Lsi07G008030 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G008030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L27
Location	chr07: 8914204 .. 8914611 (-)
RNA-Seq Expression	Lsi07G008030
Synteny	Lsi07G008030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGTTCCTCAAGCCGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTATGCCGGCCGGAAGGCGGTCATCATTCGTGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTAGTCGCCGGAATCAAAAAGTACCCGGCCAAGGTCATCCGCAAGGACTCCGCCAAGAAGACCGCTAAGAAATCCCGAGTCAAGGCCTTCATCAAGCTCGTCAATTACAGGCACCTCATGCCCACCAGGTACACTCTCGATGTCGATCTTAAAGACGTTGTGACTGTCGATGCTTTACAATCGTTGGACAAGAGGGTCACCGCCGCCAAGGAGACCAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA

mRNA sequence

ATGGTGAAGTTCCTCAAGCCGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTATGCCGGCCGGAAGGCGGTCATCATTCGTGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTAGTCGCCGGAATCAAAAAGTACCCGGCCAAGGTCATCCGCAAGGACTCCGCCAAGAAGACCGCTAAGAAATCCCGAGTCAAGGCCTTCATCAAGCTCGTCAATTACAGGCACCTCATGCCCACCAGGTACACTCTCGATGTCGATCTTAAAGACGTTGTGACTGTCGATGCTTTACAATCGTTGGACAAGAGGGTCACCGCCGCCAAGGAGACCAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA

Coding sequence (CDS)

ATGGTGAAGTTCCTCAAGCCGAACAAAGCCGTCATCGTCCTTCAAGGCCGTTATGCCGGCCGGAAGGCGGTCATCATTCGTGCCTTCGACGACGGAACTCGGGATCGGGCTTATGGCCACTGCTTAGTCGCCGGAATCAAAAAGTACCCGGCCAAGGTCATCCGCAAGGACTCCGCCAAGAAGACCGCTAAGAAATCCCGAGTCAAGGCCTTCATCAAGCTCGTCAATTACAGGCACCTCATGCCCACCAGGTACACTCTCGATGTCGATCTTAAAGACGTTGTGACTGTCGATGCTTTACAATCGTTGGACAAGAGGGTCACCGCCGCCAAGGAGACCAAGAAGAGGTTCGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA

Protein sequence

MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEERFKTGKNRWFFTKLRF

Homology

[Close]

BLAST of Lsi07G008030 vs. ExPASy Swiss-Prot
Match: Q05462 (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-59
Identity = 113/135 (83.70%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDSAK
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D LQS DK+VTA KETKK  EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. ExPASy Swiss-Prot
Match: Q8LCL3 (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 113/135 (83.70%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DAL+S DK+VTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. ExPASy Swiss-Prot
Match: P51419 (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 113/135 (83.70%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DALQS DK+V A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. ExPASy Swiss-Prot
Match: Q9SKX8 (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-54
Identity = 102/135 (75.56%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVK +KP KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ DA+ S DK+VTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. ExPASy Swiss-Prot
Match: P41101 (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-53
Identity = 109/139 (78.42%), Postives = 118/139 (84.89%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           M KFLKPNKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDSAK
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVTVDALQSLDKRVTAAKETKKR 120
           K  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV  D LQ+ DK+VT A+ TK R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 121 FEERFKTGKNRWFFTKLRF 136
             ERFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]

BLAST of Lsi07G008030 vs. ExPASy TrEMBL
Match: A0A0A0KVB4 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G062360 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVD+LQS DK+VTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. ExPASy TrEMBL
Match: A0A0A0KXF9 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G061860 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.6e-65
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+D+LQS DK+VTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. ExPASy TrEMBL
Match: A0A5A7V5M7 (60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002210 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.1e-65
Identity = 130/135 (96.30%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D+LQS DK+V+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. ExPASy TrEMBL
Match: A0A1S3BT89 (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493014 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.1e-65
Identity = 130/135 (96.30%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D+LQS DK+V+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. ExPASy TrEMBL
Match: A0A1S3BSF6 (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493018 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.0e-64
Identity = 128/135 (94.81%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+D+LQS DK+V+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. NCBI nr
Match: XP_004147740.1 (60S ribosomal protein L27 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVD+LQS DK+VTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. NCBI nr
Match: KAE8649234.1 (hypothetical protein Csa_014974 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 29  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 88

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVD+LQS DK+VTAAKETKKRFEER
Sbjct: 89  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDSLQSKDKKVTAAKETKKRFEER 148

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 149 FKTGKNRWFFTKLRF 163

[Close]

BLAST of Lsi07G008030 vs. NCBI nr
Match: XP_004147739.1 (60S ribosomal protein L27 [Cucumis sativus] >KGN53499.1 hypothetical protein Csa_014739 [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 7.4e-65
Identity = 129/135 (95.56%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+D+LQS DK+VTAAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. NCBI nr
Match: XP_008451849.1 (PREDICTED: 60S ribosomal protein L27-like [Cucumis melo] >KAA0062918.1 60S ribosomal protein L27-like [Cucumis melo var. makuwa] >TYK16424.1 60S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 130/135 (96.30%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+D+LQS DK+V+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. NCBI nr
Match: XP_008451854.1 (PREDICTED: 60S ribosomal protein L27 [Cucumis melo] >XP_008451855.1 PREDICTED: 60S ribosomal protein L27 [Cucumis melo] >KAA0062915.1 60S ribosomal protein L27 [Cucumis melo var. makuwa] >TYK16427.1 60S ribosomal protein L27 [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.1e-64
Identity = 128/135 (94.81%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIVLQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVKAF+KLVNYRHLMPTRYTLDVDLKDVVT+D+LQS DK+V+AAKETKKRFEER
Sbjct: 61  KTAKKSRVKAFVKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVSAAKETKKRFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. TAIR 10
Match: AT3G22230.1 (Ribosomal L27e protein family )

HSP 1 Score: 227.3 bits (578), Expect = 7.6e-60
Identity = 113/135 (83.70%), Postives = 125/135 (92.59%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DAL+S DK+VTA KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. TAIR 10
Match: AT4G15000.1 (Ribosomal L27e protein family )

HSP 1 Score: 227.3 bits (578), Expect = 7.6e-60
Identity = 113/135 (83.70%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DALQS DK+V A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. TAIR 10
Match: AT2G32220.1 (Ribosomal L27e protein family )

HSP 1 Score: 213.8 bits (543), Expect = 8.7e-56
Identity = 102/135 (75.56%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVK +KP KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ DA+ S DK+VTA KE K +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of Lsi07G008030 vs. TAIR 10
Match: AT4G15000.2 (Ribosomal L27e protein family )

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-52
Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = 0


Query: 1   MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAK 60
           MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTVDALQSLDKRVTAAKETKKRFEER 120
           KTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+DALQS DK+V A KE K + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKT 124
           FKT
Sbjct: 121 FKT 123

The following BLAST results are available for this feature:

BLAST of Lsi07G008030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05462	1.7e-59	83.70	60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1	[more]
Q8LCL3	1.1e-58	83.70	60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2	[more]
P51419	1.1e-58	83.70	60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2	[more]
Q9SKX8	1.2e-54	75.56	60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1	[more]
P41101	2.3e-53	78.42	60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1	[more]

BLAST of Lsi07G008030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVB4	1.6e-65	97.78	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G062360 PE=3 SV=1	[more]
A0A0A0KXF9	3.6e-65	95.56	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G061860 PE=3 SV=1	[more]
A0A5A7V5M7	6.1e-65	96.30	60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BT89	6.1e-65	96.30	60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493014 PE=3 SV=1	[more]
A0A1S3BSF6	1.0e-64	94.81	60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103493018 PE=3 SV=1	[more]

BLAST of Lsi07G008030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147740.1	3.3e-65	97.78	60S ribosomal protein L27 [Cucumis sativus]	[more]
KAE8649234.1	3.3e-65	97.78	hypothetical protein Csa_014974 [Cucumis sativus]	[more]
XP_004147739.1	7.4e-65	95.56	60S ribosomal protein L27 [Cucumis sativus] >KGN53499.1 hypothetical protein Csa...	[more]
XP_008451849.1	1.3e-64	96.30	PREDICTED: 60S ribosomal protein L27-like [Cucumis melo] >KAA0062918.1 60S ribos...	[more]
XP_008451854.1	2.1e-64	94.81	PREDICTED: 60S ribosomal protein L27 [Cucumis melo] >XP_008451855.1 PREDICTED: 6...	[more]

BLAST of Lsi07G008030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22230.1	7.6e-60	83.70	Ribosomal L27e protein family	[more]
AT4G15000.1	7.6e-60	83.70	Ribosomal L27e protein family	[more]
AT2G32220.1	8.7e-56	75.56	Ribosomal L27e protein family	[more]
AT4G15000.2	3.4e-52	82.11	Ribosomal L27e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	PANTHER	PTHR10497:SF16	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR038655	Ribosomal protein L27e superfamily	GENE3D	2.30.30.770		coord: 1..135 e-value: 3.6E-60 score: 204.0
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..135 e-value: 7.8E-32 score: 109.5
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR018262	Ribosomal protein L27e, conserved site	PROSITE	PS01107	RIBOSOMAL_L27E	coord: 124..135
IPR041991	Eukaryotic Ribosomal Protein L27, KOW domain	CDD	cd06090	KOW_RPL27	coord: 6..88 e-value: 6.60828E-42 score: 131.922
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 2..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G008030.1	Lsi07G008030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome