Lsi07G011640 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G011640
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr07: 17101274 .. 17102191 (-)
RNA-Seq ExpressionLsi07G011640
SyntenyLsi07G011640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTATCGGTATCCTCTTCAGGACCGGTTGCTTCTGATTTTTGTTTATACGTTTGGAGAAACCTGCTAAGCCCGCCTTTCTTACCCGGTGTGATTCAATCTTTCAGCTCAAACTTTCCTATCGTCCTTAGGAAAAGGTAGTCGTACTCTTACCTTTTCCTTTTCTTGCCCGAGCCAAGGGATCATTCTGTCTGTTTCTACCAAAAAGTTCGCTATCTATTAGTTGCCGTAATCGAATGTATTTCTCATTTCGTGTTAGCTCTTGAAGCACTCCACCATGAATAAGAGTATTCGGGTTGGATAGGCAGTCGAGATAGGAACTCCTATCTGTAGGGCGGGCTTTCAAGACAGAAATGCACTACTCCATCTGGAAAGAGCTTTCCCTCGTGGCTTGTATGAAGGGCCCCTATGGAGACGCAGGAGATGCAGGAGCCGCCAGCCGGATCGACGACCCAACAATGATAGGCCAGAGGGATAGGCTCATTCGACTAATTAGTGATCCCTGGCCCTACCTAAGATAGAGATGCCCCTGAAATTAGGGGATTGGTTGATCGGAAAGCTCGGGCAGGAGTAGGACATTCCATAAAAATCTTTCAGATCCTCCCCCTCGTCAACTCGGTCCTAGAAGTACAATGGTGGGTCCCTCCGGAACTGGTAATCCCCGAAAGACTTTCAAGGAGCCTTGTTCAGCAGGTGCGCTGCAAGTATTCTTTCACAAGTTTGACGCAAGTCGTACTTCCCAGCCCTCTTAGCTACTTGTACTAACAAACTAGGGCGCTATATGGAAGTTCGTGCCTGCTTATCCCGGCTACAATAACTATCGAACAGCGATCCATCTGAAGAATGGCGCTTGTATATCCCTAGGCGTGGGTCTGTACTTTCCCCTTGGCCCGAACTTTAGTTCCATTCGCTCCTAA

mRNA sequence

ATGCGGCGGGCTTTCAAGACAGAAATGCACTACTCCATCTGGAAAGAGCTTTCCCTCGTGGCTTGTATGAAGGGCCCCTATGGAGACGCAGGAGATGCAGGAGCCGCCAGCCGGATCGACGACCCAACAATGATAGGCCAGAGGGATAGGCTCATTCGACTAATTAATCCTCCCCCTCGTCAACTCGGTCCTAGAAGTACAATGGTGGGTCCCTCCGGAACTGGTAATCCCCGAAAGACTTTCAAGGAGCCTTGTTCAGCAGGTGCGCTGCAAGGCGCTATATGGAAGTTCGTGCCTGCTTATCCCGGCTACAATAACTATCGAACAGCGATCCATCTGAAGAATGGCGCTTGTATATCCCTAGGCGTGGGTCTGTACTTTCCCCTTGGCCCGAACTTTAGTTCCATTCGCTCCTAA

Coding sequence (CDS)

ATGCGGCGGGCTTTCAAGACAGAAATGCACTACTCCATCTGGAAAGAGCTTTCCCTCGTGGCTTGTATGAAGGGCCCCTATGGAGACGCAGGAGATGCAGGAGCCGCCAGCCGGATCGACGACCCAACAATGATAGGCCAGAGGGATAGGCTCATTCGACTAATTAATCCTCCCCCTCGTCAACTCGGTCCTAGAAGTACAATGGTGGGTCCCTCCGGAACTGGTAATCCCCGAAAGACTTTCAAGGAGCCTTGTTCAGCAGGTGCGCTGCAAGGCGCTATATGGAAGTTCGTGCCTGCTTATCCCGGCTACAATAACTATCGAACAGCGATCCATCTGAAGAATGGCGCTTGTATATCCCTAGGCGTGGGTCTGTACTTTCCCCTTGGCCCGAACTTTAGTTCCATTCGCTCCTAA

Protein sequence

MRRAFKTEMHYSIWKELSLVACMKGPYGDAGDAGAASRIDDPTMIGQRDRLIRLINPPPRQLGPRSTMVGPSGTGNPRKTFKEPCSAGALQGAIWKFVPAYPGYNNYRTAIHLKNGACISLGVGLYFPLGPNFSSIRS
Homology
[Close]
BLAST of Lsi07G011640 vs. ExPASy Swiss-Prot
Match: P93297 (Uncharacterized mitochondrial protein AtMg00400 OS=Arabidopsis thaliana OX=3702 GN=AtMg00400 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-06
Identity = 40/93 (43.01%), Postives = 46/93 (49.46%), Query Frame = 0 

Query: 64  PRSTMVGPSGTGNPRKT----------FKEPCSAGALQGAIWK---------FVPAYPGY 123
           P STMVGPSGTGN R T           +E  +   L     K          +PA    
Sbjct: 12  PISTMVGPSGTGNLRLTSFQQVRRSILSQERRNPAPLATCTKKKLGRKEEPLLIPA--TI 71

Query: 124 NNYRTAIHLKNGACISLGVGLYFPLGPNFSSIR 138
           NNYR AIHLKNGA ISL VGLYF     F +++
Sbjct: 72  NNYRRAIHLKNGARISLDVGLYFFRRARFGTLK 102

[Close]
BLAST of Lsi07G011640 vs. ExPASy TrEMBL
Match: B9TCL0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1979370 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 91  QGAIWKFVPAYPGYNNYRTAIHLKNGACISLGVGLYFPL 130
           Q AI KFVPA+PGYNNYRTAIHLKNGA ISL VGLYF L
Sbjct: 81  QDAIRKFVPAHPGYNNYRTAIHLKNGARISLDVGLYFSL 119

[Close]
BLAST of Lsi07G011640 vs. NCBI nr
Match: EEF26404.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-08
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 91  QGAIWKFVPAYPGYNNYRTAIHLKNGACISLGVGLYFPL 130
           Q AI KFVPA+PGYNNYRTAIHLKNGA ISL VGLYF L
Sbjct: 81  QDAIRKFVPAHPGYNNYRTAIHLKNGARISLDVGLYFSL 119

[Close]
BLAST of Lsi07G011640 vs. NCBI nr
Match: P93297.1 (RecName: Full=Uncharacterized mitochondrial protein AtMg00400; AltName: Full=ORF157 [Arabidopsis thaliana] >CAA69777.1 unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 54.3 bits (129), Expect = 9.7e-04
Identity = 40/93 (43.01%), Postives = 46/93 (49.46%), Query Frame = 0 

Query: 64  PRSTMVGPSGTGNPRKT----------FKEPCSAGALQGAIWK---------FVPAYPGY 123
           P STMVGPSGTGN R T           +E  +   L     K          +PA    
Sbjct: 12  PISTMVGPSGTGNLRLTSFQQVRRSILSQERRNPAPLATCTKKKLGRKEEPLLIPA--TI 71

Query: 124 NNYRTAIHLKNGACISLGVGLYFPLGPNFSSIR 138
           NNYR AIHLKNGA ISL VGLYF     F +++
Sbjct: 72  NNYRRAIHLKNGARISLDVGLYFFRRARFGTLK 102

[Close]
BLAST of Lsi07G011640 vs. TAIR 10
Match: ATMG00400.1 (hypothetical protein )

HSP 1 Score: 54.3 bits (129), Expect = 9.0e-08
Identity = 40/93 (43.01%), Postives = 46/93 (49.46%), Query Frame = 0 

Query: 64  PRSTMVGPSGTGNPRKT----------FKEPCSAGALQGAIWK---------FVPAYPGY 123
           P STMVGPSGTGN R T           +E  +   L     K          +PA    
Sbjct: 12  PISTMVGPSGTGNLRLTSFQQVRRSILSQERRNPAPLATCTKKKLGRKEEPLLIPA--TI 71

Query: 124 NNYRTAIHLKNGACISLGVGLYFPLGPNFSSIR 138
           NNYR AIHLKNGA ISL VGLYF     F +++
Sbjct: 72  NNYRRAIHLKNGARISLDVGLYFFRRARFGTLK 102

The following BLAST results are available for this feature:
BLAST of Lsi07G011640 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P932971.3e-0643.01Uncharacterized mitochondrial protein AtMg00400 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Lsi07G011640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
B9TCL01.1e-0884.62Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1979370 PE=4 SV=1[more]
BLAST of Lsi07G011640 vs. NCBI nr
Match NameE-valueIdentityDescription
EEF26404.12.2e-0884.62conserved hypothetical protein [Ricinus communis][more]
P93297.19.7e-0443.01RecName: Full=Uncharacterized mitochondrial protein AtMg00400; AltName: Full=ORF... [more]
BLAST of Lsi07G011640 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00400.19.0e-0843.01hypothetical protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G011640.1Lsi07G011640.1mRNA