Lsi07G010730 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G010730
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ganglioside-induced differentiation-associated protein 2
Location	chr07: 16079869 .. 16082512 (-)
RNA-Seq Expression	Lsi07G010730
Synteny	Lsi07G010730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAAAAAAAAAAAAGTGATTTAAAGCAATAAATTATTAGGGGTGAGAGAGGTTGGATCTGGGGAGGGAAAGATGCCACGGAATATTCCCGTGTGACAAAAATCTTTGCCCCCACATCCGCCCCATTCTCCTCCTCCGCCCAATCATCTCTTTTCCATTTTTTTTTTCATTTTATTTTTCAAATCTCATCGTCAAATTTCATCCTCCGCCAAATCCCTTCCGTCCATCCTTATCCATATCCATACTCCCTTCATATTTTGCCCTAGCTATGCTCTCTCTGATTCAGTGATTCTCATCCCCCACTCGCTTTTCCGACTTCTTCCACTATGGCCGCTCACCTTCCGCCGGAGCAAAACCACCTCGAAAAATTCGACGTCTTCAAGATCAAAGGCAGAGACAAACAAGGCCGCCGCATTCTACGCATCACCGGAAAATTCTTTCCAGGTTTCCTCTCTTTCTCTCTCATTCTTTTTGCTATTGAGTTTGAATGTGCTCAAGAAACATCTGTATATTTATCTTACTATGTTCTGATCTGATACTGTTTCTTGCTCTTTTCGTCGCGATGAAATTTATTTTCTATCGTCATCATCCTCGGCGCGGGCTGTGAATTTAAATTCGCTCAAGTAGCATCAGAATATTTAGCCCTAATCTGCTATGATTCAATTTTCTTGCTCTGCTCTGCTTTGATTTACTTGTTCTTTTTTATCAATTTGAATTTTCGTAGAGAAGTATGCTCTGATTCTGTTTTCTTGCTCTTTTCGATCGAATTGAATTTTCGTCGGGAAGCATCTGTGAATTAGCGTTACTATGCACTGGTTATATTTTAATTTCTTGCTATTTTCATGAGAGGAATTGAAATTGAGTTTGGACTGTGCTTAAGAAGTATCTGCATATTTGAACTGGCTGCTATGCTTCGATTCTAATTTCTTGCGGTTTTAAGCGATGAGATTGAATTTTCTGTTATCTGTTTTGAAAATCAGCGCGGATTGTGAGTTTAGATGTGCTGAAAAAGCATCTGGAGGAGAAGATCTTCCCTAGGCTTAAGAACAAGCGTTTTACGATCTTGTACTTTCATACCGGTGTTCAAAGGAGCCAAAATTTTCCCGGAATCGCCGCCCTCCGGTCAATCTACGACGCAATTCCGGCCGCCGTCAAGGCTAATCTCGAAGCCGTGTATTTCGTTCACCCAGACCTCCAGGCCAGACTCTTCCTCGCCACTCTCGGCCGCATTTTCTTCACCAGCGAGTACTTTTTTCTAACCTTTCTCCTTTAATCAATTTCACTTTTCCCTATATTCTTCTTCTCAATATTCTTGAATATAGTAATAATTTTATATTCTTTTCAACATATAAAATACTGTAACCAAATTTGGTACAAGAATTTTAGAGAAAATTAGAATTTAGCTCAAAACCTTCCTATATTATTATGGTGATTTTATCAAACCTTTATAAAGTTGAAGATGTATTAAATACTTTTAAGGTTACTAAAATGTATTAAACTAAAATATAACTTAAAAAATTTAGGAACTAAATTTATAATTGAATTCTTTACTTTTAAGACGTAACGTTATGTATCAATTAAAAAGGTTAAAACATTAATAAACTGATAAGGATAGAAAAAGAAAAGATGGGAATAACAATTGATGAGATTAGTAATATTAATTTTGTGGTTAATGAGGGGGGAATGTTCGAATGTGGTAGGGTATATGGAAAGGTGAGGTACGTGAGTAGAATTGATCTGCTGTGGGAGCATGTACGGAGGAACGAGATCGAGGTTCCAGAATTCATATATGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGCCTTGAGAGTGATCATCCTAGGGTCTACGGTGCACCCTCAGTCGAATCGCACGTGTACTCCATGAGGTGTATTTCATAAAATCCTTTTTTTTTTTTCCCTGAAAAGGCCTTGTTTAAGTGGGTTTGAGTTTGGATCTTGTTTAGCCTACTAATTCTTTTTTCGTTTTGGACCCCAACACCAAGAAGTGCTTGTATATACTTGTTTTATGCTTCTTTCTTTTTTCTTTTTCTTTTTTTTTTGGGGAAAAAAACTGGTTGTATAAAACAAAGCTATTAGTATGCGTAACTGTATATATGCCTTTTAATGATTGATAGTTTTAATATTCAGTTTTAGATTTTTTTTTTTTACCAGCCAATTTTAGCATTTACACACGTTATTGATTAAAAAAAAACATCTACACAGTTATATGTGTCTATAAGTCTTATAATCCTATAATGTGTTTGGTTTAACGTTCTACGTATTTAATTTTTTAAAAAAATTATATTATTTAGCTATTTTTAATTATTCAAAATAGCTTTCGAAACACTTTCAAATTTTATTTTAAACAATTTTTATTAAAAGAGTTTAAGTAAAAATAATTTTTTTAAATATATATATGTTTTTTACTCACATTGTTTAACTAAAAAACAAAAAGTATTCTATGAGAGTTTACTTCCAAAAAAAAAAAAAAAAACATACACTCCTGCTTTTTAGTATGCAGCTCATGGAAGCTTCTTTAGACCAACAATGGCATAGAATAAATAACTCCTGGTTTATAACACTCATCAACAAACTGACTGGGGAAATCAAAAATCCAAAAGACAC

mRNA sequence

AAAAAAGAAAAAAAAAAAAGTGATTTAAAGCAATAAATTATTAGGGGTGAGAGAGGTTGGATCTGGGGAGGGAAAGATGCCACGGAATATTCCCGTGTGACAAAAATCTTTGCCCCCACATCCGCCCCATTCTCCTCCTCCGCCCAATCATCTCTTTTCCATTTTTTTTTTCATTTTATTTTTCAAATCTCATCGTCAAATTTCATCCTCCGCCAAATCCCTTCCGTCCATCCTTATCCATATCCATACTCCCTTCATATTTTGCCCTAGCTATGCTCTCTCTGATTCAGTGATTCTCATCCCCCACTCGCTTTTCCGACTTCTTCCACTATGGCCGCTCACCTTCCGCCGGAGCAAAACCACCTCGAAAAATTCGACGTCTTCAAGATCAAAGGCAGAGACAAACAAGGCCGCCGCATTCTACGCATCACCGGAAAATTCTTTCCAGCGCGGATTGTGAGTTTAGATGTGCTGAAAAAGCATCTGGAGGAGAAGATCTTCCCTAGGCTTAAGAACAAGCGTTTTACGATCTTGTACTTTCATACCGGTGTTCAAAGGAGCCAAAATTTTCCCGGAATCGCCGCCCTCCGGTCAATCTACGACGCAATTCCGGCCGCCGTCAAGGCTAATCTCGAAGCCGTGTATTTCGTTCACCCAGACCTCCAGGCCAGACTCTTCCTCGCCACTCTCGGCCGCATTTTCTTCACCAGCGAGGTATATGGAAAGGTGAGGTACGTGAGTAGAATTGATCTGCTGTGGGAGCATGTACGGAGGAACGAGATCGAGGTTCCAGAATTCATATATGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGCCTTGAGAGTGATCATCCTAGGGTCTACGGTGCACCCTCAGTCGAATCGCACGTGTACTCCATGAGGTGTATTTCATAAAATCCTTTTTTTTTTTTCCCTGAAAAGGCCTTGTTTAAGTGGGTTTGAGTTTGGATCTTGTTTAGCCTACTAATTCTTTTTTCGTTTTGGACCCCAACACCAAGAAGTGCTTGTATATACTTGTTTTATGCTTCTTTCTTTTTTCTTTTTCTTTTTTTTTTGGGGAAAAAAACTGGTTGTATAAAACAAAGCTATTAGTATGCGTAACTGTATATATGCCTTTTAATGATTGATAGTTTTAATATTCAGTTTTAGATTTTTTTTTTTTACCAGCCAATTTTAGCATTTACACACGTTATTGATTAAAAAAAAACATCTACACAGTTATATGTGTCTATAAGTCTTATAATCCTATAATGTGTTTGGTTTAACGTTCTACGTATTTAATTTTTTAAAAAAATTATATTATTTAGCTATTTTTAATTATTCAAAATAGCTTTCGAAACACTTTCAAATTTTATTTTAAACAATTTTTATTAAAAGAGTTTAAGTAAAAATAATTTTTTTAAATATATATATGTTTTTTACTCACATTGTTTAACTAAAAAACAAAAAGTATTCTATGAGAGTTTACTTCCAAAAAAAAAAAAAAAAACATACACTCCTGCTTTTTAGTATGCAGCTCATGGAAGCTTCTTTAGACCAACAATGGCATAGAATAAATAACTCCTGGTTTATAACACTCATCAACAAACTGACTGGGGAAATCAAAAATCCAAAAGACAC

Coding sequence (CDS)

ATGGCCGCTCACCTTCCGCCGGAGCAAAACCACCTCGAAAAATTCGACGTCTTCAAGATCAAAGGCAGAGACAAACAAGGCCGCCGCATTCTACGCATCACCGGAAAATTCTTTCCAGCGCGGATTGTGAGTTTAGATGTGCTGAAAAAGCATCTGGAGGAGAAGATCTTCCCTAGGCTTAAGAACAAGCGTTTTACGATCTTGTACTTTCATACCGGTGTTCAAAGGAGCCAAAATTTTCCCGGAATCGCCGCCCTCCGGTCAATCTACGACGCAATTCCGGCCGCCGTCAAGGCTAATCTCGAAGCCGTGTATTTCGTTCACCCAGACCTCCAGGCCAGACTCTTCCTCGCCACTCTCGGCCGCATTTTCTTCACCAGCGAGGTATATGGAAAGGTGAGGTACGTGAGTAGAATTGATCTGCTGTGGGAGCATGTACGGAGGAACGAGATCGAGGTTCCAGAATTCATATATGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGCCTTGAGAGTGATCATCCTAGGGTCTACGGTGCACCCTCAGTCGAATCGCACGTGTACTCCATGAGGTGTATTTCATAA

Protein sequence

MAAHLPPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAPSVESHVYSMRCIS

Homology

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BLAST of Lsi07G010730 vs. ExPASy Swiss-Prot
Match: Q7JUR6 (Protein GDAP2 homolog OS=Drosophila melanogaster OX=7227 GN=Gdap2 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 40/140 (28.57%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 22  GRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRFTILYFHTGVQRSQNFP 81
           G D+ GR ++   GK+FPA+ + L+    +L + + P +K   + I YFHT +  + N+P
Sbjct: 388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVKGD-YVISYFHT-LTSTNNYP 447

Query: 82  GIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFFTSEVYGKVRYVSRIDL 141
            +  LR +Y  +P   K NL+A Y VHP    ++ +      F    +  KV  +  ++ 
Sbjct: 448 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKM-MTWWFTTFMAPAIKAKVHSLPGVEH 507

Query: 142 LWEHVRRNEIEVPEFIYDHD 162
           L+  + ++++E+P +I ++D
Sbjct: 508 LYSAITKDQLEIPAYITEYD 524

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BLAST of Lsi07G010730 vs. ExPASy Swiss-Prot
Match: Q292F9 (Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA15091 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 40/140 (28.57%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 22  GRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRFTILYFHTGVQRSQNFP 81
           G D+ GR ++   GK+FPA+ + L+    +L + + P +K   + I YFHT +  + N+P
Sbjct: 390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDPIVKGD-YVISYFHT-LTSTNNYP 449

Query: 82  GIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFFTSEVYGKVRYVSRIDL 141
            +  LR +Y  +P   K NL+A Y VHP    ++ +      F    +  KV  +  ++ 
Sbjct: 450 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKM-MTWWFTTFMAPAIKAKVHSLPGVEH 509

Query: 142 LWEHVRRNEIEVPEFIYDHD 162
           L+  + ++++E+P +I ++D
Sbjct: 510 LYSAITKDQLEIPAYITEYD 526

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BLAST of Lsi07G010730 vs. ExPASy Swiss-Prot
Match: A7T167 (Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.0e-09
Identity = 35/140 (25.00%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 22  GRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRFTILYFHTGVQRSQNFP 81
           G D  GR ++    + F A+   L     +    +  R+ N+ + ++YFHT     +N P
Sbjct: 346 GVDFLGRPVVVFVARHFTAQNTDLGKAVAYF-ISVLDRIVNRDYVVVYFHTH-STEENQP 405

Query: 82  GIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFFTSEVYGKVRYVSRIDL 141
            ++ L+ +Y  +    + NL+A Y VHP + AR+ +      F  S V  KV ++S +  
Sbjct: 406 PMSFLKELYHIVDNKYRRNLKAFYIVHPTVWARI-VTWFFTTFTASSVKEKVHFLSGVQY 465

Query: 142 LWEHVRRNEIEVPEFIYDHD 162
           L++ +  +++++P ++ ++D
Sbjct: 466 LYDWINPDQLDIPAYVLEYD 482

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BLAST of Lsi07G010730 vs. ExPASy Swiss-Prot
Match: Q0IHU9 (Protein prune homolog 2 OS=Xenopus tropicalis OX=8364 GN=Prune2 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.4e-05
Identity = 30/100 (30.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 65  FTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIF 124
           + ++Y + G    +  PG+  ++  Y  I   ++ NL++   VHP    R  LA L R F
Sbjct: 187 YMVVYLN-GATPRRKMPGLGWMKKCYQMIDRRLRKNLKSFIIVHPSWFIRTILA-LTRPF 246

Query: 125 FTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDL 165
            +S+   K++YVS +  L E +    + +PE I   DE+L
Sbjct: 247 ISSKFSSKIKYVSTLAELSELIPMEYVHIPETIVKLDEEL 284

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BLAST of Lsi07G010730 vs. ExPASy TrEMBL
Match: A0A0A0L0Z7 (CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002450 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.6e-106
Identity = 195/201 (97.01%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MAAHL---PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIF 60
           MAAHL   PPEQN+LEK DVFKIKGRDKQGRRILRITGKFFPAR+VSLDVLKKHLEEKIF
Sbjct: 1   MAAHLPPPPPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSVESHVYSMRCIS 199
           HPRVYGAPSVESHVYSMRCIS
Sbjct: 181 HPRVYGAPSVESHVYSMRCIS 201

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BLAST of Lsi07G010730 vs. ExPASy TrEMBL
Match: A0A1S3BJ81 (ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103490659 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.6e-104
Identity = 189/193 (97.93%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 6   PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF 65
           PPEQN+LEK DVFKIKGRDKQGRRILRITGKFFPAR+VSLDVLKKHLEEKIFPRLKNKRF
Sbjct: 9   PPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIFPRLKNKRF 68

Query: 66  TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 125
           TILYFH+GVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF
Sbjct: 69  TILYFHSGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 128

Query: 126 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 185
           TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP
Sbjct: 129 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 188

Query: 186 SVESHVYSMRCIS 199
           SVESHVYSMRCIS
Sbjct: 189 SVESHVYSMRCIS 201

[Close]

BLAST of Lsi07G010730 vs. ExPASy TrEMBL
Match: A0A6J1L134 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111500201 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.0e-100
Identity = 181/193 (93.78%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 6   PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF 65
           PPEQN LE  DVFKIKGRDKQGRRILRITGKFFPARIVSLDV+KKHLEEKIFPRLKNKRF
Sbjct: 9   PPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRF 68

Query: 66  TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 125
           TILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFLATLGRIFF
Sbjct: 69  TILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFF 128

Query: 126 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 185
           TSE+YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP
Sbjct: 129 TSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 188

Query: 186 SVESHVYSMRCIS 199
           S++SHVYSMRCIS
Sbjct: 189 SIDSHVYSMRCIS 201

[Close]

BLAST of Lsi07G010730 vs. ExPASy TrEMBL
Match: A0A6J1E710 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111431194 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.0e-100
Identity = 181/193 (93.78%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 6   PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF 65
           PPEQN LE  DVFKIKGRDKQGRRILRITGKFFPARIVSLDV+KKHLEEKIFPRLKNKRF
Sbjct: 9   PPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRF 68

Query: 66  TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 125
           TILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFLATLGRIFF
Sbjct: 69  TILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFF 128

Query: 126 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 185
           TSE+YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP
Sbjct: 129 TSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 188

Query: 186 SVESHVYSMRCIS 199
           S++SHVYSMRCIS
Sbjct: 189 SIDSHVYSMRCIS 201

[Close]

BLAST of Lsi07G010730 vs. ExPASy TrEMBL
Match: A0A6J1I6H6 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111470075 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.5e-99
Identity = 182/193 (94.30%), Postives = 185/193 (95.85%), Query Frame = 0


Query: 6   PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF 65
           PPEQN LEKFDVFKIKGRDKQ RRILRI GKFFPAR VSLDV+K HLEEKIFPRLKNKRF
Sbjct: 9   PPEQNQLEKFDVFKIKGRDKQCRRILRIVGKFFPARTVSLDVVKNHLEEKIFPRLKNKRF 68

Query: 66  TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 125
           TILYFHT VQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQAR+FLATLGRIFF
Sbjct: 69  TILYFHTSVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARVFLATLGRIFF 128

Query: 126 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 185
           TSEVYGKVRYVSRI LLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYG ESDHPRVYGAP
Sbjct: 129 TSEVYGKVRYVSRIGLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGQESDHPRVYGAP 188

Query: 186 SVESHVYSMRCIS 199
           S+ESHVYSMRCIS
Sbjct: 189 SMESHVYSMRCIS 201

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BLAST of Lsi07G010730 vs. NCBI nr
Match: XP_004146166.1 (ganglioside-induced differentiation-associated protein 2 [Cucumis sativus] >KGN55625.1 hypothetical protein Csa_010698 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 7.4e-106
Identity = 195/201 (97.01%), Postives = 197/201 (98.01%), Query Frame = 0


Query: 1   MAAHL---PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIF 60
           MAAHL   PPEQN+LEK DVFKIKGRDKQGRRILRITGKFFPAR+VSLDVLKKHLEEKIF
Sbjct: 1   MAAHLPPPPPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIF 60

Query: 61  PRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120
           PRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL
Sbjct: 61  PRLKNKRFTILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFL 120

Query: 121 ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180
           ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD
Sbjct: 121 ATLGRIFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 180

Query: 181 HPRVYGAPSVESHVYSMRCIS 199
           HPRVYGAPSVESHVYSMRCIS
Sbjct: 181 HPRVYGAPSVESHVYSMRCIS 201

[Close]

BLAST of Lsi07G010730 vs. NCBI nr
Match: XP_038905989.1 (ganglioside-induced differentiation-associated protein 2 [Benincasa hispida])

HSP 1 Score: 391.0 bits (1003), Expect = 6.3e-105
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 6   PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF 65
           PP+QNHLEK DVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF
Sbjct: 12  PPDQNHLEKLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF 71

Query: 66  TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 125
           TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF
Sbjct: 72  TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 131

Query: 126 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 185
           TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP
Sbjct: 132 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 191

Query: 186 SVESHVYSMRCIS 199
           SVESHVYSMRCIS
Sbjct: 192 SVESHVYSMRCIS 204

[Close]

BLAST of Lsi07G010730 vs. NCBI nr
Match: XP_008448498.1 (PREDICTED: ganglioside-induced differentiation-associated protein 2 [Cucumis melo])

HSP 1 Score: 387.9 bits (995), Expect = 5.3e-104
Identity = 189/193 (97.93%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 6   PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF 65
           PPEQN+LEK DVFKIKGRDKQGRRILRITGKFFPAR+VSLDVLKKHLEEKIFPRLKNKRF
Sbjct: 9   PPEQNYLEKLDVFKIKGRDKQGRRILRITGKFFPARVVSLDVLKKHLEEKIFPRLKNKRF 68

Query: 66  TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 125
           TILYFH+GVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF
Sbjct: 69  TILYFHSGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 128

Query: 126 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 185
           TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP
Sbjct: 129 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 188

Query: 186 SVESHVYSMRCIS 199
           SVESHVYSMRCIS
Sbjct: 189 SVESHVYSMRCIS 201

[Close]

BLAST of Lsi07G010730 vs. NCBI nr
Match: XP_022923521.1 (ganglioside-induced differentiation-associated protein 2-like [Cucurbita moschata] >XP_023007626.1 ganglioside-induced differentiation-associated protein 2-like [Cucurbita maxima] >KAG6577807.1 Protein GDAP2-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015847.1 Protein GDAP2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 375.9 bits (964), Expect = 2.1e-100
Identity = 181/193 (93.78%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 6   PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF 65
           PPEQN LE  DVFKIKGRDKQGRRILRITGKFFPARIVSLDV+KKHLEEKIFPRLKNKRF
Sbjct: 9   PPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKIFPRLKNKRF 68

Query: 66  TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 125
           TILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFLATLGRIFF
Sbjct: 69  TILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFF 128

Query: 126 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 185
           TSE+YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP
Sbjct: 129 TSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 188

Query: 186 SVESHVYSMRCIS 199
           S++SHVYSMRCIS
Sbjct: 189 SIDSHVYSMRCIS 201

[Close]

BLAST of Lsi07G010730 vs. NCBI nr
Match: XP_023553442.1 (ganglioside-induced differentiation-associated protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373.6 bits (958), Expect = 1.0e-99
Identity = 180/193 (93.26%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 6   PPEQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRF 65
           PPEQN LE  DVFKIKGRDKQGRRILRITGKFFPARIVSLDV+KKHLEEKI PRLKNKRF
Sbjct: 9   PPEQNQLENLDVFKIKGRDKQGRRILRITGKFFPARIVSLDVVKKHLEEKILPRLKNKRF 68

Query: 66  TILYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFF 125
           TILYFHT VQRSQNFPGIAALRSIY+AIPA VKANLEAVYFVHPDLQARLFLATLGRIFF
Sbjct: 69  TILYFHTDVQRSQNFPGIAALRSIYEAIPATVKANLEAVYFVHPDLQARLFLATLGRIFF 128

Query: 126 TSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 185
           TSE+YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP
Sbjct: 129 TSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAP 188

Query: 186 SVESHVYSMRCIS 199
           S++SHVYSMRCIS
Sbjct: 189 SIDSHVYSMRCIS 201

[Close]

BLAST of Lsi07G010730 vs. TAIR 10
Match: AT4G35750.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )

HSP 1 Score: 285.8 bits (730), Expect = 2.6e-77
Identity = 134/193 (69.43%), Postives = 163/193 (84.46%), Query Frame = 0


Query: 8   EQNHLEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRFTI 67
           ++  +EK ++FKI GRDK+GR+ILRI GKFFPAR +SLDVLKK+LEEKIFPRL  K F +
Sbjct: 10  QEQLIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIFPRLGRKPFAV 69

Query: 68  LYFHTGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFFTS 127
           LY HTGVQRS+NFPGI+ALR+IYDAIP  V+ NL+ VYF+HP LQ+RLFLAT GR  F+ 
Sbjct: 70  LYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFLATCGRFLFSG 129

Query: 128 EVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAPSV 187
            +YGK+RY+SR+D LWEHVRRNEIE+PEF+YDHD+DLEYRPMMDYG ESDH RV+   +V
Sbjct: 130 GLYGKLRYISRVDYLWEHVRRNEIEMPEFVYDHDDDLEYRPMMDYGQESDHARVFAGAAV 189

Query: 188 ESHV--YSMRCIS 199
           +S V  +SMRCIS
Sbjct: 190 DSSVSSFSMRCIS 202

[Close]

BLAST of Lsi07G010730 vs. TAIR 10
Match: AT3G10210.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-42
Identity = 74/166 (44.58%), Postives = 115/166 (69.28%), Query Frame = 0


Query: 12  LEKFDVFKIKGRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRFTILYFH 71
           L+    F ++G D+ G RI RI GK+FPAR+VS + LKK++ +KI  +       ++Y H
Sbjct: 49  LDLLQFFTLQGLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVYMH 108

Query: 72  TGVQRSQNFPGIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFFTSEVYG 131
           + VQ+  N PGI  LR IY+ +P+ +K  L+ VYF+HP L++RL +ATLGR+  +  +Y 
Sbjct: 109 STVQKDDNSPGITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLSGGLYW 168

Query: 132 KVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 178
           K++YVSR+  LWE +++ E+E+P+F+ +HD  LE+RP+ DYG+E D
Sbjct: 169 KIKYVSRLQYLWEDIKKGEVEIPDFVKNHDNVLEHRPLTDYGIEPD 214

[Close]

BLAST of Lsi07G010730 vs. TAIR 10
Match: AT1G69340.1 (appr-1-p processing enzyme family protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-10
Identity = 35/140 (25.00%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 22  GRDKQGRRILRITGKFFPARIVSLDVLKKHLEEKIFPRLKNKRFTILYFHTGVQRSQNFP 81
           G D +G  ++ + G  F  R + L+    ++ ++  P ++ K ++I+YFH+     Q  P
Sbjct: 404 GVDTEGHPVMVVVGAHFLLRCLDLERFVLYVIKEFEPVIQ-KPYSIVYFHSAAS-LQVQP 463

Query: 82  GIAALRSIYDAIPAAVKANLEAVYFVHPDLQARLFLATLGRIFFTSEVYGKVRYVSRIDL 141
            +  ++ +   +    + NL+A+Y +HP    +  + T+ + F  + V+ KV Y  R+  
Sbjct: 464 DLGWMKRLEQILGRKHQRNLQAIYVLHPTFHLKATILTM-QFFVDNVVWKKVVYADRLLQ 523

Query: 142 LWEHVRRNEIEVPEFIYDHD 162
           L+++V R ++ +P+F++ HD
Sbjct: 524 LFKYVPREQLTIPDFVFQHD 540

The following BLAST results are available for this feature:

BLAST of Lsi07G010730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7JUR6	1.3e-12	28.57	Protein GDAP2 homolog OS=Drosophila melanogaster OX=7227 GN=Gdap2 PE=2 SV=1	[more]
Q292F9	1.3e-12	28.57	Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA15...	[more]
A7T167	3.0e-09	25.00	Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1	[more]
Q0IHU9	3.4e-05	30.00	Protein prune homolog 2 OS=Xenopus tropicalis OX=8364 GN=Prune2 PE=2 SV=1	[more]

BLAST of Lsi07G010730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Z7	3.6e-106	97.01	CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002450 P...	[more]
A0A1S3BJ81	2.6e-104	97.93	ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo OX=3656...	[more]
A0A6J1L134	1.0e-100	93.78	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxim...	[more]
A0A6J1E710	1.0e-100	93.78	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita mosch...	[more]
A0A6J1I6H6	2.5e-99	94.30	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxim...	[more]

BLAST of Lsi07G010730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146166.1	7.4e-106	97.01	ganglioside-induced differentiation-associated protein 2 [Cucumis sativus] >KGN5...	[more]
XP_038905989.1	6.3e-105	98.96	ganglioside-induced differentiation-associated protein 2 [Benincasa hispida]	[more]
XP_008448498.1	5.3e-104	97.93	PREDICTED: ganglioside-induced differentiation-associated protein 2 [Cucumis mel...	[more]
XP_022923521.1	2.1e-100	93.78	ganglioside-induced differentiation-associated protein 2-like [Cucurbita moschat...	[more]
XP_023553442.1	1.0e-99	93.26	ganglioside-induced differentiation-associated protein 2-like [Cucurbita pepo su...	[more]

BLAST of Lsi07G010730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35750.1	2.6e-77	69.43	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein...	[more]
AT3G10210.1	1.2e-42	44.58	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein...	[more]
AT1G69340.1	1.3e-10	25.00	appr-1-p processing enzyme family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001251	CRAL-TRIO lipid binding domain	SMART	SM00516	sec14_4	coord: 11..160 e-value: 5.8E-14 score: 62.4
IPR001251	CRAL-TRIO lipid binding domain	PFAM	PF13716	CRAL_TRIO_2	coord: 27..163 e-value: 1.5E-29 score: 103.0
IPR001251	CRAL-TRIO lipid binding domain	CDD	cd00170	SEC14	coord: 22..154 e-value: 8.06054E-12 score: 58.9358
IPR036865	CRAL-TRIO lipid binding domain superfamily	GENE3D	3.40.525.10		coord: 2..165 e-value: 5.6E-26 score: 92.9
IPR036865	CRAL-TRIO lipid binding domain superfamily	SUPERFAMILY	52087	CRAL/TRIO domain	coord: 14..151
None	No IPR available	PANTHER	PTHR11106	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED	coord: 8..198
None	No IPR available	PANTHER	PTHR11106:SF103	OS04G0561200 PROTEIN	coord: 8..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G010730.1	Lsi07G010730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane