Lsi07G010850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G010850
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Locationchr07: 16251991 .. 16252419 (-)
RNA-Seq ExpressionLsi07G010850
SyntenyLsi07G010850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTCAACAAGGTGTTCTTCTTCTTGATCTACAACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAGCAACCCCGCTTCCTCATAGTGGCCATTCGAGCCTCCGACCTATTACACCTGATGATTGTACTGTCGTAGCTCTTTCGAATCCCGAGAAGGCGTTTGAGGACGAGACATGTTGTGTGTGCTTGTCGAGTATGGGGAACAGGGACAATGGGGTTGGCACGAGTGTTCTTCCTTGCTTGCACGAGTTTCATAAGGTATGCGTCGATCGTTGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGAGCGTCATGAAGATGGGACTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA

mRNA sequence

ATGGTTTTCAACAAGGTGTTCTTCTTCTTGATCTACAACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAGCAACCCCGCTTCCTCATAGTGGCCATTCGAGCCTCCGACCTATTACACCTGATGATTGTACTGTCGTAGCTCTTTCGAATCCCGAGAAGGCGTTTGAGGACGAGACATGTTGTGTGTGCTTGTCGAGTATGGGGAACAGGGACAATGGGGTTGGCACGAGTGTTCTTCCTTGCTTGCACGAGTTTCATAAGGTATGCGTCGATCGTTGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGAGCGTCATGAAGATGGGACTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA

Coding sequence (CDS)

ATGGTTTTCAACAAGGTGTTCTTCTTCTTGATCTACAACAACTTCATCGGCTTCCGAAGCAAGCCGAGATTCAAACAAGCAGCAACCCCGCTTCCTCATAGTGGCCATTCGAGCCTCCGACCTATTACACCTGATGATTGTACTGTCGTAGCTCTTTCGAATCCCGAGAAGGCGTTTGAGGACGAGACATGTTGTGTGTGCTTGTCGAGTATGGGGAACAGGGACAATGGGGTTGGCACGAGTGTTCTTCCTTGCTTGCACGAGTTTCATAAGGTATGCGTCGATCGTTGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGTCGATATTCGATGGAAGGAGGAGAGCGTCATGAAGATGGGACTAATCAAATACTCACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA

Protein sequence

MVFNKVFFFLIYNNFIGFRSKPRFKQAATPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTNQILTDEMVIWFSSFHTSGF
Homology
BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: Q91XF4 (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-08
Identity = 27/86 (31.40%), Postives = 43/86 (50.00%), Query Frame = 0

Query: 42  ITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEEC 101
           +T +    +   + +K  E + C +CL      ++G    VLPC H +H  CVD W  + 
Sbjct: 208 LTKEQLKQIPTHDYQKGDEYDVCAICLDEY---EDGDKLRVLPCAHAYHSRCVDPWLTQT 267

Query: 102 RRTCPICRYSME---GGERHEDGTNQ 125
           R+TCPIC+  +    G E  E+ T +
Sbjct: 268 RKTCPICKQPVHRGPGDEEQEEETQE 290

BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: Q9H6Y7 (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-08
Identity = 25/79 (31.65%), Postives = 40/79 (50.63%), Query Frame = 0

Query: 42  ITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEEC 101
           +T +    +   + +K  + + C +CL      ++G    VLPC H +H  CVD W  + 
Sbjct: 208 LTKEQLKQIPTHDYQKGDQYDVCAICLDEY---EDGDKLRVLPCAHAYHSRCVDPWLTQT 267

Query: 102 RRTCPICRYSMEGGERHED 121
           R+TCPIC+  +  G   ED
Sbjct: 268 RKTCPICKQPVHRGPGDED 283

BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: Q5XIL0 (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.0e-08
Identity = 24/79 (30.38%), Postives = 40/79 (50.63%), Query Frame = 0

Query: 42  ITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEEC 101
           +T +    +   + +K  E + C +CL      ++G    +LPC H +H  CVD W  + 
Sbjct: 208 LTKEQLKQIPTHDYQKGDEYDVCAICLDEY---EDGDKLRILPCAHAYHSRCVDPWLTQT 267

Query: 102 RRTCPICRYSMEGGERHED 121
           R+TCPIC+  +  G   E+
Sbjct: 268 RKTCPICKQPVHRGPGDEE 283

BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: F4HZZ5 (Receptor homology region, transmembrane domain- and RING domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=RMR5 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 30/98 (30.61%), Postives = 45/98 (45.92%), Query Frame = 0

Query: 23  RFKQAATPLPHSGHS---SLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVG 82
           + +Q+   LPH G       R +     T V     E++    TC +C+      D  VG
Sbjct: 189 QIRQSVRDLPHGGQGLSCMPRDLLQSMPTEVYSGVLEESSTSVTCAICID-----DYCVG 248

Query: 83  TS--VLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGG 116
               +LPC H++H VC+D W   CR  CP+C+ +   G
Sbjct: 249 EKLRILPCKHKYHAVCIDSWLGRCRSFCPVCKQNPRTG 281

BLAST of Lsi07G010850 vs. ExPASy Swiss-Prot
Match: Q9M2S6 (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0

Query: 56  EKAFEDE-TCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEG 115
           +K  EDE TC VCL  +     G     LPCLH+FH  C+D W  + + TCP+C++    
Sbjct: 202 KKGTEDELTCSVCLEQV---TVGEIVRTLPCLHQFHAGCIDPWLRQ-QGTCPVCKFRAHS 261

Query: 116 GERHEDGTNQILTD 129
           G + +D  +   +D
Sbjct: 262 GWQEQDEIDDDASD 271

BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A0A0L4W7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 119/146 (81.51%), Postives = 127/146 (86.99%), Query Frame = 0

Query: 1   MVFNKVFFFLIYNNFIGFRSKPRFKQAATPLPHSGHSSLRPITPDDCTVVALSNPEKAFE 60
           M+FNKVFFF  YNN IGFRS+PRFKQ ATPLP SG+SSLRP+  DDCT++ALS+ EKA E
Sbjct: 1   MIFNKVFFF-FYNNLIGFRSRPRFKQ-ATPLPRSGNSSLRPLPTDDCTILALSSLEKALE 60

Query: 61  DETCCVCLSSMGNR----DNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGE 120
            ETCCVCLSSMGN     D GVGTSVLPCLHEFHKVCV+RWFEECRRTCPICRYSMEGG 
Sbjct: 61  GETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGG 120

Query: 121 RHEDGTNQILTDEMVIWFSSFHTSGF 143
            HED TNQILTDEMVIWFSSFHTSGF
Sbjct: 121 SHEDETNQILTDEMVIWFSSFHTSGF 144

BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A5D3CJ45 (E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00530 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.1e-59
Identity = 120/151 (79.47%), Postives = 127/151 (84.11%), Query Frame = 0

Query: 1   MVFNKVFFFLIYNNFIGFRSKP-RFKQAATPLPHSGHSSLRPITPDDCTVVALSNPEKAF 60
           MVFNKVFFF  YNNFIGFRS+P RFKQ ATPLPH G+SSLRP+  DDCT++ALS+ EKA 
Sbjct: 1   MVFNKVFFF-FYNNFIGFRSRPTRFKQ-ATPLPHGGNSSLRPMPTDDCTIIALSSLEKAL 60

Query: 61  EDETCCVCLSSMGNRDN------GVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSME 120
           E ETCCVCLSSMGN D       G GTSVLPCLHEFHKVCV+RWFEECRRTCPICRYSME
Sbjct: 61  EGETCCVCLSSMGNTDGDGDKGVGNGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME 120

Query: 121 --GGERHEDGTNQILTDEMVIWFSSFHTSGF 143
             GG  HED TNQILTDEMVIWFSSFHTSGF
Sbjct: 121 GGGGGSHEDETNQILTDEMVIWFSSFHTSGF 149

BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A6J1CW69 (E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC111014786 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 0

Query: 1   MVFNKVFFFLIYNNFIGFRSKPRFKQAATPLPHSGHSSLRPITPDDCTV---VALSNPEK 60
           MVFN+VFFF  + NFIGFR +P+ KQ  T LPH G S+LR +  D+  +   V LS+  K
Sbjct: 1   MVFNRVFFF--FYNFIGFRGRPKLKQ-KTLLPHGGDSTLRQMVEDESRIPDCVTLSSSGK 60

Query: 61  AFEDE-TCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEG-G 120
           A E E  CCVCLSS+   + G+ TSVLPCLHEFHKVCVDRWFEE RRTCPICRYSMEG G
Sbjct: 61  ALEGEMCCCVCLSSI---EEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGAG 120

Query: 121 ERHEDGTNQILTDEMVIWFSSFHTSGF 143
           + +E+GT QILTDEMVIWFSSFHTSGF
Sbjct: 121 QGNENGT-QILTDEMVIWFSSFHTSGF 140

BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A7N2R4T7 (RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.9e-24
Identity = 70/147 (47.62%), Postives = 88/147 (59.86%), Query Frame = 0

Query: 1   MVFNKVFFFLIYNNFIG----FRSKPRFKQAATPLPHSGHSSLRPITPDDCTVVALSNPE 60
           MVF K+  F IYN+ IG     R++P F +A         S L  ++ D+  V      E
Sbjct: 1   MVFKKLVCF-IYNHLIGNGDHLRAQPTFWEAP--------SLLHKVSLDEVEVEV--EVE 60

Query: 61  KAFEDETCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEE-CRRTCPICRYSMEGG 120
              E E CCVCLS +      + T  LPCLHEFHK+CVDRWF   CR+TCP+CR+SM G 
Sbjct: 61  VEVEGEVCCVCLSRLKKGQEEMRT--LPCLHEFHKICVDRWFNHVCRKTCPVCRFSMGGE 120

Query: 121 ERHEDGTNQILTDEMVIWFSSFHTSGF 143
           ++    T Q+LTDEMVIWFSSFH +GF
Sbjct: 121 DKFH--TQQVLTDEMVIWFSSFHVAGF 132

BLAST of Lsi07G010850 vs. ExPASy TrEMBL
Match: A0A6A1UIA7 (Protein preY, mitochondrial OS=Morella rubra OX=262757 GN=CJ030_MR0G008870 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.3e-24
Identity = 62/135 (45.93%), Postives = 81/135 (60.00%), Query Frame = 0

Query: 16  IGFRSKPRFKQAATPLPHSGHSSLR----PITPDDCTVVALSNPEKAFE----DETCCVC 75
           IG R++P  K+A    P S +S +         +D T+ A  +   + E    ++ CCVC
Sbjct: 102 IGLRAQPALKEA----PSSSYSVINWDDLDEVKEDPTMSARGSSSSSGEVHEGEQQCCVC 161

Query: 76  LSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTNQILT 135
           LS +     G  T +LPCLHEFHKVCVDRWF  CR+TCP+CR+SM G +       + LT
Sbjct: 162 LSRL---KKGQDTRILPCLHEFHKVCVDRWFNSCRKTCPVCRFSMGGEDNCR--VQEALT 221

Query: 136 DEMVIWFSSFHTSGF 143
           DEMVIWFSSFH +GF
Sbjct: 222 DEMVIWFSSFHVAGF 227

BLAST of Lsi07G010850 vs. NCBI nr
Match: XP_038906276.1 (E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida])

HSP 1 Score: 251.1 bits (640), Expect = 5.6e-63
Identity = 123/148 (83.11%), Postives = 128/148 (86.49%), Query Frame = 0

Query: 1   MVFNKVFFFLIYNNFIGFRSKPRFKQAATPLPHSGHSSLRPITPDDCTVVALSNPEKAFE 60
           MVFNKVFFF  YNNF+GFRS+ R KQ ATPLPH G+ SLRPITPDDC +V LS+PEKA E
Sbjct: 1   MVFNKVFFF-FYNNFMGFRSRLRCKQ-ATPLPHGGNLSLRPITPDDCAIVTLSSPEKALE 60

Query: 61  DETCCVCLSSMGN----RDNGVG--TSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEG 120
            ETCCVCLSSMGN    RD GVG  TSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEG
Sbjct: 61  GETCCVCLSSMGNKDGDRDKGVGTSTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEG 120

Query: 121 GERHEDGTNQILTDEMVIWFSSFHTSGF 143
           G  HEDGTNQILTDEMVIWFSSFHTSGF
Sbjct: 121 GGSHEDGTNQILTDEMVIWFSSFHTSGF 146

BLAST of Lsi07G010850 vs. NCBI nr
Match: KAE8649999.1 (hypothetical protein Csa_010276, partial [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-59
Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = 0

Query: 8   FFLIYNNFIGFRSKPRFKQAATPLPHSGHSSLRPITPDDCTVVALSNPEKAFEDETCCVC 67
           FF  YNN IGFRS+PRFKQ ATPLP SG+SSLRP+  DDCT++ALS+ EKA E ETCCVC
Sbjct: 2   FFFFYNNLIGFRSRPRFKQ-ATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGETCCVC 61

Query: 68  LSSMGNR----DNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGGERHEDGTN 127
           LSSMGN     D GVGTSVLPCLHEFHKVCV+RWFEECRRTCPICRYSMEGG  HED TN
Sbjct: 62  LSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSHEDETN 121

Query: 128 QILTDEMVIWFSSFHTSGF 143
           QILTDEMVIWFSSFHTSGF
Sbjct: 122 QILTDEMVIWFSSFHTSGF 139

BLAST of Lsi07G010850 vs. NCBI nr
Match: KAA0052944.1 (E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa] >TYK11400.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa])

HSP 1 Score: 239.2 bits (609), Expect = 2.2e-59
Identity = 120/151 (79.47%), Postives = 127/151 (84.11%), Query Frame = 0

Query: 1   MVFNKVFFFLIYNNFIGFRSKP-RFKQAATPLPHSGHSSLRPITPDDCTVVALSNPEKAF 60
           MVFNKVFFF  YNNFIGFRS+P RFKQ ATPLPH G+SSLRP+  DDCT++ALS+ EKA 
Sbjct: 1   MVFNKVFFF-FYNNFIGFRSRPTRFKQ-ATPLPHGGNSSLRPMPTDDCTIIALSSLEKAL 60

Query: 61  EDETCCVCLSSMGNRDN------GVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSME 120
           E ETCCVCLSSMGN D       G GTSVLPCLHEFHKVCV+RWFEECRRTCPICRYSME
Sbjct: 61  EGETCCVCLSSMGNTDGDGDKGVGNGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSME 120

Query: 121 --GGERHEDGTNQILTDEMVIWFSSFHTSGF 143
             GG  HED TNQILTDEMVIWFSSFHTSGF
Sbjct: 121 GGGGGSHEDETNQILTDEMVIWFSSFHTSGF 149

BLAST of Lsi07G010850 vs. NCBI nr
Match: KAG6577791.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 232.6 bits (592), Expect = 2.0e-57
Identity = 112/145 (77.24%), Postives = 123/145 (84.83%), Query Frame = 0

Query: 1   MVFNKVFFFLIYNNFIGFRSKPRFKQAATPLPHSGHSSLRPITPDDCTVVALSNPEKAFE 60
           MVFNK+FFF  YNN IGFR+ P  KQ ATPLP S  SSLRP+TPDDC V ALS+PEKA E
Sbjct: 1   MVFNKLFFF-FYNNLIGFRTSPTLKQ-ATPLPRSADSSLRPMTPDDC-VAALSSPEKALE 60

Query: 61  DETCCVCLSSMGN--RDNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSME-GGER 120
            ETCCVCLS MGN  +D G+GTSVLPC HEFHK+C+DRWFEECRRTCPICRYSME GG  
Sbjct: 61  GETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNN 120

Query: 121 HEDGTNQILTDEMVIWFSSFHTSGF 143
           HEDG+N++LTDEMVIWFSSFHTSGF
Sbjct: 121 HEDGSNEMLTDEMVIWFSSFHTSGF 142

BLAST of Lsi07G010850 vs. NCBI nr
Match: KAG7015830.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.9 bits (590), Expect = 3.5e-57
Identity = 112/145 (77.24%), Postives = 122/145 (84.14%), Query Frame = 0

Query: 1   MVFNKVFFFLIYNNFIGFRSKPRFKQAATPLPHSGHSSLRPITPDDCTVVALSNPEKAFE 60
           MVFNK+FFF  YNN IGFR+ P  KQ ATPLP S  SSLRP TPDDC V ALS+PEKA E
Sbjct: 1   MVFNKLFFF-FYNNLIGFRTSPTLKQ-ATPLPRSADSSLRPTTPDDC-VAALSSPEKALE 60

Query: 61  DETCCVCLSSMGN--RDNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSME-GGER 120
            ETCCVCLS MGN  +D G+GTSVLPC HEFHK+C+DRWFEECRRTCPICRYSME GG  
Sbjct: 61  GETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGGNN 120

Query: 121 HEDGTNQILTDEMVIWFSSFHTSGF 143
           HEDG+N++LTDEMVIWFSSFHTSGF
Sbjct: 121 HEDGSNEMLTDEMVIWFSSFHTSGF 142

BLAST of Lsi07G010850 vs. TAIR 10
Match: AT3G51325.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-14
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 0

Query: 60  EDETCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEECRR-TCPICRYSMEGGERH 119
           E+E C VCL  M  +D       LPC HEFH +CVD WF   R+  CP+CR+S       
Sbjct: 22  EEECCSVCLMRMEAKD---VIKSLPCSHEFHSLCVDTWFNVSRKICCPLCRFS------- 81

Query: 120 EDGTNQILTDEMVIWFSSFH 139
              T  +LTDE+++WFSSFH
Sbjct: 82  --PTTILLTDELLLWFSSFH 89

BLAST of Lsi07G010850 vs. TAIR 10
Match: AT4G32600.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.6e-10
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 43  TPDDCTVVALSNPEKAF--EDETCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEE 102
           T +   V A ++ E+A   ED  CC+CL+   N +       LPC H FHK CVD+W  +
Sbjct: 340 TSEGGVVAAGTDNERAISGEDAVCCICLAKYANNEE---LRELPCSHFFHKECVDKWL-K 399

Query: 103 CRRTCPICRYSMEGGERHEDGTNQ-ILT 128
              +CP+C+   E GE++ D T+Q ILT
Sbjct: 400 INASCPLCK--SEVGEKNSDLTSQGILT 421

BLAST of Lsi07G010850 vs. TAIR 10
Match: AT1G35630.1 (Protease-associated (PA) RING/U-box zinc finger family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 30/98 (30.61%), Postives = 45/98 (45.92%), Query Frame = 0

Query: 23  RFKQAATPLPHSGHS---SLRPITPDDCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVG 82
           + +Q+   LPH G       R +     T V     E++    TC +C+      D  VG
Sbjct: 189 QIRQSVRDLPHGGQGLSCMPRDLLQSMPTEVYSGVLEESSTSVTCAICID-----DYCVG 248

Query: 83  TS--VLPCLHEFHKVCVDRWFEECRRTCPICRYSMEGG 116
               +LPC H++H VC+D W   CR  CP+C+ +   G
Sbjct: 249 EKLRILPCKHKYHAVCIDSWLGRCRSFCPVCKQNPRTG 281

BLAST of Lsi07G010850 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-08
Identity = 24/64 (37.50%), Postives = 33/64 (51.56%), Query Frame = 0

Query: 46  DCTVVALSNPEKAFEDETCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEECRRTC 105
           D   + L    ++ +   C +CL      D+      LPC HEFHK CVD+W +E  R C
Sbjct: 472 DLLPIKLYTKSQSEDPSQCYICLVEYEEADS---IRTLPCHHEFHKTCVDKWLKEIHRVC 531

Query: 106 PICR 110
           P+CR
Sbjct: 532 PLCR 532

BLAST of Lsi07G010850 vs. TAIR 10
Match: AT3G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0

Query: 56  EKAFEDE-TCCVCLSSMGNRDNGVGTSVLPCLHEFHKVCVDRWFEECRRTCPICRYSMEG 115
           +K  EDE TC VCL  +     G     LPCLH+FH  C+D W  + + TCP+C++    
Sbjct: 202 KKGTEDELTCSVCLEQV---TVGEIVRTLPCLHQFHAGCIDPWLRQ-QGTCPVCKFRAHS 261

Query: 116 GERHEDGTNQILTD 129
           G + +D  +   +D
Sbjct: 262 GWQEQDEIDDDASD 271

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q91XF44.1e-0831.40E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1[more]
Q9H6Y75.3e-0831.65E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1[more]
Q5XIL09.0e-0830.38E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 ... [more]
F4HZZ51.5e-0730.61Receptor homology region, transmembrane domain- and RING domain-containing prote... [more]
Q9M2S62.6e-0736.49E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A0A0L4W73.0e-6281.51RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 P... [more]
A0A5D3CJ451.1e-5979.47E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J1CW691.5e-4266.67E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A7N2R4T71.9e-2447.62RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6A1UIA79.3e-2445.93Protein preY, mitochondrial OS=Morella rubra OX=262757 GN=CJ030_MR0G008870 PE=4 ... [more]
Match NameE-valueIdentityDescription
XP_038906276.15.6e-6383.11E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida][more]
KAE8649999.11.7e-5981.29hypothetical protein Csa_010276, partial [Cucumis sativus][more]
KAA0052944.12.2e-5979.47E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa] >TYK11400.1 E3 ubiq... [more]
KAG6577791.12.0e-5777.24Protein goliath, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7015830.13.5e-5777.24Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
AT3G51325.13.0e-1446.25RING/U-box superfamily protein [more]
AT4G32600.17.6e-1039.77RING/U-box superfamily protein [more]
AT1G35630.11.1e-0830.61Protease-associated (PA) RING/U-box zinc finger family protein [more]
AT5G45290.11.1e-0837.50RING/U-box superfamily protein [more]
AT3G55530.11.9e-0836.49RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 64..108
e-value: 6.3E-6
score: 35.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 63..109
e-value: 1.3E-9
score: 38.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 64..109
score: 12.002429
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 49..125
e-value: 6.8E-15
score: 56.0
NoneNo IPR availablePANTHERPTHR45977TARGET OF ERK KINASE MPK-1coord: 46..117
NoneNo IPR availablePANTHERPTHR45977:SF13GB|AAF27103.1coord: 46..117
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 52..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G010850.1Lsi07G010850.1mRNA