQLPSPSGAAFSS- 160

Query: 121 TSSSACLQSPSATLYPSNSPTASSLQTLKSS--GELRGGTSSSSSHCSHMSSKGDESLIS 180
           T  +AC++SPS  L  S SP  + +     S    L G   ++SS C   S+K  E  ++
Sbjct: 161 TPINACIESPSTLLSISPSPPNNLMSPCSPSINFPLSGSPGTNSSRC--YSNKAIEPSLT 220

Query: 181 IDDGDEKLDLELRLGHR 186
           ID+GDE LDLELRLG R
Sbjct: 221 IDNGDEDLDLELRLGQR 230

[Close]

BLAST of Lsi07G012110 vs. NCBI nr
Match: XP_038905278.1 (transcriptional regulator SUPERMAN-like [Benincasa hispida])

HSP 1 Score: 338.6 bits (867), Expect = 3.5e-89
Identity = 166/194 (85.57%), Postives = 176/194 (90.72%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60
           MWNP+Q HQDEDDDSWEIRAFAEDT NVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH
Sbjct: 1   MWNPSQAHQDEDDDSWEIRAFAEDTENVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60

Query: 61  RRDRVRFHH-----QTQPISSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSA 120
           RRDRVR HH       QPISSSFTIP PKLVYN+SDGVCFLYQLP ++IDFLNS+TSSSA
Sbjct: 61  RRDRVRLHHHPHSNSIQPISSSFTIPAPKLVYNESDGVCFLYQLPKNSIDFLNSITSSSA 120

Query: 121 CLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISIDDGDEK 180
           CLQSPSAT YPSN PT SSLQ++KS GELRGGTSSSSSHCSHMS KGD+S+ISIDDG+EK
Sbjct: 121 CLQSPSATQYPSNIPTTSSLQSVKSPGELRGGTSSSSSHCSHMSGKGDDSIISIDDGNEK 180

Query: 181 LDLELRLGHRASPA 190
           LDLELRLGHR SPA
Sbjct: 181 LDLELRLGHRTSPA 194

[Close]

BLAST of Lsi07G012110 vs. NCBI nr
Match: XP_004148758.1 (transcriptional regulator SUPERMAN [Cucumis sativus] >ADO15281.1 palmate-like pentafoliata 1 transcription factor, partial [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 3.6e-86
Identity = 160/193 (82.90%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60
           MWNPNQ HQDEDDDSWEIRAFAEDTGN+MGTTWPPRFYNCTFCGREFRSAQALGGHMNVH
Sbjct: 1   MWNPNQAHQDEDDDSWEIRAFAEDTGNIMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60

Query: 61  RRDRVRFHHQ-----TQPISSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSA 120
           RRDRVRFHHQ      QPIS SFTIPTPKL+YN+ D VCFLYQLPNDNI+FLNS+TSS +
Sbjct: 61  RRDRVRFHHQIQPNSIQPISPSFTIPTPKLIYNEIDEVCFLYQLPNDNINFLNSITSSDS 120

Query: 121 CLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISIDDGDEK 180
           CLQS     +PS++ TASSLQ+LKS GELRGGTSSSSSHCSH+SSKGD+SLISI+DG+EK
Sbjct: 121 CLQSSFTAQHPSSTRTASSLQSLKSPGELRGGTSSSSSHCSHISSKGDDSLISINDGNEK 180

Query: 181 LDLELRLGHRASP 189
           +DLELRLGHRASP
Sbjct: 181 VDLELRLGHRASP 193

[Close]

BLAST of Lsi07G012110 vs. NCBI nr
Match: KAA0053050.1 (transcriptional regulator SUPERMAN-like [Cucumis melo var. makuwa] >TYK11505.1 transcriptional regulator SUPERMAN-like [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 163/194 (84.02%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60
           M NPNQ HQDED DSWEIRAFAEDTGN+MGTTWPPRFYNCTFCGREFRSAQALGGHMNVH
Sbjct: 1   MLNPNQAHQDEDGDSWEIRAFAEDTGNIMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60

Query: 61  RRDRVRFHHQT-----QPISSSFTIPTPKLVYNKS-DGVCFLYQLPNDNIDFLNSVTSSS 120
           RRDRVRFHHQT     Q +S SFTIPTPKL+YN   D VCFLYQLPNDNIDFLNS+TSS 
Sbjct: 61  RRDRVRFHHQTQLNSIQHVSPSFTIPTPKLIYNNEIDEVCFLYQLPNDNIDFLNSITSSG 120

Query: 121 ACLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISIDDGDE 180
           ACLQSPS   +PS+S TASSLQ+LKS GELRGGTSSSSSHCSHMSSKGD+SLISI+DG+E
Sbjct: 121 ACLQSPSTAQHPSSSRTASSLQSLKSPGELRGGTSSSSSHCSHMSSKGDDSLISINDGNE 180

Query: 181 KLDLELRLGHRASP 189
           K+DLELRLGHRASP
Sbjct: 181 KIDLELRLGHRASP 194

[Close]

BLAST of Lsi07G012110 vs. NCBI nr
Match: XP_008448698.1 (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 163/194 (84.02%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60
           M NPNQ HQDED DSWEIRAFAEDTGN+MGTTWPPRFYNCTFCGREFRSAQALGGHMNVH
Sbjct: 71  MLNPNQAHQDEDGDSWEIRAFAEDTGNIMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 130

Query: 61  RRDRVRFHHQT-----QPISSSFTIPTPKLVYNKS-DGVCFLYQLPNDNIDFLNSVTSSS 120
           RRDRVRFHHQT     Q +S SFTIPTPKL+YN   D VCFLYQLPNDNIDFLNS+TSS 
Sbjct: 131 RRDRVRFHHQTQLNSIQHVSPSFTIPTPKLIYNNEIDEVCFLYQLPNDNIDFLNSITSSG 190

Query: 121 ACLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISIDDGDE 180
           ACLQSPS   +PS+S TASSLQ+LKS GELRGGTSSSSSHCSHMSSKGD+SLISI+DG+E
Sbjct: 191 ACLQSPSTAQHPSSSRTASSLQSLKSPGELRGGTSSSSSHCSHMSSKGDDSLISINDGNE 250

Query: 181 KLDLELRLGHRASP 189
           K+DLELRLGHRASP
Sbjct: 251 KIDLELRLGHRASP 264

[Close]

BLAST of Lsi07G012110 vs. NCBI nr
Match: KGN55789.2 (hypothetical protein Csa_011469 [Cucumis sativus])

HSP 1 Score: 271.2 bits (692), Expect = 6.9e-69
Identity = 139/193 (72.02%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60
           MWNPNQ HQDEDDDSWEIRAFAEDTGN+MGTTWPPRFYNCTFCGREFRSAQALGGHMNVH
Sbjct: 1   MWNPNQAHQDEDDDSWEIRAFAEDTGNIMGTTWPPRFYNCTFCGREFRSAQALGGHMNVH 60

Query: 61  RRDRVRFHHQ-----TQPISSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSA 120
           RRDRVRFHHQ      QPIS SFTIPTPKL+YN+ D   F  Q                 
Sbjct: 61  RRDRVRFHHQIQPNSIQPISPSFTIPTPKLIYNEIDESSFTAQ----------------- 120

Query: 121 CLQSPSATLYPSNSPTASSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLISIDDGDEK 180
                    +PS++ TASSLQ+LKS GELRGGTSSSSSHCSH+SSKGD+SLISI+DG+EK
Sbjct: 121 ---------HPSSTRTASSLQSLKSPGELRGGTSSSSSHCSHISSKGDDSLISINDGNEK 167

Query: 181 LDLELRLGHRASP 189
           +DLELRLGHRASP
Sbjct: 181 VDLELRLGHRASP 167

[Close]

BLAST of Lsi07G012110 vs. TAIR 10
Match: AT4G17810.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-25
Identity = 83/211 (39.34%), Postives = 108/211 (51.18%), Query Frame = 0


Query: 1   MWNPNQPHQDEDDD-SWEIRAFAEDT-GNVMGTTWPPRFYNCTFCGREFRSAQALGGHMN 60
           MWNPN+  + EDDD SWE++AF +DT GN+ GTTWPPR Y C FC REFRSAQALGGHMN
Sbjct: 7   MWNPNKIEELEDDDESWEVKAFEQDTKGNISGTTWPPRSYTCNFCRREFRSAQALGGHMN 66

Query: 61  VHRRDRVRFH-HQTQPISSSF--------------TIPTPKLVYNKS----DGVCFLYQL 120
           VHRRDR     HQ   ++++                +PT  L+   +    +G+   YQL
Sbjct: 67  VHRRDRASSRAHQGSTVAAAARSGHGGMLLNSCAPPLPTTTLIIQSTASNIEGLSHFYQL 126

Query: 121 PNDNIDFLNSVTSSSACLQSPSATLYPSNS--PTASSLQTLKSSGELRGGTSSSSSHCSH 180
            N +  F NS              LY + S  P+      L S  E+             
Sbjct: 127 QNPSGIFGNS---------GDMVNLYGTTSFPPSNLPFSMLNSPVEV-------PPRLIE 186

Query: 181 MSSKGDESLISIDDGD----EKLDLELRLGH 185
            S+  DES+ S+ +      ++LDLELRLGH
Sbjct: 187 YSTGDDESIGSMKEATGTSVDELDLELRLGH 201

[Close]

BLAST of Lsi07G012110 vs. TAIR 10
Match: AT5G06070.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-16
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 17  EIRAF--AEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVRFHHQTQPI 76
           E RAF  AE+ G   G  WPPR Y+C+FCGREF+SAQALGGHMNVHRRDR R   Q+   
Sbjct: 32  EERAFASAEEYGGGGGCMWPPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSP 91

Query: 77  SSSFTIPTPK 85
           SS+     P+
Sbjct: 92  SSTDQATPPE 101

[Close]

BLAST of Lsi07G012110 vs. TAIR 10
Match: AT2G37740.1 (zinc-finger protein 10 )

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-16
Identity = 54/134 (40.30%), Postives = 69/134 (51.49%), Query Frame = 0


Query: 7   PHQDEDDDSWEIRAFAEDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVR 66
           P +   + SWE  AFAED  +  G+ WPPR Y C+FC REF+SAQALGGHMNVHRRDR R
Sbjct: 10  PKKSNKESSWEELAFAED--DAAGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRAR 69

Query: 67  FHHQTQPI-----SSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSACLQSPS 126
                        SSS   P+ K   N  +  C+     N   ++  +  S    L S S
Sbjct: 70  LKQADDQYLFPKSSSSPEYPSHKDSDNIHETSCYTLVF-NTKPNYFKTQHSCVIDLSSSS 129

Query: 127 ATLYPSNSPTASSL 136
           +  Y + S  +S L
Sbjct: 130 SLPYLTPSRVSSGL 140

[Close]

BLAST of Lsi07G012110 vs. TAIR 10
Match: AT3G23130.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 8.0e-15
Identity = 62/178 (34.83%), Postives = 88/178 (49.44%), Query Frame = 0


Query: 23  EDTGNVMGTTWPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVRFHHQTQPISSSFTIPT 82
           +D   ++G +WPPR Y C+FC REFRSAQALGGHMNVHRRDR R   Q  P SSS    T
Sbjct: 32  QDHDYLLGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSS----T 91

Query: 83  PKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSACLQSPSATLY----------PSNSPTA 142
           P   Y   +   + Y    ++    +S  +    L  PS+  Y           S     
Sbjct: 92  PSPPYPNPN---YSYSTMANSPPPHHSPLTLFPTLSPPSSPRYRAGLIRSLSPKSKHTPE 151

Query: 143 SSLQTLKSSGELRGGTSSSSSHCSHMSSKGDESLIS-------IDDGDEKLDLELRLG 184
           ++ +T KSS  +  G ++  +         ++ +IS       I++ ++ LDLELRLG
Sbjct: 152 NACKTKKSSLLVEAGEATRFTSKDACKILRNDEIISLELEIGLINESEQDLDLELRLG 202

[Close]

BLAST of Lsi07G012110 vs. TAIR 10
Match: AT2G42410.1 (zinc finger protein 11 )

HSP 1 Score: 72.0 bits (175), Expect = 5.7e-13
Identity = 60/176 (34.09%), Postives = 82/176 (46.59%), Query Frame = 0


Query: 33  WPPRFYNCTFCGREFRSAQALGGHMNVHRRDRVRF----------HHQTQPI-------- 92
           WPP+ Y C+FC REFRSAQALGGHMNVHRRDR +           HH T PI        
Sbjct: 44  WPPKNYTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWLFEPHHHT-PIANPNPNFS 103

Query: 93  -SSSFTIPTPKLVYNKSDGVCFLYQLPNDNIDFLNSVTSSSACLQSPSATLYPSNSPTAS 152
            SSS +  T  L  + ++        P+   D L+S TS    +          N     
Sbjct: 104 SSSSSSTTTAHLEPSLTNQRSKTTPFPSARFDLLDSTTSYGGLMMDRE-----KNKSNVC 163

Query: 153 SLQTLKSSGELRGGTSSSSSHCSHMSSKGDESL-----ISIDDGDEKLDLELRLGH 185
           S +  KS+ +         S    M+ K D+ +     +S+ + ++ LDLELRLG+
Sbjct: 164 SREIKKSAIDACHSVRCEISRGDLMNKKDDQVMGLELGMSLRNPNQVLDLELRLGY 213

The following BLAST results are available for this feature:

BLAST of Lsi07G012110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS9	2.0e-15	58.57	Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 G...	[more]
O80942	7.8e-15	40.30	Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1	[more]
Q38895	1.1e-13	34.83	Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 S...	[more]
Q9SLB8	8.1e-12	34.09	Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1	[more]
Q9SR34	1.9e-05	60.00	Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1	[more]

BLAST of Lsi07G012110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2IBP9	1.8e-86	82.90	Palmate-like pentafoliata 1 transcription factor (Fragment) OS=Cucumis sativus O...	[more]
A0A5A7UCW5	6.7e-86	84.02	Transcriptional regulator SUPERMAN-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BKB5	6.7e-86	84.02	transcriptional regulator SUPERMAN-like OS=Cucumis melo OX=3656 GN=LOC103490792 ...	[more]
A0A6J1CUC9	9.7e-69	72.14	zinc finger protein 11-like OS=Momordica charantia OX=3673 GN=LOC111014851 PE=4 ...	[more]
A0A2I4DWF2	6.6e-41	54.31	transcriptional regulator SUPERMAN-like OS=Juglans regia OX=51240 GN=LOC10898408...	[more]

BLAST of Lsi07G012110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905278.1	3.5e-89	85.57	transcriptional regulator SUPERMAN-like [Benincasa hispida]	[more]
XP_004148758.1	3.6e-86	82.90	transcriptional regulator SUPERMAN [Cucumis sativus] >ADO15281.1 palmate-like pe...	[more]
KAA0053050.1	1.4e-85	84.02	transcriptional regulator SUPERMAN-like [Cucumis melo var. makuwa] >TYK11505.1 t...	[more]
XP_008448698.1	1.4e-85	84.02	PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo]	[more]
KGN55789.2	6.9e-69	72.02	hypothetical protein Csa_011469 [Cucumis sativus]	[more]

BLAST of Lsi07G012110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17810.1	2.2e-25	39.34	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G06070.1	1.5e-16	58.57	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT2G37740.1	5.5e-16	40.30	zinc-finger protein 10	[more]
AT3G23130.1	8.0e-15	34.83	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT2G42410.1	5.7e-13	34.09	zinc finger protein 11	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 38..60 e-value: 0.0036 score: 26.5
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 40..60
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 38..65 score: 11.759394
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 38..62 e-value: 1.5E-7 score: 31.3
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 29..80 e-value: 5.2E-6 score: 28.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..163
None	No IPR available	PANTHER	PTHR45801	OS07G0101800 PROTEIN	coord: 6..185
None	No IPR available	PANTHER	PTHR45801:SF5	OS07G0101800 PROTEIN	coord: 6..185
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 35..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G012110.1	Lsi07G012110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016132	brassinosteroid biosynthetic process
biological_process	GO:0010268	brassinosteroid homeostasis
biological_process	GO:0016125	sterol metabolic process
cellular_component	GO:0005783	endoplasmic reticulum
molecular_function	GO:0005488	binding
molecular_function	GO:0051777	ent-kaurenoate oxidase activity