Lsi07G010050 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G010050
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription factor UPBEAT1-like
Location	chr07: 14428166 .. 14428495 (-)
RNA-Seq Expression	Lsi07G010050
Synteny	Lsi07G010050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGATTACGAAGAAACACAGAATACCGTGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTTAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACCTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCGACTCGCAGTGAAGACGGTGGACATCGGAGAGCGGAGGAGTTGTTTCAGCAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGCGATAGAGAAAACGCCGTATCCTCGTAG

mRNA sequence

ATGAGTTCGATTACGAAGAAACACAGAATACCGTGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTTAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACCTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCGACTCGCAGTGAAGACGGTGGACATCGGAGAGCGGAGGAGTTGTTTCAGCAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGCGATAGAGAAAACGCCGTATCCTCGTAG

Coding sequence (CDS)

ATGAGTTCGATTACGAAGAAACACAGAATACCGTGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTTAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACCTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCGACTCGCAGTGAAGACGGTGGACATCGGAGAGCGGAGGAGTTGTTTCAGCAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTGTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGCGATAGAGAAAACGCCGTATCCTCGTAG

Protein sequence

MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS

Homology

[Close]

BLAST of Lsi07G010050 vs. ExPASy TrEMBL
Match: A0A5D3BZU8 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00200 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 86/109 (78.90%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS DRENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Lsi07G010050 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 8.2e-36
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MS I KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSPIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS DRENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Lsi07G010050 vs. ExPASy TrEMBL
Match: A0A2P5AW87 (Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294590 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIP 60
           MSS TK      K + RRT  R R   SR   ARR+  NGG  C+S VS KLE+L+ LIP
Sbjct: 1   MSSTTKDQ----KTNVRRTRRRGRKTRSRDCVARRSCNNGGGTCSSKVSGKLEALKKLIP 60

Query: 61  TRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVS 109
               +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYGS D E+AVS
Sbjct: 61  --GHEGEIVKTDQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Lsi07G010050 vs. ExPASy TrEMBL
Match: A0A2P5ED64 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_207440 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 58/109 (53.21%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIP 60
           MSS TK  +I    + RRT  R R   SR   A R+  NGG  C+S VS KLE+L+ LIP
Sbjct: 1   MSSTTKDQKI----NVRRTRRRGRKTRSRDCVALRSCNNGGGTCSSKVSDKLEALKKLIP 60

Query: 61  TRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVS 109
               +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYGS D E+AVS
Sbjct: 61  --GHEGEIVKTDQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Lsi07G010050 vs. ExPASy TrEMBL
Match: A0A314YX88 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32000 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.8e-14
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 7   KHRIPWKQSTRRTVLRSRYGSRILRA-RRNHKNGG---KACTSDVSAKLESLQSLIPTRS 66
           K  +  ++ TRRT  R R GSR   A RR+  NGG   K  +  VSAKLE+L+SLI + S
Sbjct: 9   KASLAGRRRTRRTSSRRRLGSRACGAPRRSFNNGGRKSKCSSKTVSAKLETLKSLI-SPS 68

Query: 67  EDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS 110
             G   +AEELFQ+TADYIVLL+ QV +LQRL+E YGS ++E   ++
Sbjct: 69  HAGKTLKAEELFQETADYIVLLRTQVVILQRLVELYGSSEKEKIAAA 114

[Close]

BLAST of Lsi07G010050 vs. NCBI nr
Match: KAG6607102.1 (hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 83/99 (83.84%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 12  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRA 71
           WKQSTRR VLRSRYGSRILRARR HKNGGKAC+SDVSA+LE+LQSLIPT++  +G HRR+
Sbjct: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62

Query: 72  EELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS 110
           EELFQ+TADYIVLLKNQVFVLQRLIEFYGS +RENAVS+
Sbjct: 63  EELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101

[Close]

BLAST of Lsi07G010050 vs. NCBI nr
Match: TYK04615.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 4.4e-36
Identity = 86/109 (78.90%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS DRENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Lsi07G010050 vs. NCBI nr
Match: KAA0056655.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MS I KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSPIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS DRENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Lsi07G010050 vs. NCBI nr
Match: KAG7036793.1 (hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-31
Identity = 77/99 (77.78%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 12  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRA 71
           WKQSTRR VLRSRYGSRILRARR HKNGGKAC+SDVSA+LE+LQSLIPT++  +G HRR+
Sbjct: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62

Query: 72  EELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVSS 110
           EELFQ+TADYI      VFVLQRLIEFYGS +RENAVS+
Sbjct: 63  EELFQETADYI------VFVLQRLIEFYGSDERENAVSA 95

[Close]

BLAST of Lsi07G010050 vs. NCBI nr
Match: PON40768.1 (transcription factor UPBEAT-like protein [Parasponia andersonii])

HSP 1 Score: 92.0 bits (227), Expect = 3.3e-15
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIP 60
           MSS TK      K + RRT  R R   SR   ARR+  NGG  C+S VS KLE+L+ LIP
Sbjct: 1   MSSTTKDQ----KTNVRRTRRRGRKTRSRDCVARRSCNNGGGTCSSKVSGKLEALKKLIP 60

Query: 61  TRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRENAVS 109
               +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYGS D E+AVS
Sbjct: 61  --GHEGEIVKTDQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Lsi07G010050 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-10
Identity = 40/96 (41.67%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 22  RSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRS-------------EDGGHR 81
           RSR G R  +   N +  G       S KL++L+SL+P  S             ED    
Sbjct: 8   RSRGGRRTSKKFGNRRTSG---GEKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVG 67

Query: 82  RAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDRE 105
             E+LFQ+TADYIV L+ QV VLQ+LIE YGS D++
Sbjct: 68  ETEQLFQETADYIVRLRGQVVVLQKLIEIYGSSDQK 100

[Close]

BLAST of Lsi07G010050 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 4.6e-07
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 13  KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEE 72
           K  T R   R+   SR         NG       V  KL +L+SL+P     GG    EE
Sbjct: 5   KTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGG-GETEE 64

Query: 73  LFQQTADYIVLLKNQVFVLQRLIEFY-GSGDRENAV 108
           LFQ+TA+YIV L+ QV VL++LIE Y  S D++  V
Sbjct: 65  LFQETAEYIVKLRTQVVVLKKLIEIYDNSSDQKKDV 99

The following BLAST results are available for this feature:

BLAST of Lsi07G010050 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G010050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZU8	2.2e-36	78.90	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UT08	8.2e-36	77.98	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A2P5AW87	1.6e-15	54.13	Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=Pan...	[more]
A0A2P5ED64	1.0e-14	53.21	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_207440 PE=4 SV...	[more]
A0A314YX88	8.8e-14	50.47	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_320...	[more]

BLAST of Lsi07G010050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607102.1	2.0e-36	83.84	hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK04615.1	4.4e-36	78.90	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
KAA0056655.1	1.7e-35	77.98	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
KAG7036793.1	3.3e-31	77.78	hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyro...	[more]
PON40768.1	3.3e-15	54.13	transcription factor UPBEAT-like protein [Parasponia andersonii]	[more]

BLAST of Lsi07G010050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39240.1	7.6e-10	41.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G29370.1	4.6e-07	40.63	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33124:SF70	SUBFAMILY NOT NAMED	coord: 15..105
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 15..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G010050.1	Lsi07G010050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0110165	cellular anatomical entity