Lsi07G008170 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G008170
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Phytoene synthase, chloroplastic
Location	chr07: 9114307 .. 9117400 (-)
RNA-Seq Expression	Lsi07G008170
Synteny	Lsi07G008170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTTGGCTTCCTCTGCTGCTGTGGTGAATCCTTCAAGATCTTCTGAAGAAAGGGTCTATGAAGTTGTGCTGAAGCAAGCGGCTCTTGTCAGGGAACCCAAAAGGGATATACAGAGAGCTTTGGATTGGGAAAAAACCATCCAAAATGAGGGCATCACTGATGGGAATCTCTTGTCTGAGGCTTATGCTCGCTGTGGTGTGGTCTGTGCTGAATATGCCAAAACATTTTACTTGGGTAAACTTTCCTCCTTCCTACTCTTTTCATTTCTGGGTTGAATGCTTTTTGTTTCTGTCACCCTGTTTTCAGAGTTCCATTACAATTTGTACTGCTGCCTTTCTTTGAGATATAGATAATAGATTGTTTGGTTGCCAAGAAAATGGAATTGGAATGTTTTCTACTCTTGTTATACCTTTCCCAATGGCTGGAGTTGGGTTAAAACCATTTGGCTTTTTCTCTTTTCCCCCTTTGTTATTACAGATTGTAGTAAAGTAAAAAAGAGGCATGCACTTTTTCTAACTCTGTAGTCTGCAAAAGATGGGAGGATTATTGCTCCATTTTGATCTTAGCAAAGCATCTCAACTTACAAATAATTGTTTGATTGAGTCTCTTTCTTGCAATTCTCAGGGACACAACTTATGACACCAGAGCGAAGAAGAGCTGTGTGGGCGATTTACGGTATCAGTCATCCTCTTCCTCCAGCATGTTATCTTTATGTCTGCTGCAATTTTTGTTCATTTTTGTAGACCAAGTTGCTTGTTGGACATGGCAATGGACTTACACTAGTTGTAGCTATGCTTTCCTATAAGACATGTAGAATCACAAGTTGTCTTTTAACTTTTTGGTTAAATTATAAGTTTGGGCTTTGTAATCCAAGATTTGTATCTAGGTCCTTGAATAAGTGTTCAATAACTCCCTAATTCTTTAGTGGTATGTCCTACTCCTAAAGGTTCTTGAACTTTAAAAAGTTTATAATAGATCCATAGATTTTCATTTTCGTATCTAATGGATCTCTAAACTTTTTTCGTTTTGTCCAAAATCCCTAACTTACTAGACATTTTCTGAAGTTTTAAAACGTATTGAATACAAATTTGAAAGTTTATGGACTTATTACAAACGTTTTAAAGTTGAAGAACCTATTAGACACAAGTTGAAATTTAGGAACCTATTAGACAACTTTTCAAATAAAGGCTCCTATGAGACACAATCCAAAAGCTTAGAGACCAAACTTGTAATTTATCCTAACTATTATATTGTTTCTTTAAGATTTGTAGTTAAGTTGGGTATTAATATAAATGACAGTTAATTGAACACAATTCTTAATCACTACTCTTTTTATTTCACAATTAGAGTGCCAAAGACCCTTGATCTCCATTAACTTTAGAGAGACTTTGGAAGACAATAAAAGTTGTAAGTCATTAAGTTATCAACTGGAAAATTTGAACCCAAGGCTTTCAACGGTATCTCAGCACATCTTAAGCTCTTACTTAACCTCAGGGATAATTCTTAATCACTACATTTGCAGTCCTGATACTTTTTATATGTCATTCAATAAAAATATACCATCCCTGCACTTACTATGCTATCCTTTTTGTTCATACTACTGCCATAGTAGCAGTTTGCCTCGCAGTTCATAGCATTCCTTTTGATGTTATTTGAAGTTTTGAACATTCAAGAGTTCAACTCTTTGTAATGCAGTGTGGTGCAGAAGGACCGATGAGCTCGTGGATGGACCTAATGCTTCACACATTACCCCTAAAGCTCTTGAGCGATGGGAAAAACGACTAACTGATCTATTTGAGGGTCGACCGTATGATATGTATGATGCTGCTCTTTCCGATACTGTCTCAAAATACCCTGTTGACATTCAGGTAAACTTGACTTGGGGTCTGTTTAAAATGATTTTCACGATATTTATGTTTCTCTTCACTCCCTTTGTGATATGAGAACTTTAGGCTGCCATGACTAACATCTTGTGAAACCTAACAAAAAGCCAGATCCCAGTGAAGAAATGAACTTTTTTGATAGTACAAGAACAGAGAGGAGCTTACACAAATTGGAGATGTTATTGCCTGCTCTTTATCATTAAAATTTGATCATATAAGTTAATGAGATTTAGCCCTTTTTTGCTCTAATTTGAATTGGCAGTGAATGAATTTGTTCGGTCTAATCAAAAGCACACGAATTAAAACGAGCAACAATGATTTAACTACTCTCGTCTTCGAGTAAAGGAGGTCCATTTGTGTATGTTTTGACTTTTGATTCACTTGGCTTGAAATTATACGTTATGTTTTTGACAGCCCTTCAAGGACATGATCGAAGGAATGAGGTTGGACCTGCGAAAATCGAGATATGACAACTTTGACGAGCTTTACCTTTATTGCTATTATGTTGCGGGGACTGTGGGGCTCATGAGTGTTCCTGTCATGGGATTGGCACCTGAGTCGAAAGCTTCAGTAGAGAGCGTCTACAATGCAGCATTGGCTCTCGGACTCGCCAATCAACTCACAAACATTCTCAGAGACGTTGGAGAAGAGTAAGCTAATTTCCTCCACCATCTTTATATATCAACTATATTGCTTTCTAAACCATAGGGTTGCAAATTAGTTTCATAACAACCTTAAGATTTAGTTGTTAAAAACGAAACAAACGCAAAACCTTTTCGAAGTTTACGATAGTAACCTACATTTAGTTGTTCATTCATATCTTCCTTTTGGACAGTGCTAGGAGGGGAAGAGTGTATCTCCCACAAGACGAGTTGGCACAAGCAGGGCTATGCGACGACGACATATTCCGAGGGAAAGTGACGGACAAGTGGCGGTTTTTCATGAAAGGACAGATAAAAAGAGCAAGAAGGTTCTTTGATGAGGCTGAGAAGGGCGTTGCAGAACTGAGTGCAGCCAGTAGATGGCCAGTGTGGGCATCCCTAATGCTTTATAAGCAAATATTGGATTCCATTGAAGCAAATGACTATGACAACTTCACCAAAAGGGCATATGTAGGCAAAGCAAAGAAACTGCTATCACTTCCCATAGCCTTTGGGAGAGCTATGGTGGGCCCTTCAAGCTTCAAAGATTTGGTAACAAGATAG

mRNA sequence

ATGGGGGACACAACTTATGACACCAGAGCGAAGAAGAGCTGTGTGGGCGATTTACGAAGGACCGATGAGCTCGTGGATGGACCTAATGCTTCACACATTACCCCTAAAGCTCTTGAGCGATGGGAAAAACGACTAACTGATCTATTTGAGGGTCGACCGTATGATATGTATGATGCTGCTCTTTCCGATACTGTCTCAAAATACCCTGTTGACATTCAGCCCTTCAAGGACATGATCGAAGGAATGAGGTTGGACCTGCGAAAATCGAGATATGACAACTTTGACGAGCTTTACCTTTATTGCTATTATGTTGCGGGGACTGTGGGGCTCATGAGTGTTCCTGTCATGGGATTGGCACCTGAGTCGAAAGCTTCAGTAGAGAGCGTCTACAATGCAGCATTGGCTCTCGGACTCGCCAATCAACTCACAAACATTCTCAGAGACGTTGGAGAAGATGCTAGGAGGGGAAGAGTGTATCTCCCACAAGACGAGTTGGCACAAGCAGGGCTATGCGACGACGACATATTCCGAGGGAAAGTGACGGACAAGTGGCGGTTTTTCATGAAAGGACAGATAAAAAGAGCAAGAAGGTTCTTTGATGAGGCTGAGAAGGGCGTTGCAGAACTGAGTGCAGCCAGTAGATGGCCAGTGTGGGCATCCCTAATGCTTTATAAGCAAATATTGGATTCCATTGAAGCAAATGACTATGACAACTTCACCAAAAGGGCATATGTAGGCAAAGCAAAGAAACTGCTATCACTTCCCATAGCCTTTGGGAGAGCTATGGTGGGCCCTTCAAGCTTCAAAGATTTGGTAACAAGATAG

Coding sequence (CDS)

ATGGGGGACACAACTTATGACACCAGAGCGAAGAAGAGCTGTGTGGGCGATTTACGAAGGACCGATGAGCTCGTGGATGGACCTAATGCTTCACACATTACCCCTAAAGCTCTTGAGCGATGGGAAAAACGACTAACTGATCTATTTGAGGGTCGACCGTATGATATGTATGATGCTGCTCTTTCCGATACTGTCTCAAAATACCCTGTTGACATTCAGCCCTTCAAGGACATGATCGAAGGAATGAGGTTGGACCTGCGAAAATCGAGATATGACAACTTTGACGAGCTTTACCTTTATTGCTATTATGTTGCGGGGACTGTGGGGCTCATGAGTGTTCCTGTCATGGGATTGGCACCTGAGTCGAAAGCTTCAGTAGAGAGCGTCTACAATGCAGCATTGGCTCTCGGACTCGCCAATCAACTCACAAACATTCTCAGAGACGTTGGAGAAGATGCTAGGAGGGGAAGAGTGTATCTCCCACAAGACGAGTTGGCACAAGCAGGGCTATGCGACGACGACATATTCCGAGGGAAAGTGACGGACAAGTGGCGGTTTTTCATGAAAGGACAGATAAAAAGAGCAAGAAGGTTCTTTGATGAGGCTGAGAAGGGCGTTGCAGAACTGAGTGCAGCCAGTAGATGGCCAGTGTGGGCATCCCTAATGCTTTATAAGCAAATATTGGATTCCATTGAAGCAAATGACTATGACAACTTCACCAAAAGGGCATATGTAGGCAAAGCAAAGAAACTGCTATCACTTCCCATAGCCTTTGGGAGAGCTATGGTGGGCCCTTCAAGCTTCAAAGATTTGGTAACAAGATAG

Protein sequence

MGDTTYDTRAKKSCVGDLRRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDMIEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGLANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRFFDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAFGRAMVGPSSFKDLVTR

Homology

[Close]

BLAST of Lsi07G008170 vs. ExPASy Swiss-Prot
Match: Q9SSU8 (Phytoene synthase, chloroplastic OS=Daucus carota OX=4039 GN=PSY PE=2 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 1.5e-123
Identity = 210/251 (83.67%), Postives = 235/251 (93.63%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKAL+RWEKRL DLF+G+PYDMYDAAL+DTVS YPVDIQPFKDM
Sbjct: 148 RRTDELVDGPNASHITPKALDRWEKRLNDLFDGQPYDMYDAALADTVSTYPVDIQPFKDM 207

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           I+GMR+DL+KSRY  FDELYLYCYYVAGTVGLMSVPVMG+APESKA+ ESVY+AALALG+
Sbjct: 208 IDGMRMDLKKSRYQTFDELYLYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGI 267

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGR+YLPQ+EL  AG+  + IF+GKVTDKWR FMKGQIKRAR F
Sbjct: 268 ANQLTNILRDVGEDARRGRIYLPQEELKLAGITPEYIFKGKVTDKWRSFMKGQIKRARMF 327

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGVAELS+ASRWPVWASL+LYKQILD+IEANDYDNFTKRAYVGKAKKL+SLP+A+
Sbjct: 328 FDEAEKGVAELSSASRWPVWASLLLYKQILDAIEANDYDNFTKRAYVGKAKKLVSLPLAY 387

Query: 259 GRAMVGPSSFK 270
            RA+  PS+ +
Sbjct: 388 SRALFAPSTVR 398

[Close]

BLAST of Lsi07G008170 vs. ExPASy Swiss-Prot
Match: Q5Z5B7 (Phytoene synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSY1 PE=1 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 4.0e-121
Identity = 205/252 (81.35%), Postives = 233/252 (92.46%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITP AL+RWEKRL DLF GRPYDM DAALSDT+SK+P+DIQPF+DM
Sbjct: 166 RRTDELVDGPNASHITPSALDRWEKRLDDLFTGRPYDMLDAALSDTISKFPIDIQPFRDM 225

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMR DLRK+RY NFDELY+YCYYVAGTVGLMSVPVMG+APESKA+ ESVY+AALALG+
Sbjct: 226 IEGMRSDLRKTRYKNFDELYMYCYYVAGTVGLMSVPVMGIAPESKATTESVYSAALALGI 285

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGR+YLPQDELA+AGL D+DIF G VT+KWR FMK QIKRAR F
Sbjct: 286 ANQLTNILRDVGEDARRGRIYLPQDELAEAGLSDEDIFNGVVTNKWRSFMKRQIKRARMF 345

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           F+EAE+GV ELS ASRWPVWASL+LY+QILD IEANDY+NFTKRAYVGKAKKLL+LP+A+
Sbjct: 346 FEEAERGVTELSQASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVGKAKKLLALPVAY 405

Query: 259 GRAMVGPSSFKD 271
           GR+++ P S ++
Sbjct: 406 GRSLLMPYSLRN 417

[Close]

BLAST of Lsi07G008170 vs. ExPASy Swiss-Prot
Match: P49293 (Phytoene synthase, chloroplastic OS=Cucumis melo OX=3656 GN=PSY PE=2 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 9.0e-121
Identity = 208/249 (83.53%), Postives = 231/249 (92.77%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITP AL+RWE RL +LF+GRP+DM DAAL+DTV+K+PVDIQPFKDM
Sbjct: 174 RRTDELVDGPNASHITPTALDRWEARLEELFQGRPFDMLDAALADTVTKFPVDIQPFKDM 233

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMR+DLRKSRY NFDELYLYCYYVAGTVGLMSVPVMG+APES+AS ESVYNAALALG+
Sbjct: 234 IEGMRMDLRKSRYKNFDELYLYCYYVAGTVGLMSVPVMGIAPESQASTESVYNAALALGI 293

Query: 139 ANQL-TNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARR 198
           ANQ   NILRDVGEDARRGR+YLPQDELAQAGL D+DIF G+VTDKWR FMK QIKRAR 
Sbjct: 294 ANQAPPNILRDVGEDARRGRIYLPQDELAQAGLSDEDIFAGRVTDKWRNFMKNQIKRARM 353

Query: 199 FFDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIA 258
           FFDEAEKGV EL+ ASRWPVWASL+LY+QILD IEANDYDNFTKRAYV KAKK+L+LP+A
Sbjct: 354 FFDEAEKGVLELNKASRWPVWASLLLYRQILDEIEANDYDNFTKRAYVSKAKKILALPMA 413

Query: 259 FGRAMVGPS 267
           +GRA++GPS
Sbjct: 414 YGRALLGPS 422

[Close]

BLAST of Lsi07G008170 vs. ExPASy Swiss-Prot
Match: Q6EI12 (Phytoene synthase 2, chloroplastic OS=Zea mays OX=4577 GN=PSY2 PE=1 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 5.8e-120
Identity = 209/247 (84.62%), Postives = 228/247 (92.31%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNAS+ITP AL+RWEKRL DLFEGRPYDMYDAALSDTVSK+PVDIQPFKDM
Sbjct: 156 RRTDELVDGPNASYITPTALDRWEKRLEDLFEGRPYDMYDAALSDTVSKFPVDIQPFKDM 215

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           ++GMRLDL KSRY  FDELYLYCYYVAGTVGLM+VPVMG+AP+SKAS ESVYNAALALG+
Sbjct: 216 VQGMRLDLWKSRYMTFDELYLYCYYVAGTVGLMTVPVMGIAPDSKASTESVYNAALALGI 275

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGR+YLP DELAQAGL ++DIFRGKVT KWR FMKGQI+RAR F
Sbjct: 276 ANQLTNILRDVGEDARRGRIYLPLDELAQAGLTEEDIFRGKVTGKWRRFMKGQIQRARLF 335

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGV  L +ASRWPV ASL LY+QILD+IEANDY+NFTKRAYVGKAKKLLSLP+A+
Sbjct: 336 FDEAEKGVTHLDSASRWPVLASLWLYRQILDAIEANDYNNFTKRAYVGKAKKLLSLPLAY 395

Query: 259 GRAMVGP 266
            RA V P
Sbjct: 396 ARAAVAP 402

[Close]

BLAST of Lsi07G008170 vs. ExPASy Swiss-Prot
Match: Q2QLV9 (Phytoene synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSY2 PE=1 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 7.6e-120
Identity = 209/245 (85.31%), Postives = 229/245 (93.47%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPN+S+ITPKAL+RWEKRL DLFEGRPYDMYDAALSDTVSK+PVDIQPFKDM
Sbjct: 152 RRTDELVDGPNSSYITPKALDRWEKRLEDLFEGRPYDMYDAALSDTVSKFPVDIQPFKDM 211

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDL KSRY +FDELYLYCYYVAGTVGLM+VPVMG+AP+SKAS ESVYNAALALG+
Sbjct: 212 IEGMRLDLWKSRYRSFDELYLYCYYVAGTVGLMTVPVMGIAPDSKASTESVYNAALALGI 271

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGED+RRGR+YLP DELA+AGL ++DIFRGKVTDKWR FMKGQI RAR F
Sbjct: 272 ANQLTNILRDVGEDSRRGRIYLPLDELAEAGLTEEDIFRGKVTDKWRKFMKGQILRARLF 331

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGVA L +ASRWPV ASL LY+QILD+IEANDY+NFTKRAYV KAKKLLSLP+A+
Sbjct: 332 FDEAEKGVAHLDSASRWPVLASLWLYRQILDAIEANDYNNFTKRAYVNKAKKLLSLPVAY 391

Query: 259 GRAMV 264
            RA V
Sbjct: 392 ARAAV 396

[Close]

BLAST of Lsi07G008170 vs. ExPASy TrEMBL
Match: A0A0A0KVC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G063980 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.6e-143
Identity = 253/256 (98.83%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 133 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 192

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY+NFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 193 IEGMRLDLRKSRYENFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 252

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF
Sbjct: 253 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 312

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 313 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 372

Query: 259 GRAMVGPSSFKDLVTR 275
           GRAMVGPS+ KDLVTR
Sbjct: 373 GRAMVGPSNLKDLVTR 388

[Close]

BLAST of Lsi07G008170 vs. ExPASy TrEMBL
Match: T1RK41 (Phytoene synthase 3 OS=Cucumis melo OX=3656 GN=PSY3 PE=3 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.3e-142
Identity = 251/256 (98.05%), Postives = 254/256 (99.22%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 133 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 192

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY++FDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 193 IEGMRLDLRKSRYESFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 252

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF
Sbjct: 253 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 312

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 313 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 372

Query: 259 GRAMVGPSSFKDLVTR 275
           GRAM GPS+ KDLVTR
Sbjct: 373 GRAMAGPSNLKDLVTR 388

[Close]

BLAST of Lsi07G008170 vs. ExPASy TrEMBL
Match: A0A5A7V6T6 (Phytoene synthase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001920 PE=3 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.3e-142
Identity = 251/256 (98.05%), Postives = 254/256 (99.22%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 133 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 192

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY++FDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 193 IEGMRLDLRKSRYESFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 252

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF
Sbjct: 253 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 312

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 313 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 372

Query: 259 GRAMVGPSSFKDLVTR 275
           GRAM GPS+ KDLVTR
Sbjct: 373 GRAMAGPSNLKDLVTR 388

[Close]

BLAST of Lsi07G008170 vs. ExPASy TrEMBL
Match: A0A6J1C461 (phytoene synthase 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111008208 PE=3 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.3e-135
Identity = 239/249 (95.98%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 138 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 197

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY+NFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 198 IEGMRLDLRKSRYENFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 257

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVT+KWR FMKGQIKRARR 
Sbjct: 258 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTEKWRSFMKGQIKRARRL 317

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAE+G+ EL+AASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 318 FDEAEEGIGELNAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 377

Query: 259 GRAMVGPSS 268
           GRA+VGPS+
Sbjct: 378 GRAVVGPST 386

[Close]

BLAST of Lsi07G008170 vs. ExPASy TrEMBL
Match: U3L2Q6 (Phytoene synthase OS=Cucurbita pepo OX=3663 GN=PSYC PE=2 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 6.2e-133
Identity = 236/251 (94.02%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGR YDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 139 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRAYDMYDAALSDTVSKYPVDIQPFKDM 198

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY+NFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 199 IEGMRLDLRKSRYENFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 258

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVT+KWR FMKGQIKRAR F
Sbjct: 259 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTEKWRSFMKGQIKRARMF 318

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKG+ EL+ ASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 319 FDEAEKGIGELNGASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 378

Query: 259 GRAMVGPSSFK 270
           G+A+V P   K
Sbjct: 379 GKAVVAPQISK 389

[Close]

BLAST of Lsi07G008170 vs. NCBI nr
Match: XP_004147748.1 (phytoene synthase 2, chloroplastic [Cucumis sativus] >KGN53515.1 hypothetical protein Csa_015349 [Cucumis sativus])

HSP 1 Score: 516.5 bits (1329), Expect = 1.4e-142
Identity = 253/256 (98.83%), Postives = 255/256 (99.61%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 133 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 192

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY+NFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 193 IEGMRLDLRKSRYENFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 252

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF
Sbjct: 253 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 312

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 313 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 372

Query: 259 GRAMVGPSSFKDLVTR 275
           GRAMVGPS+ KDLVTR
Sbjct: 373 GRAMVGPSNLKDLVTR 388

[Close]

BLAST of Lsi07G008170 vs. NCBI nr
Match: XP_008451831.1 (PREDICTED: phytoene synthase 2, chloroplastic [Cucumis melo] >AGJ74527.1 phytoene synthase 3 [Cucumis melo] >KAA0062944.1 phytoene synthase 2 [Cucumis melo var. makuwa] >TYK16398.1 phytoene synthase 2 [Cucumis melo var. makuwa])

HSP 1 Score: 513.1 bits (1320), Expect = 1.5e-141
Identity = 251/256 (98.05%), Postives = 254/256 (99.22%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 133 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 192

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY++FDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 193 IEGMRLDLRKSRYESFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 252

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF
Sbjct: 253 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 312

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 313 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 372

Query: 259 GRAMVGPSSFKDLVTR 275
           GRAM GPS+ KDLVTR
Sbjct: 373 GRAMAGPSNLKDLVTR 388

[Close]

BLAST of Lsi07G008170 vs. NCBI nr
Match: XP_038874358.1 (LOW QUALITY PROTEIN: phytoene synthase 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 500.4 bits (1287), Expect = 1.0e-137
Identity = 245/251 (97.61%), Postives = 248/251 (98.80%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 133 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 192

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY+NFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 193 IEGMRLDLRKSRYENFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 252

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCD+DIFRGKVTDKWRFFMKGQIKRARRF
Sbjct: 253 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDEDIFRGKVTDKWRFFMKGQIKRARRF 312

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 313 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 372

Query: 259 GRAMVGPSSFK 270
           GRAMV P + K
Sbjct: 373 GRAMVAPQASK 383

[Close]

BLAST of Lsi07G008170 vs. NCBI nr
Match: XP_022136530.1 (phytoene synthase 2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 491.5 bits (1264), Expect = 4.7e-135
Identity = 239/249 (95.98%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 138 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 197

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY+NFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 198 IEGMRLDLRKSRYENFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 257

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVT+KWR FMKGQIKRARR 
Sbjct: 258 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTEKWRSFMKGQIKRARRL 317

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAE+G+ EL+AASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 318 FDEAEEGIGELNAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 377

Query: 259 GRAMVGPSS 268
           GRA+VGPS+
Sbjct: 378 GRAVVGPST 386

[Close]

BLAST of Lsi07G008170 vs. NCBI nr
Match: KAG6600459.1 (Phytoene synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 484.2 bits (1245), Expect = 7.5e-133
Identity = 236/251 (94.02%), Postives = 243/251 (96.81%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITPKALERWEKRLTDLFEGR YDMYDAALSDTVSKYPVDIQPFKDM
Sbjct: 132 RRTDELVDGPNASHITPKALERWEKRLTDLFEGRAYDMYDAALSDTVSKYPVDIQPFKDM 191

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMRLDLRKSRY+NFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL
Sbjct: 192 IEGMRLDLRKSRYENFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 251

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVT+KWR FMKGQIKRAR+F
Sbjct: 252 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTEKWRSFMKGQIKRARKF 311

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKG+ EL+ ASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF
Sbjct: 312 FDEAEKGIGELNEASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 371

Query: 259 GRAMVGPSSFK 270
           G+A+V P   K
Sbjct: 372 GKAVVAPQISK 382

[Close]

BLAST of Lsi07G008170 vs. TAIR 10
Match: AT5G17230.1 (PHYTOENE SYNTHASE )

HSP 1 Score: 427.2 bits (1097), Expect = 1.0e-119
Identity = 202/249 (81.12%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITP AL+RWE RL DLF GRP+DM DAAL+DTV++YPVDIQPF+DM
Sbjct: 169 RRTDELVDGPNASHITPMALDRWEARLEDLFRGRPFDMLDAALADTVARYPVDIQPFRDM 228

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMR+DL+KSRY NFD+LYLYCYYVAGTVGLMSVPVMG+ P+SKA+ ESVYNAALALG+
Sbjct: 229 IEGMRMDLKKSRYQNFDDLYLYCYYVAGTVGLMSVPVMGIDPKSKATTESVYNAALALGI 288

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGL D+DIF GKVTDKWR FMK Q+KRAR F
Sbjct: 289 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMF 348

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGV ELSAASRWPVWASL+LY++ILD IEANDY+NFTKRAYVGK KK+ +LP+A+
Sbjct: 349 FDEAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAY 408

Query: 259 GRAMVGPSS 268
            ++++  SS
Sbjct: 409 AKSVLKTSS 417

[Close]

BLAST of Lsi07G008170 vs. TAIR 10
Match: AT5G17230.2 (PHYTOENE SYNTHASE )

HSP 1 Score: 427.2 bits (1097), Expect = 1.0e-119
Identity = 202/249 (81.12%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITP AL+RWE RL DLF GRP+DM DAAL+DTV++YPVDIQPF+DM
Sbjct: 169 RRTDELVDGPNASHITPMALDRWEARLEDLFRGRPFDMLDAALADTVARYPVDIQPFRDM 228

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMR+DL+KSRY NFD+LYLYCYYVAGTVGLMSVPVMG+ P+SKA+ ESVYNAALALG+
Sbjct: 229 IEGMRMDLKKSRYQNFDDLYLYCYYVAGTVGLMSVPVMGIDPKSKATTESVYNAALALGI 288

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGL D+DIF GKVTDKWR FMK Q+KRAR F
Sbjct: 289 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMF 348

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGV ELSAASRWPVWASL+LY++ILD IEANDY+NFTKRAYVGK KK+ +LP+A+
Sbjct: 349 FDEAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAY 408

Query: 259 GRAMVGPSS 268
            ++++  SS
Sbjct: 409 AKSVLKTSS 417

[Close]

BLAST of Lsi07G008170 vs. TAIR 10
Match: AT5G17230.3 (PHYTOENE SYNTHASE )

HSP 1 Score: 427.2 bits (1097), Expect = 1.0e-119
Identity = 202/249 (81.12%), Postives = 229/249 (91.97%), Query Frame = 0


Query: 19  RRTDELVDGPNASHITPKALERWEKRLTDLFEGRPYDMYDAALSDTVSKYPVDIQPFKDM 78
           RRTDELVDGPNASHITP AL+RWE RL DLF GRP+DM DAAL+DTV++YPVDIQPF+DM
Sbjct: 184 RRTDELVDGPNASHITPMALDRWEARLEDLFRGRPFDMLDAALADTVARYPVDIQPFRDM 243

Query: 79  IEGMRLDLRKSRYDNFDELYLYCYYVAGTVGLMSVPVMGLAPESKASVESVYNAALALGL 138
           IEGMR+DL+KSRY NFD+LYLYCYYVAGTVGLMSVPVMG+ P+SKA+ ESVYNAALALG+
Sbjct: 244 IEGMRMDLKKSRYQNFDDLYLYCYYVAGTVGLMSVPVMGIDPKSKATTESVYNAALALGI 303

Query: 139 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLCDDDIFRGKVTDKWRFFMKGQIKRARRF 198
           ANQLTNILRDVGEDARRGRVYLPQDELAQAGL D+DIF GKVTDKWR FMK Q+KRAR F
Sbjct: 304 ANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIFAGKVTDKWRNFMKMQLKRARMF 363

Query: 199 FDEAEKGVAELSAASRWPVWASLMLYKQILDSIEANDYDNFTKRAYVGKAKKLLSLPIAF 258
           FDEAEKGV ELSAASRWPVWASL+LY++ILD IEANDY+NFTKRAYVGK KK+ +LP+A+
Sbjct: 364 FDEAEKGVTELSAASRWPVWASLLLYRRILDEIEANDYNNFTKRAYVGKVKKIAALPLAY 423

Query: 259 GRAMVGPSS 268
            ++++  SS
Sbjct: 424 AKSVLKTSS 432

The following BLAST results are available for this feature:

BLAST of Lsi07G008170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSU8	1.5e-123	83.67	Phytoene synthase, chloroplastic OS=Daucus carota OX=4039 GN=PSY PE=2 SV=1	[more]
Q5Z5B7	4.0e-121	81.35	Phytoene synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=P...	[more]
P49293	9.0e-121	83.53	Phytoene synthase, chloroplastic OS=Cucumis melo OX=3656 GN=PSY PE=2 SV=1	[more]
Q6EI12	5.8e-120	84.62	Phytoene synthase 2, chloroplastic OS=Zea mays OX=4577 GN=PSY2 PE=1 SV=1	[more]
Q2QLV9	7.6e-120	85.31	Phytoene synthase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=P...	[more]

BLAST of Lsi07G008170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVC2	6.6e-143	98.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G063980 PE=3 SV=1	[more]
T1RK41	7.3e-142	98.05	Phytoene synthase 3 OS=Cucumis melo OX=3656 GN=PSY3 PE=3 SV=1	[more]
A0A5A7V6T6	7.3e-142	98.05	Phytoene synthase 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G0...	[more]
A0A6J1C461	2.3e-135	95.98	phytoene synthase 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
U3L2Q6	6.2e-133	94.02	Phytoene synthase OS=Cucurbita pepo OX=3663 GN=PSYC PE=2 SV=1	[more]

BLAST of Lsi07G008170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147748.1	1.4e-142	98.83	phytoene synthase 2, chloroplastic [Cucumis sativus] >KGN53515.1 hypothetical pr...	[more]
XP_008451831.1	1.5e-141	98.05	PREDICTED: phytoene synthase 2, chloroplastic [Cucumis melo] >AGJ74527.1 phytoen...	[more]
XP_038874358.1	1.0e-137	97.61	LOW QUALITY PROTEIN: phytoene synthase 2, chloroplastic-like [Benincasa hispida]	[more]
XP_022136530.1	4.7e-135	95.98	phytoene synthase 2, chloroplastic-like [Momordica charantia]	[more]
KAG6600459.1	7.5e-133	94.02	Phytoene synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Lsi07G008170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17230.1	1.0e-119	81.12	PHYTOENE SYNTHASE	[more]
AT5G17230.2	1.0e-119	81.12	PHYTOENE SYNTHASE	[more]
AT5G17230.3	1.0e-119	81.12	PHYTOENE SYNTHASE	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 17..255 e-value: 1.8E-73 score: 249.2
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 18..262
IPR002060	Squalene/phytoene synthase	PFAM	PF00494	SQS_PSY	coord: 19..247 e-value: 7.4E-59 score: 199.4
IPR002060	Squalene/phytoene synthase	SFLD	SFLDG01018	Squalene/Phytoene_Synthase_Li	coord: 19..259 e-value: 0.0 score: 258.0
IPR044843	Trans-isoprenyl diphosphate synthases, bacterial-type	SFLD	SFLDG01212	Phytoene_synthase_like	coord: 19..259 e-value: 0.0 score: 258.0
IPR044843	Trans-isoprenyl diphosphate synthases, bacterial-type	PANTHER	PTHR31480	BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE	coord: 18..269
None	No IPR available	PANTHER	PTHR31480:SF22	BIFUNCTIONAL 15-CIS-PHYTOENE SYNTHASE, CHROMOPLASTIC-RELATED	coord: 18..269
IPR019845	Squalene/phytoene synthase, conserved site	PROSITE	PS01044	SQUALEN_PHYTOEN_SYN_1	coord: 100..115
IPR019845	Squalene/phytoene synthase, conserved site	PROSITE	PS01045	SQUALEN_PHYTOEN_SYN_2	coord: 136..161
IPR033904	Trans-isoprenyl diphosphate synthases, head-to-head	CDD	cd00683	Trans_IPPS_HH	coord: 18..250 e-value: 2.32494E-90 score: 266.793

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G008170.1	Lsi07G008170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016120	carotene biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0010287	plastoglobule
molecular_function	GO:0046905	15-cis-phytoene synthase activity
molecular_function	GO:0004311	farnesyltranstransferase activity
molecular_function	GO:0016767	geranylgeranyl-diphosphate geranylgeranyltransferase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups