Lsi07G010540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G010540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
Location	chr07: 15921358 .. 15922356 (-)
RNA-Seq Expression	Lsi07G010540
Synteny	Lsi07G010540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGTTACTCCACGAATTAGGCTGGGCCTTGGGTTTTGGGCCTTCGATTTTGAGACCTTCTGCTGAAGCCCATTTGTTGATGTTCGGAGCCCAATTTCGATCCCAACTTCTTCCTGAATAACCTCCGTCGTATTGCGACGACGAACGGAGTTTTTTGGTTTGATTAATTCACTGTGGTGGCAGAAAAATCCTCCGGAAATGGAAGCGGAAGGAATCGTACAGCATCGAAGCTCGATTGCCGCTCCATTCATTTTTTTGATCGTTATCGGTTTTCAGTTTCTCGCTAGATGGCTGGAGCACCTGAAGAAGGTTCGCTTTTTCGCTTGATTTTCTTTTTTCCGTCGGAATTCTTTTCGTGTTTGTATTTTTATCATTCTGCTTGCTTTTCAACCCTAGACTTGTTATTAATAGTTGAATTTTGAGGTATACCTCAAATTCTGGGCTGTAGCGCGTTTCAGTTTTTTCGTTGACAGACTTGAGAATGCAATATGTCCAACTGTGCTTCGTGAAGTTTACGATATTGGATTGAACACATTGTGATTTGATTAGTTTAGCGACGTGATGGATTCAATGTGGAGATCTATTGACATTTTCAGTCTTAATATATAAGAATTTGCTATATTGTAATTGTTATCCGTTCAATCTTGTCAACTTGTTTGTTTTGACAATCGTGTTTCGATCATGCATGTACTTTTCAGGGAGGTTCCAACAGCCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAGTAAGTAGTATTTTTCAGCTCGATTCAGCATTAGACAGGGCCTAATTCGGCTCAAATCACTCATTCAGTAAGATTGTTTGTAACCGTTATGACTGCCATGGGGGTCATATTTATTTGATTTTATGTTCGTGTAGACCATCTACATTTGCACAGGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAGGAGCTGGCAAATTGTGAGGCTAATTAA

mRNA sequence

GTTTTGTTACTCCACGAATTAGGCTGGGCCTTGGGTTTTGGGCCTTCGATTTTGAGACCTTCTGCTGAAGCCCATTTGTTGATGTTCGGAGCCCAATTTCGATCCCAACTTCTTCCTGAATAACCTCCGTCGTATTGCGACGACGAACGGAGTTTTTTGGTTTGATTAATTCACTGTGGTGGCAGAAAAATCCTCCGGAAATGGAAGCGGAAGGAATCGTACAGCATCGAAGCTCGATTGCCGCTCCATTCATTTTTTTGATCGTTATCGGTTTTCAGTTTCTCGCTAGATGGCTGGAGCACCTGAAGAAGGGAGGTTCCAACAGCCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAGGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAGGAGCTGGCAAATTGTGAGGCTAATTAA

Coding sequence (CDS)

ATGGAAGCGGAAGGAATCGTACAGCATCGAAGCTCGATTGCCGCTCCATTCATTTTTTTGATCGTTATCGGTTTTCAGTTTCTCGCTAGATGGCTGGAGCACCTGAAGAAGGGAGGTTCCAACAGCCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAGGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAGGAGCTGGCAAATTGTGAGGCTAATTAA

Protein sequence

MEAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELANCEAN

Homology

[Close]

BLAST of Lsi07G010540 vs. ExPASy Swiss-Prot
Match: Q1H5D2 (Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-21
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 1  MEAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAS 60
          ME E +++ R  +AAP  F++V+ FQ L++WL+ LKK GS +  E ELR  IKQLLREAS
Sbjct: 1  MEGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREAS 60

Query: 61 TLSQPSTFAQAAKLRRLAAAKEKELA 87
           LSQP+TFAQAAKLRR AA KEKELA
Sbjct: 61 ALSQPATFAQAAKLRRSAATKEKELA 86

[Close]

BLAST of Lsi07G010540 vs. ExPASy TrEMBL
Match: A0A1S3BKE1 (uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MEAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAS 60
          MEAEGIV+H SSIAAPFIF IVIGFQFLARWLEHLKKGGSNSQVE+ELRKSIKQLLREAS
Sbjct: 3  MEAEGIVEHGSSIAAPFIFFIVIGFQFLARWLEHLKKGGSNSQVELELRKSIKQLLREAS 62

Query: 61 TLSQPSTFAQAAKLRRLAAAKEKELAN 88
          TLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 63 TLSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]

BLAST of Lsi07G010540 vs. ExPASy TrEMBL
Match: A0A6J1L884 (uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.7e-34
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 2  EAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 61
          EAEGIV+HRSSIAAP IFLIVI FQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST
Sbjct: 6  EAEGIVEHRSSIAAPCIFLIVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 65

Query: 62 LSQPSTFAQAAKLRRLAAAKEKELAN 88
          LSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 66 LSQPSTFAQAAKLRRLAAAKEKELAN 91

[Close]

BLAST of Lsi07G010540 vs. ExPASy TrEMBL
Match: A0A6J1E9M6 (uncharacterized protein LOC111431128 OS=Cucurbita moschata OX=3662 GN=LOC111431128 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.2e-34
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 2  EAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 61
          EAEGIV+HRSSIAAP IFL+VI FQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST
Sbjct: 4  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 63

Query: 62 LSQPSTFAQAAKLRRLAAAKEKELAN 88
          LSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 64 LSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]

BLAST of Lsi07G010540 vs. ExPASy TrEMBL
Match: A0A0A0L4T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.9e-34
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MEAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAS 60
          ME EGIV+HRSSIAAPFIF IVIGFQFLA+WLEHLKK GSNSQVEMELRKSIKQLL+EAS
Sbjct: 1  MEPEGIVEHRSSIAAPFIFFIVIGFQFLAKWLEHLKKRGSNSQVEMELRKSIKQLLKEAS 60

Query: 61 TLSQPSTFAQAAKLRRLAAAKEKELAN 88
          TLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 61 TLSQPSTFAQAAKLRRLAAAKEKELAN 87

[Close]

BLAST of Lsi07G010540 vs. ExPASy TrEMBL
Match: A0A6J1I7A9 (uncharacterized protein LOC111470261 OS=Cucurbita maxima OX=3661 GN=LOC111470261 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.6e-31
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MEAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAS 60
          MEAE IV+HR+SI AP IFLIVI FQFLA WL+HLKK GSN+QVEMELRKSIKQLLREAS
Sbjct: 1  MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREAS 60

Query: 61 TLSQPSTFAQAAKLRRLAAAKEKELAN 88
          TLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 61 TLSQPSTFAQAAKLRRLAAAKEKELAN 87

[Close]

BLAST of Lsi07G010540 vs. NCBI nr
Match: XP_008448478.1 (PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 9.1e-35
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MEAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAS 60
          MEAEGIV+H SSIAAPFIF IVIGFQFLARWLEHLKKGGSNSQVE+ELRKSIKQLLREAS
Sbjct: 3  MEAEGIVEHGSSIAAPFIFFIVIGFQFLARWLEHLKKGGSNSQVELELRKSIKQLLREAS 62

Query: 61 TLSQPSTFAQAAKLRRLAAAKEKELAN 88
          TLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 63 TLSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]

BLAST of Lsi07G010540 vs. NCBI nr
Match: XP_023007643.1 (uncharacterized protein LOC111500212 [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 3.5e-34
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 2  EAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 61
          EAEGIV+HRSSIAAP IFLIVI FQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST
Sbjct: 6  EAEGIVEHRSSIAAPCIFLIVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 65

Query: 62 LSQPSTFAQAAKLRRLAAAKEKELAN 88
          LSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 66 LSQPSTFAQAAKLRRLAAAKEKELAN 91

[Close]

BLAST of Lsi07G010540 vs. NCBI nr
Match: XP_022923433.1 (uncharacterized protein LOC111431128 [Cucurbita moschata] >KAG6577814.1 Guided entry of tail-anchored proteins factor 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015853.1 Tail-anchored protein insertion receptor WRB [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.5 bits (389), Expect = 4.5e-34
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 2  EAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 61
          EAEGIV+HRSSIAAP IFL+VI FQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST
Sbjct: 4  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 63

Query: 62 LSQPSTFAQAAKLRRLAAAKEKELAN 88
          LSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 64 LSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]

BLAST of Lsi07G010540 vs. NCBI nr
Match: XP_023552250.1 (uncharacterized protein LOC111809975 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 7.7e-34
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 2  EAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 61
          EAEGIV+HRSS+AAP IFL+VI FQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST
Sbjct: 4  EAEGIVEHRSSLAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAST 63

Query: 62 LSQPSTFAQAAKLRRLAAAKEKELAN 88
          LSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 64 LSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]

BLAST of Lsi07G010540 vs. NCBI nr
Match: XP_004146176.1 (uncharacterized protein LOC101204142 [Cucumis sativus] >KGN55607.1 hypothetical protein Csa_010199 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 1.0e-33
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MEAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAS 60
          ME EGIV+HRSSIAAPFIF IVIGFQFLA+WLEHLKK GSNSQVEMELRKSIKQLL+EAS
Sbjct: 1  MEPEGIVEHRSSIAAPFIFFIVIGFQFLAKWLEHLKKRGSNSQVEMELRKSIKQLLKEAS 60

Query: 61 TLSQPSTFAQAAKLRRLAAAKEKELAN 88
          TLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 61 TLSQPSTFAQAAKLRRLAAAKEKELAN 87

[Close]

BLAST of Lsi07G010540 vs. TAIR 10
Match: AT4G16444.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-22
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 1  MEAEGIVQHRSSIAAPFIFLIVIGFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREAS 60
          ME E +++ R  +AAP  F++V+ FQ L++WL+ LKK GS +  E ELR  IKQLLREAS
Sbjct: 1  MEGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREAS 60

Query: 61 TLSQPSTFAQAAKLRRLAAAKEKELA 87
           LSQP+TFAQAAKLRR AA KEKELA
Sbjct: 61 ALSQPATFAQAAKLRRSAATKEKELA 86

The following BLAST results are available for this feature:

BLAST of Lsi07G010540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1H5D2	2.7e-21	62.79	Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1	[more]

BLAST of Lsi07G010540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BKE1	4.4e-35	95.40	uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=...	[more]
A0A6J1L884	1.7e-34	96.51	uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212...	[more]
A0A6J1E9M6	2.2e-34	95.35	uncharacterized protein LOC111431128 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A0A0L4T9	4.9e-34	93.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1	[more]
A0A6J1I7A9	6.6e-31	88.51	uncharacterized protein LOC111470261 OS=Cucurbita maxima OX=3661 GN=LOC111470261...	[more]

BLAST of Lsi07G010540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448478.1	9.1e-35	95.40	PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo]	[more]
XP_023007643.1	3.5e-34	96.51	uncharacterized protein LOC111500212 [Cucurbita maxima]	[more]
XP_022923433.1	4.5e-34	95.35	uncharacterized protein LOC111431128 [Cucurbita moschata] >KAG6577814.1 Guided e...	[more]
XP_023552250.1	7.7e-34	94.19	uncharacterized protein LOC111809975 [Cucurbita pepo subsp. pepo]	[more]
XP_004146176.1	1.0e-33	93.10	uncharacterized protein LOC101204142 [Cucumis sativus] >KGN55607.1 hypothetical ...	[more]

BLAST of Lsi07G010540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16444.1	1.9e-22	62.79	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 71..91
None	No IPR available	PANTHER	PTHR11760:SF40	SUBFAMILY NOT NAMED	coord: 10..87
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 10..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G010540.1	Lsi07G010540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048767	root hair elongation
biological_process	GO:0071816	tail-anchored membrane protein insertion into ER membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0043529	GET complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043621	protein self-association