Lsi07G009630 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G009630
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionU3 small nucleolar ribonucleoprotein protein IMP3
Locationchr07: 12442620 .. 12445210 (-)
RNA-Seq ExpressionLsi07G009630
SyntenyLsi07G009630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTACTACCCAAGGCCCAGCCCATCCTTTTAGGGTTTTTAATTATCTAAACCCTCAAACTACATCTTTCCTTTCTCCCAAGTCTCTGCCGTCGCCCCGTCGTCCTATCGTCGTCGCCGCCGGTTCACTTCTCTTTCTCTCTTTTCTGCTCTCCCACGTCCTCTTCAGTCTTCTCCCTCCCTTGACCCTTCCCCATAGAGATTTTTGTTTGAACCACACCGAGACCTTCTTCAGCTGCGAAGTGTTTTGAGGTGAAACAGAAGAAGAAAGGATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGTGGTCATAGGGAAGCCCAAGTAATGCATCGCTATCACATCACTGGACGGGACGATTACAAGAAGTAACACACTTTCTTCTGTTTTCTTCTATTTCTATTGTTTTCTTTCTTTTATCGCTTTTACTTTGATTTGATTTGATTTGATGTAGGTATTCGAGCTTGTGCCGGGGTGTTCAGAAGCTGGTCAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTTCGTTTGGAATTGACCGAGAAGCTCCTCGAAAAGCTGTGAGTTTTTGCCTCCTTTCGGGTATAATTTAAGAGAAACTAAATTTTCTACATTATATCAAGCAACTTTCTCTTCTGTTTGTGTATAATTTGTTTTCTTGCGTGCCTCATTTCATTTTATTGCCCAACCCTGTTGTTTTTTATATTTAATTTCAACGACACTTTGAAATCTTGTACTCCTGATTTAAACTATTGATTATTGTGTTTCCTATGGATATTGTGATTATTGTCCACAATATTAGTGATGAGAAGAAAGTTATGGCATGTTGTATTACTGCCCATTTTGATCACTTCTATCTTCTCCTCTCTAGCTTAGAGGTTCTAACAATACAAAAGCTAGTTATGACTTATGAAATTGAGAAATTGCATTACATTTAATTTCAGAATTGAAAATGCAATACAACAAGATGTTAAAAAAAGGTTGCTAAGCCTAAGACTCTGTCACTTGAACATTGTATCCCATAAAATAACTCATCTAGCTATTTTAGTTGGTTTAAAGTATCCATCCTAGATTCAAATCCTCCTGACACAATTACCTTTGTATAATTAAATGGTCCACATTTTTGTTGTCTATGCTAATTTTTTGGGAAAAGCATGACCGAATTGCTGATCATGTTTCTCTTATTGCCCAATACTCTTAATTCATCTACGATGGTTTCTAGAATGAAAGGTCTGTTTCTTAATTATTATATGAATGATTTAAACTCTAGTTGTCCATTTTACGTCTACACCTACCCATTAAAGAAACTATCAACGGTTCCTCTGGACTTATCAATACTTTTTTCTCTCTCTAATTCTTAAGCCATTTTAAATCTGATATTTTTTGGCTCAATGTTTCTAGACCCAAATTTTTGTTTCAAGTTTTCTAAGATTCTGAACTAATAATGGCACAAGAAAGAAACTATTAATAATGTATATTATTTTTCTAATGCTGAATGCATTTTAAACTTGTCATTAATAATATCTTTTGATCCAAAGTTTCAAGAAAAGAAGCCAATTTTTTTTTTTTTTTTAAATTGACATAATTATTAGTGTGAGAAAATACGAGTGATTACATGTAACCATTTCTACTATCATTTGTAGTTGCACTTATAAACACCTCTTTTAGCACTTAAAAAGTCAATCCAAATAAGTCTTTTATCTGTCATACTCTCACCTTTTCTTCCTTGCTTCTCTCCTGAAAAACAAATATGACAGGTATAATATAGGCGTGATACCAACCCGACAGAGCCTGAATTTATGCGATCGCCTGTCAGTGTCATCCTTTTGCAGGTAAATCAAACACCCTGCAGAAAAGAATTCTTTCTACTTTGCGTTGTTGCATGCTTTCTACTGCTAATAGCCTAATTTTACCAATATTTCAACTCTCAAAATAGCAACTCCAATTGCAGGCAGTTGTCAACACTGTTATTTCTTTTGCTGCATATGTTTTTTACCTCAAGGCTGTTTTCCCCTCTATTTTCAGACGGAGGCTATCGACAGTGTTGGTACGGTTGAAATTTGCCGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAGGGGCACATTAGAGTTGGTCCGGAGACGGTTACTGACCCAGCATTTCTAGTTACTAGGAATATGGAGGACTTCATAACATGGGTTGATTCCTCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAATTGGATGATTACGATGCCATTAACTGTTGAGATGCTGTCCAAGTTGCCCCTTTTTCTACACTTCATCTTGTATGAATCTTTTTCTCGCACTCTTATTGAAATGGCTAGTTAATGTAGCGTGAGTTTTCCAATTTCTTTTCTAATCAATATATATATATTCTCTGTTACAAGCCTGATATCCAGCTTCATTGATGCCTCATGGTTGAGCTTGTAAGGTTAAATTTCAATTGTAATTGACATGTACTCATTCGCTTAAGCTTGGAGGGTTAAATCTTTATGTCCTCTTTTTATCATACTTTAAAAAGCAACGATATGATACGTGTT

mRNA sequence

CTACTACCCAAGGCCCAGCCCATCCTTTTAGGGTTTTTAATTATCTAAACCCTCAAACTACATCTTTCCTTTCTCCCAAGTCTCTGCCGTCGCCCCGTCGTCCTATCGTCGTCGCCGCCGGTTCACTTCTCTTTCTCTCTTTTCTGCTCTCCCACGTCCTCTTCAGTCTTCTCCCTCCCTTGACCCTTCCCCATAGAGATTTTTGTTTGAACCACACCGAGACCTTCTTCAGCTGCGAAGTGTTTTGAGGTGAAACAGAAGAAGAAAGGATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGTGGTCATAGGGAAGCCCAAGTAATGCATCGCTATCACATCACTGGACGGGACGATTACAAGAAGTATTCGAGCTTGTGCCGGGGTGTTCAGAAGCTGGTCAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTTCGTTTGGAATTGACCGAGAAGCTCCTCGAAAAGCTACGGAGGCTATCGACAGTGTTGGTACGGTTGAAATTTGCCGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAGGGGCACATTAGAGTTGGTCCGGAGACGGTTACTGACCCAGCATTTCTAGTTACTAGGAATATGGAGGACTTCATAACATGGGTTGATTCCTCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAATTGGATGATTACGATGCCATTAACTGTTGAGATGCTGTCCAAGTTGCCCCTTTTTCTACACTTCATCTTGTATGAATCTTTTTCTCGCACTCTTATTGAAATGGCTAGTTAATGTAGCGTGAGTTTTCCAATTTCTTTTCTAATCAATATATATATATTCTCTGTTACAAGCCTGATATCCAGCTTCATTGATGCCTCATGGTTGAGCTTGTAAGGTTAAATTTCAATTGTAATTGACATGTACTCATTCGCTTAAGCTTGGAGGGTTAAATCTTTATGTCCTCTTTTTATCATACTTTAAAAAGCAACGATATGATACGTGTT

Coding sequence (CDS)

ATGAGGAAGCTAAAGTTTCACGAGCAGAAGCTTTTGAAGAAGGTCAACTTCTTAGAATGGAAGAGAGAAGGTGGTCATAGGGAAGCCCAAGTAATGCATCGCTATCACATCACTGGACGGGACGATTACAAGAAGTATTCGAGCTTGTGCCGGGGTGTTCAGAAGCTGGTCAGCATGTTGAAGAAGATGAACGAGAAAGACCCTTTTCGTTTGGAATTGACCGAGAAGCTCCTCGAAAAGCTACGGAGGCTATCGACAGTGTTGGTACGGTTGAAATTTGCCGAGCACTTGAGGGAAGCTGTTACATACATTGAGCAGGGGCACATTAGAGTTGGTCCGGAGACGGTTACTGACCCAGCATTTCTAGTTACTAGGAATATGGAGGACTTCATAACATGGGTTGATTCCTCAAAGATAAAGAGAAAGGTTCTACAATACAATGATAAATTGGATGATTACGATGCCATTAACTGTTGA

Protein sequence

MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSMLKKMNEKDPFRLELTEKLLEKLRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAINC
Homology
[Close]
BLAST of Lsi07G009630 vs. ExPASy Swiss-Prot
Match: P32899 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-42
Identity = 86/180 (47.78%), Postives = 121/180 (67.22%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           +RKLK HEQKLLKKV+FLEWK++ GHR+ QVM  YHI  R+DY KY+ +C  +++L + L
Sbjct: 2   VRKLKHHEQKLLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKL 61

Query: 61  KKMNEKDPFRLELTEKLLEKL--------------------------RRLSTVLVRLKFA 120
             +   DPFR +  + LL+KL                          RRL  ++ RLK A
Sbjct: 62  SLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 155
           E +++AV +IEQGH+RVGP  + DPA+LVTRNMED++TWVD+SKIK+ +L+Y +++DD+D
Sbjct: 122 ETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181

[Close]
BLAST of Lsi07G009630 vs. ExPASy Swiss-Prot
Match: Q3T0M3 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-41
Identity = 89/180 (49.44%), Postives = 123/180 (68.33%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KL                         RRL TVL++L+ A
Sbjct: 62  LRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 155
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Lsi07G009630 vs. ExPASy Swiss-Prot
Match: Q921Y2 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Imp3 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.0e-41
Identity = 87/180 (48.33%), Postives = 123/180 (68.33%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R++Y +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFA 120
           L+ + E+DPFR+  +  LL+KL                         RRL T+L++L+ A
Sbjct: 62  LRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 155
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Lsi07G009630 vs. ExPASy Swiss-Prot
Match: Q9NV31 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP3 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-40
Identity = 88/180 (48.89%), Postives = 122/180 (67.78%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWK-REGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSM 60
           +RKLKFHEQKLLK+V+FL W+  +    E +V+ RY +  R+DY +Y+ L R V++L   
Sbjct: 2   VRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARR 61

Query: 61  LKKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFA 120
           L+ + E+D FR+  +  LL+KL                         RRL TVL++L+ A
Sbjct: 62  LRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMA 121

Query: 121 EHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYD 155
           +HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVDSSKIKR VL+YN++ DD+D
Sbjct: 122 QHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181

[Close]
BLAST of Lsi07G009630 vs. ExPASy Swiss-Prot
Match: O13835 (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp3 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-38
Identity = 83/183 (45.36%), Postives = 116/183 (63.39%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKR-EGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSM 60
           MR LK HEQKLL+KV+FL +K  +  HR+  VM RYHI+ R++Y+KY+ +C   ++L   
Sbjct: 1   MRILKHHEQKLLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHR 60

Query: 61  LKKMNEKDPFRLELTEKLLEKL--------------------------RRLSTVLVRLKF 120
           L  ++  DPFRL+    LLEKL                          RRL  ++ +L+ 
Sbjct: 61  LSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRM 120

Query: 121 AEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDY 157
           ++ + EA   IEQGH+RVGP  +TDPA+LVTR++EDF+TW D+SKIKR + +YNDKLDDY
Sbjct: 121 SQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDY 180

[Close]
BLAST of Lsi07G009630 vs. ExPASy TrEMBL
Match: A0A5D3BRX0 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00220 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 156/183 (85.25%), Postives = 158/183 (86.34%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

[Close]
BLAST of Lsi07G009630 vs. ExPASy TrEMBL
Match: A0A0A0KZG3 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126420 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.6e-77
Identity = 155/183 (84.70%), Postives = 158/183 (86.34%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

[Close]
BLAST of Lsi07G009630 vs. ExPASy TrEMBL
Match: A0A5D3DJI4 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00290 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.2e-77
Identity = 155/183 (84.70%), Postives = 157/183 (85.79%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMNEKDPFR ELTEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRSELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

[Close]
BLAST of Lsi07G009630 vs. ExPASy TrEMBL
Match: A0A6J1GW22 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 GN=LOC111457412 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.4e-76
Identity = 153/183 (83.61%), Postives = 156/183 (85.25%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

[Close]
BLAST of Lsi07G009630 vs. ExPASy TrEMBL
Match: A0A6J1J025 (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita maxima OX=3661 GN=LOC111480011 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 9.0e-76
Identity = 152/183 (83.06%), Postives = 155/183 (84.70%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLV ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVCML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

[Close]
BLAST of Lsi07G009630 vs. NCBI nr
Match: KAA0041194.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >KAA0046137.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa] >TYK02423.1 U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 2.6e-77
Identity = 156/183 (85.25%), Postives = 158/183 (86.34%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

[Close]
BLAST of Lsi07G009630 vs. NCBI nr
Match: XP_004153543.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 hypothetical protein Csa_015405 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 3.4e-77
Identity = 155/183 (84.70%), Postives = 158/183 (86.34%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRK+LQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKILQYNDQLDDYDA 180

[Close]
BLAST of Lsi07G009630 vs. NCBI nr
Match: XP_038880355.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida])

HSP 1 Score: 297.0 bits (759), Expect = 9.8e-77
Identity = 154/183 (84.15%), Postives = 158/183 (86.34%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVNML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMN+KDPFRLE+TEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNDKDPFRLEMTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

[Close]
BLAST of Lsi07G009630 vs. NCBI nr
Match: TYK23826.1 (U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 155/183 (84.70%), Postives = 157/183 (85.79%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLV+ML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVTML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMNEKDPFR ELTEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRSELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYND+LDDYDA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDQLDDYDA 180

[Close]
BLAST of Lsi07G009630 vs. NCBI nr
Match: XP_022955364.1 (U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_023526276.1 U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita pepo subsp. pepo] >KAG6581715.1 U3 small nucleolar ribonucleoprotein IMP3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018192.1 U3 small nucleolar ribonucleoprotein IMP3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 4.9e-76
Identity = 153/183 (83.61%), Postives = 156/183 (85.25%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLKFHEQKLLKKVNFLEWKREGGHRE QVMHRYHITGRDDYKKYSS+CRGVQKLVSML
Sbjct: 1   MRKLKFHEQKLLKKVNFLEWKREGGHRETQVMHRYHITGRDDYKKYSSICRGVQKLVSML 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           KKMNEKDPFRLELTEKLLEKL                         RRLSTVLVRLKFAE
Sbjct: 61  KKMNEKDPFRLELTEKLLEKLYNMGVIPTRQSLNLCDRLSVSSFCRRRLSTVLVRLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 159
           HLREAVTYIEQGHIRVGPETV DPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDD+DA
Sbjct: 121 HLREAVTYIEQGHIRVGPETVNDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDFDA 180

[Close]
BLAST of Lsi07G009630 vs. TAIR 10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 238.4 bits (607), Expect = 3.9e-63
Identity = 120/181 (66.30%), Postives = 141/181 (77.90%), Query Frame = 0 

Query: 1   MRKLKFHEQKLLKKVNFLEWKREGGHREAQVMHRYHITGRDDYKKYSSLCRGVQKLVSML 60
           MRKLK+HE+KL+KKVNFLEWKREG HRE ++ +RYH+  RDDYKKYS LCR VQKL +++
Sbjct: 1   MRKLKYHEKKLIKKVNFLEWKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIM 60

Query: 61  KKMNEKDPFRLELTEKLLEKL-------------------------RRLSTVLVRLKFAE 120
           K+M+  DPFR+++T+ LLEKL                         RRLSTVLV LKFAE
Sbjct: 61  KQMDPADPFRIQMTDMLLEKLYNMGVIPTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAE 120

Query: 121 HLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDA 157
           H +EAVTYIEQGH+RVGPET+TDPAFLVTRNMEDFITWVDSSKIKRKVL+YND LDDYD 
Sbjct: 121 HHKEAVTYIEQGHVRVGPETITDPAFLVTRNMEDFITWVDSSKIKRKVLEYNDTLDDYDM 180

The following BLAST results are available for this feature:
BLAST of Lsi07G009630 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P328993.7e-4247.78U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae (s... [more]
Q3T0M31.8e-4149.44U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus OX=9913 GN=IMP3 ... [more]
Q921Y29.0e-4148.33U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus OX=10090 GN=Im... [more]
Q9NV311.2e-4048.89U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens OX=9606 GN=IMP... [more]
O138353.2e-3845.36U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe (... [more]
BLAST of Lsi07G009630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BRX01.3e-7785.25U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A0A0KZG31.6e-7784.70S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G126... [more]
A0A5D3DJI46.2e-7784.70U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 OS=Cucumis melo var. m... [more]
A0A6J1GW222.4e-7683.61U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1J0259.0e-7683.06U3 small nucleolar ribonucleoprotein protein IMP3 OS=Cucurbita maxima OX=3661 GN... [more]
BLAST of Lsi07G009630 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041194.12.6e-7785.25U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
XP_004153543.13.4e-7784.70U3 small nucleolar ribonucleoprotein protein IMP3 [Cucumis sativus] >KGN53772.1 ... [more]
XP_038880355.19.8e-7784.15U3 small nucleolar ribonucleoprotein protein IMP3 [Benincasa hispida][more]
TYK23826.11.3e-7684.70U3 small nucleolar ribonucleoprotein IMP3-like isoform X1 [Cucumis melo var. mak... [more]
XP_022955364.14.9e-7683.61U3 small nucleolar ribonucleoprotein protein IMP3 [Cucurbita moschata] >XP_02352... [more]
BLAST of Lsi07G009630 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G15750.13.9e-6366.30Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 82..145
e-value: 2.3E-8
score: 43.8
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 82..128
e-value: 1.7E-11
score: 43.7
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 82..143
e-value: 5.00282E-8
score: 45.7034
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..82
e-value: 1.4E-9
score: 47.8
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..62
e-value: 8.6E-8
score: 33.0
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 82..157
e-value: 5.2E-8
score: 35.0
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..156
NoneNo IPR availablePANTHERPTHR11831:SF33ALPHA-L RNA-BINDING MOTIF/RIBOSOMAL PROTEIN S4 FAMILY PROTEINcoord: 1..156
NoneNo IPR availablePROSITEPS50889S4coord: 82..148
score: 11.77329
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 26..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G009630.1Lsi07G009630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0003723 RNA binding