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Lsi07G010850 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTTTCAACAAGGTGTTCTTCTTCTTGATCTACAACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAGCAACCCCGCTTCCTCATAGTGGCCATTCGAGCCTCCGACCTATTACACCTGATGATTGTACTGTCGTAGCTCTTTCGAATCCCGAGAAGGCGTTTGAGGACGAGACATGTTGTGTGTGCTTGTCGAGTATGGGGAACAGGGACAATGGGGTTGGCACGAGTGTTCTTCCTTGCTTGCACGAGTTTCATAAGGTATGCGTCGATCGTTGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGAGCGTCATGAAGATGGGACTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA ATGGTTTTCAACAAGGTGTTCTTCTTCTTGATCTACAACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAGCAACCCCGCTTCCTCATAGTGGCCATTCGAGCCTCCGACCTATTACACCTGATGATTGTACTGTCGTAGCTCTTTCGAATCCCGAGAAGGCGTTTGAGGACGAGACATGTTGTGTGTGCTTGTCGAGTATGGGGAACAGGGACAATGGGGTTGGCACGAGTGTTCTTCCTTGCTTGCACGAGTTTCATAAGGTATGCGTCGATCGTTGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGAGCGTCATGAAGATGGGACTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA ATGGTTTTCAACAAGGTGTTCTTCTTCTTGATCTACAACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAGCAACCCCGCTTCCTCATAGTGGCCATTCGAGCCTCCGACCTATTACACCTGATGATTGTACTGTCGTAGCTCTTTCGAATCCCGAGAAGGCGTTTGAGGACGAGACATGTTGTGTGTGCTTGTCGAGTATGGGGAACAGGGACAATGGGGTTGGCACGAGTGTTCTTCCTTGCTTGCACGAGTTTCATAAGGTATGCGTCGATCGTTGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGAGCGTCATGAAGATGGGACTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA MVFNKVFFFLIYNNFIGFRSKPRFKQAATPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF Homology
BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: Q91XF4 (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 4.1e-08 Identity = 27/86 (31.40%), Postives = 43/86 (50.00%), Query Frame = 0
BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: Q9H6Y7 (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 5.3e-08 Identity = 25/79 (31.65%), Postives = 40/79 (50.63%), Query Frame = 0
BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: Q5XIL0 (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 9.0e-08 Identity = 24/79 (30.38%), Postives = 40/79 (50.63%), Query Frame = 0
BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: F4HZZ5 (Receptor homology region, transmembrane domain- and RING domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=RMR5 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07 Identity = 30/98 (30.61%), Postives = 45/98 (45.92%), Query Frame = 0
BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: Q9M2S6 (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07 Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0
BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A0A0L4W7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 PE=4 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62 Identity = 119/146 (81.51%), Postives = 127/146 (86.99%), Query Frame = 0
BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A5D3CJ45 (E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00530 PE=4 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59 Identity = 120/151 (79.47%), Postives = 127/151 (84.11%), Query Frame = 0
BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A6J1CW69 (E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC111014786 PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42 Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 0
BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A7N2R4T7 (RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24 Identity = 70/147 (47.62%), Postives = 88/147 (59.86%), Query Frame = 0
BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A6A1UIA7 (Protein preY, mitochondrial OS=Morella rubra OX=262757 GN=CJ030_MR0G008870 PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 9.3e-24 Identity = 62/135 (45.93%), Postives = 81/135 (60.00%), Query Frame = 0
BLAST of Lsi07G010850 vs. NCBI nr
Match: XP_038906276.1 (E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]) HSP 1 Score: 251.1 bits (640), Expect = 5.6e-63 Identity = 123/148 (83.11%), Postives = 128/148 (86.49%), Query Frame = 0
BLAST of Lsi07G010850 vs. NCBI nr
Match: KAE8649999.1 (hypothetical protein Csa_010276, partial [Cucumis sativus]) HSP 1 Score: 239.6 bits (610), Expect = 1.7e-59 Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = 0
BLAST of Lsi07G010850 vs. NCBI nr
Match: KAA0052944.1 (E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa] >TYK11400.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa]) HSP 1 Score: 239.2 bits (609), Expect = 2.2e-59 Identity = 120/151 (79.47%), Postives = 127/151 (84.11%), Query Frame = 0
BLAST of Lsi07G010850 vs. NCBI nr
Match: KAG6577791.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 232.6 bits (592), Expect = 2.0e-57 Identity = 112/145 (77.24%), Postives = 123/145 (84.83%), Query Frame = 0
BLAST of Lsi07G010850 vs. NCBI nr
Match: KAG7015830.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 231.9 bits (590), Expect = 3.5e-57 Identity = 112/145 (77.24%), Postives = 122/145 (84.14%), Query Frame = 0
BLAST of Lsi07G010850 vs. TAIR 10
Match: AT3G51325.1 (RING/U-box superfamily protein ) HSP 1 Score: 75.9 bits (185), Expect = 3.0e-14 Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 0
BLAST of Lsi07G010850 vs. TAIR 10
Match: AT4G32600.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.2 bits (147), Expect = 7.6e-10 Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Lsi07G010850 vs. TAIR 10
Match: AT1G35630.1 (Protease-associated (PA) RING/U-box zinc finger family protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08 Identity = 30/98 (30.61%), Postives = 45/98 (45.92%), Query Frame = 0
BLAST of Lsi07G010850 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08 Identity = 24/64 (37.50%), Postives = 33/64 (51.56%), Query Frame = 0
BLAST of Lsi07G010850 vs. TAIR 10
Match: AT3G55530.1 (RING/U-box superfamily protein ) HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08 Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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