Lsi07G008270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G008270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr07: 9194211 .. 9196691 (-)
RNA-Seq ExpressionLsi07G008270
SyntenyLsi07G008270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGAATAAGCATGAGTATAGCCTTAACATTAATTGGCATGTAATCTTTTATACCGTGGCAGATTTAGTAAAAGCCCAAAGGCTCTTTGGAGATTTCTCTTGAAGTACATTTAATTTTTCATTTTTTAATTATTACTAGTATCATACTAATTATATTCAATTGCTTATTAATATTATTATTCACGTTTCAATATTCTTATTTTATGTTTTAACTTTTAATTATATGCATGCATACATACACATGCATATATATAAATTTAATTTGAAATCTAAATGGAGAGATGCTGAAAAAGAAAATTTATGGGTCGTCGTCAACGTTGAAGAAAAGTAGTAGTTGTTCTAATAGATGTTCTACAAAAATGAATTTAGAAGATTTGATCCTAGTTTAAAAACAATAATTCTTGATTTATTTGACAAAATAGATAATGAAATGCAGCGATTTCATAATATGAAATGTCGTAAAAGACAATTGTGATGTACTGAACTAATTGTTCAGTAAATTTATAAATGTTGGAATTGATTCATTTTTTTTAATTGAATTTTAAGTAAAGCCCCCTAAATAAATTTTATAGATCCACTATTGCTTTTGTACTTAAAAATGTGAATATCCGTACACATAATCTATATGGCAGAGATGGTAGAAGATTGGTAAATTTATTTATATCACTCACATAACATACTTCCTTTACTTGCATTATAACTTTCATTTTATTAATTAATGTGTAATGGTAGCAATGATTAGGTGCAACCGCTTATATTGCACTTGTATCGTGCAATTCTATTTTGTAACATAGTAAAAATGTAGTAATTAATTCGATTTTCTTAAAATATATATATATTCTTTTTTTTCTACCTGACAAATTTTTATTAGATAAGGTTCATCAACCATTACCTAAATATTTTTTTAAATAAATTAAAAGGTTGGAGATCATCTGTATTCGGTCCCCATCAGATGTAATCGGATCAAATTTTCTGAGGAATTTATTGCCTTTTTCTTTTTTATGCTATCTATAATATAATTAAAACTTAGAAAAATTACTATAAACAGAAAAAAATCATATTATTTATAAATATAGAAAAATTTCACTATCTATCAAAGACAGATAGATCGCAGTTTATCGTTGATAAACAGTAAAAATTTTCTATATTTACTTTTATCGCGATTTATCGCAGATAGATAATAAAAATTTTCTATATTTATAAATAGTCTGACTCATTTTTCTATATTTAAAAATAGCCATAAAACTTATTTATATGGTAATAACAAAGATAAAATGTATGCCTTTAACTTAAATAATATATGGAATCAATTCTAAATTATGAATTTCATAGATTTTCTTTGTGTGTGAATATATCAATTTATACTTCATAGTCTAAACTTTCATAGGGGTATAAATTTACACCTTTATTAAAATTCAAACATATCATTTATATCAATTAAACTCCTAATTTTTCATAAACTAATCAGTTTAGACCATTTATTATGATTACTTTTGAAAATCATTCATACATCAATTCTCATACGTGTATGAACTTCTTCAAATATTGGTTCTACAAAATGGGCAACCAAAATTGATGCAGAGACAATTTCAAAAGGAATCCTAAATAGGAGTTTAAATTGATTCACATCTTTTTCACTTTATTTTAAGGAAAGAGAAGTCTCACACAATGATTTTTCAAATGAAACATAATGGAAGGTATAAATTAACACACTTCCAAAAGTTCATGGTTTAAATTGATACAATGATTATTAGTTCATTGTTTTAATTGGTACAATCTCTAAAATTTAGAGGGATAAATCGATTATATATATATATATATATATATATATATATATATTTATTAACAATCGCAAGGTAAAAGATTTTGAGAGAAAATCTACATGTAGATAGAGGCCACCACCACTACGAGTATAGCTCTTCTAAGCTGGTTTTTTATAGCTGGAAAAAAAAAAAAAGTAATATGTAATCCAAGGTAAGCAAGGAAACACATCAATTTCTACAATATATTACAAAGCCTTCCAATAACTTTTCCTACCAAAAAAAAAAAAAAACATATCAAACAATTTAACACTCTTTCCCAAAACTCTATTACAGAAGAGAATAAATTAAATTGTCTACAATCACTTTCACAGTAAAGATGAGAAAGTATTCCTGTCATATGGTGCAGTGAAGGTTGCAGATGTCACAGTTGAGGACGCTTCAGATGACATTGTTGAATTTCCAAGGATGTTTGTTCCAGAGGATAGACTATCAGAAGACATCCCCTCTCTATTCCCTTTCTTTTCCTCTGGATCCCTTACTTTTAGATCCATGAAGTCCGAAATCAACCCCGGTTTCGTTATCTTTCTATCTTCAATACTCATCTCGCCCGTTAGCATCTTTACCACAGTCGACATGGATGGACGGAGTTTTGGACTGTCTTGCGTGCAAAGTAGACCTATCTTTAGATATTTACAAGCCTCTTCAGCATCGTAG

mRNA sequence

ATGGATAAAGATGAGAAAGTATTCCTGTCATATGGTGCAGTGAAGGTTGCAGATGTCACAGTTGAGGACGCTTCAGATGACATTGTTGAATTTCCAAGGATGTTTGTTCCAGAGGATAGACTATCAGAAGACATCCCCTCTCTATTCCCTTTCTTTTCCTCTGGATCCCTTACTTTTAGATCCATGAAGTCCGAAATCAACCCCGGTTTCGTTATCTTTCTATCTTCAATACTCATCTCGCCCGTTAGCATCTTTACCACAGTCGACATGGATGGACGGAGTTTTGGACTGTCTTGCGTGCAAAGTAGACCTATCTTTAGATATTTACAAGCCTCTTCAGCATCGTAG

Coding sequence (CDS)

ATGGATAAAGATGAGAAAGTATTCCTGTCATATGGTGCAGTGAAGGTTGCAGATGTCACAGTTGAGGACGCTTCAGATGACATTGTTGAATTTCCAAGGATGTTTGTTCCAGAGGATAGACTATCAGAAGACATCCCCTCTCTATTCCCTTTCTTTTCCTCTGGATCCCTTACTTTTAGATCCATGAAGTCCGAAATCAACCCCGGTTTCGTTATCTTTCTATCTTCAATACTCATCTCGCCCGTTAGCATCTTTACCACAGTCGACATGGATGGACGGAGTTTTGGACTGTCTTGCGTGCAAAGTAGACCTATCTTTAGATATTTACAAGCCTCTTCAGCATCGTAG

Protein sequence

MDKDEKVFLSYGAVKVADVTVEDASDDIVEFPRMFVPEDRLSEDIPSLFPFFSSGSLTFRSMKSEINPGFVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS
Homology
[Close]
BLAST of Lsi07G008270 vs. ExPASy TrEMBL
Match: A0A103YJJ2 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011331 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.6e-12
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 57  LTFRSMKSEINPGFVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
           L  RSMKSE+ PGFVI  SS  ISP +I TTVD+ GRSFGLS V  RPIF+YLQASSAS
Sbjct: 52  LILRSMKSEMRPGFVILPSSTFISPDNILTTVDITGRSFGLSWVHKRPIFKYLQASSAS 110

[Close]
BLAST of Lsi07G008270 vs. ExPASy TrEMBL
Match: Q0E3M8 (Os02g0165200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0165200 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.2e-06
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 57  LTFRSMKSEINPGFVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
           LT RS+KS I  G +IF SS  ISPVS+ TT+D+ GR F  SCV   PIFR +QA + S
Sbjct: 59  LTLRSIKSLIIAGLLIFASSTSISPVSMRTTIDIVGRCFVTSCVHKSPIFRNIQACATS 117

[Close]
BLAST of Lsi07G008270 vs. ExPASy TrEMBL
Match: A0A0P0VF91 (Os02g0165200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0165200 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.2e-06
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 57  LTFRSMKSEINPGFVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
           LT RS+KS I  G +IF SS  ISPVS+ TT+D+ GR F  SCV   PIFR +QA + S
Sbjct: 59  LTLRSIKSLIIAGLLIFASSTSISPVSMRTTIDIVGRCFVTSCVHKSPIFRNIQACATS 117

[Close]
BLAST of Lsi07G008270 vs. ExPASy TrEMBL
Match: A0A446XUR6 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G246880 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 46/106 (43.40%), Postives = 53/106 (50.00%), Query Frame = 0 

Query: 13  AVKVADVTV---EDASDDIVEFPRMFVPEDRLSEDIPSLFPFFSSGSLTFRSMKSEINPG 72
           AVKV +V V    D  DD  E   M V  D   +D+  L        L+FRS+KS I  G
Sbjct: 2   AVKVMEVRVVLPVDDDDDGEERATMEVSSD---DDVALL--------LSFRSLKSRITSG 61

Query: 73  FVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
            VI  +S   SP +I  TVDM GR F    V  RP FR L ASS S
Sbjct: 62  LVISCNSTSSSPFNIRVTVDMSGRRFVTFLVHRRPTFRNLHASSTS 96

[Close]
BLAST of Lsi07G008270 vs. ExPASy TrEMBL
Match: J3L9V7 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 33/59 (55.93%), Postives = 36/59 (61.02%), Query Frame = 0 

Query: 57  LTFRSMKSEINPGFVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
           LT RSMKS I  G +I   S   SPVS+ TT D+ GR F  SCV   PIFR LQA S S
Sbjct: 21  LTLRSMKSLIIAGLLILSRSTSNSPVSMRTTTDIVGRCFVTSCVHKSPIFRNLQACSTS 79

[Close]
BLAST of Lsi07G008270 vs. NCBI nr
Match: KVI10309.1 (hypothetical protein Ccrd_011331 [Cynara cardunculus var. scolymus])

HSP 1 Score: 80.1 bits (196), Expect = 1.4e-11
Identity = 42/59 (71.19%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 57  LTFRSMKSEINPGFVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
           L  RSMKSE+ PGFVI  SS  ISP +I TTVD+ GRSFGLS V  RPIF+YLQASSAS
Sbjct: 52  LILRSMKSEMRPGFVILPSSTFISPDNILTTVDITGRSFGLSWVHKRPIFKYLQASSAS 110

[Close]
BLAST of Lsi07G008270 vs. NCBI nr
Match: KAG5546805.1 (hypothetical protein RHGRI_018841 [Rhododendron griersonianum])

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 62  MKSEINPGFVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
           MKSEI  GFVI   S+ ISPV+I TTVDM+GR FG S VQ RPIF+ LQA+SAS
Sbjct: 1   MKSEIRAGFVISFPSMSISPVNILTTVDMEGRRFGASWVQRRPIFKNLQATSAS 54

[Close]
BLAST of Lsi07G008270 vs. NCBI nr
Match: KAB8086008.1 (hypothetical protein EE612_009054 [Oryza sativa] >BAF07910.1 Os02g0165200 [Oryza sativa Japonica Group] >BAS77146.1 Os02g0165200 [Oryza sativa Japonica Group])

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-06
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 57  LTFRSMKSEINPGFVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
           LT RS+KS I  G +IF SS  ISPVS+ TT+D+ GR F  SCV   PIFR +QA + S
Sbjct: 59  LTLRSIKSLIIAGLLIFASSTSISPVSMRTTIDIVGRCFVTSCVHKSPIFRNIQACATS 117

[Close]
BLAST of Lsi07G008270 vs. NCBI nr
Match: VAI79957.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 46/106 (43.40%), Postives = 53/106 (50.00%), Query Frame = 0 

Query: 13  AVKVADVTV---EDASDDIVEFPRMFVPEDRLSEDIPSLFPFFSSGSLTFRSMKSEINPG 72
           AVKV +V V    D  DD  E   M V  D   +D+  L        L+FRS+KS I  G
Sbjct: 2   AVKVMEVRVVLPVDDDDDGEERATMEVSSD---DDVALL--------LSFRSLKSRITSG 61

Query: 73  FVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
            VI  +S   SP +I  TVDM GR F    V  RP FR L ASS S
Sbjct: 62  LVISCNSTSSSPFNIRVTVDMSGRRFVTFLVHRRPTFRNLHASSTS 96

[Close]
BLAST of Lsi07G008270 vs. NCBI nr
Match: KAF7097982.1 (hypothetical protein CFC21_099757 [Triticum aestivum])

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-04
Identity = 46/106 (43.40%), Postives = 52/106 (49.06%), Query Frame = 0 

Query: 13  AVKVADVTV---EDASDDIVEFPRMFVPEDRLSEDIPSLFPFFSSGSLTFRSMKSEINPG 72
           AVKV +V V    D +DD  E   M V  D   +D+  L        L+FRS+KS I  G
Sbjct: 2   AVKVMEVRVVLPVDDNDDGEERATMEVSSD---DDVALL--------LSFRSLKSRITSG 61

Query: 73  FVIFLSSILISPVSIFTTVDMDGRSFGLSCVQSRPIFRYLQASSAS 116
            VI   S   SP SI  TVDM GR F    V   P FR L ASS S
Sbjct: 62  LVISCDSTSSSPFSIRVTVDMSGRRFVTFLVHRSPTFRNLHASSTS 96

The following BLAST results are available for this feature:
BLAST of Lsi07G008270 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi07G008270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A103YJJ26.6e-1271.19Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_011... [more]
Q0E3M84.2e-0655.93Os02g0165200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0165200 PE... [more]
A0A0P0VF914.2e-0655.93Os02g0165200 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0165200 PE... [more]
A0A446XUR61.3e-0443.40Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G... [more]
J3L9V71.3e-0455.93Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
BLAST of Lsi07G008270 vs. NCBI nr
Match NameE-valueIdentityDescription
KVI10309.11.4e-1171.19hypothetical protein Ccrd_011331 [Cynara cardunculus var. scolymus][more]
KAG5546805.11.1e-0868.52hypothetical protein RHGRI_018841 [Rhododendron griersonianum][more]
KAB8086008.18.6e-0655.93hypothetical protein EE612_009054 [Oryza sativa] >BAF07910.1 Os02g0165200 [Oryza... [more]
VAI79957.12.8e-0443.40unnamed protein product [Triticum turgidum subsp. durum][more]
KAF7097982.16.2e-0443.40hypothetical protein CFC21_099757 [Triticum aestivum][more]
BLAST of Lsi07G008270 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G008270.1Lsi07G008270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane