Lsi07G005940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G005940
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEpidermal patterning factor-like protein
Locationchr07: 6321306 .. 6324329 (-)
RNA-Seq ExpressionLsi07G005940
SyntenyLsi07G005940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAAACGAGCTTCTCTCTGGTTTTTTCATGGATTTGATGATACACCGTTTTATGTTTGAGGGTCGAATCCTATGGCCGAAATTCTAAAGCTGGGTCCTGGTATTCCCTAATCCAAAGCCGTTGAGGGAAATCACCATGATTTTAATGGATGGTCAAAAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGTGAAAGAAAATGTAGCAGATCGAATAATCAAATCACTCAAATCTCGCGGATATCAATAAGAAATCCCCAGACGATATTGAACAGGACAAAGCTTACTTGAAAACGTACAATCGGTGCATTTGATGCTTAAAGTACCTTCTGTGCTTATCCATTTTCATCGATTTATTTTTGTCTCTGTTCTTTTTTTTTTTTTTTTTTTTTTAAAAATCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTACAAAATCCTCTCATTTTCGCATTATACACATCCCCATCGAGCCGCTTGAACAGTGATTCAGTGCCCCTTTCTTTGTCCTTTCTAGTCAGAGAGACCACTAATTAGTGCCTGCCATGTGTTTGATAATTTGCCTGTGTGACTTTTTTAGCCTAAGGCTTACTTCCCAGGTTTTAATTTTGACATCATTCTATCACATTTCTCCAGATAGAGTCAAATAAGCGATTATAATTTCATTTGGGGTGTTAAGAATTGCTATCTTGAATCTTGGGTGTGTAGACAGAGAGACCACTAATTAGTGTCTGTCATGTGACAGTTGAGCCTAAGGCTTGCTTCCCATGTTTTAAGTTTGACATCGTTCATCACACTCCTCCAAATAGAGTCAAATAAATGATTAAACTTTCGTTTGGGGTGTTAAGAATTGCTATCATGAATATTGGGTAAGTAGAAAGAATATGTGTCATATAAGCTTGATCCATGGAGAATGTGGTGGTGACTGGGGGAAACAGGCAAATTTGAGTGTGATAGTTTTGGTGTGGATTAATTCTAACGTCATTTATTGCTTACAAATTGGGACCCTCCACACCCCAACGGCTCTTGATTGTCCATCTTGGTTATAAGCTAAATGAATGGCTGAGATTGGATTTGGAGCAGCATTTTATTATGTTCTCAACCTACTAATCTGTAAAAGGTTGACCCCATTTGAAGTACCTTATTTAATTTATTAACTAACTCAATAAAATTTTCTGCAGGGCTGAATGTGCTCAGAACCTCAGACATTGATGCCTTTTTCCTTCTTTTGCATAAATAGCTCTCTGTCACTGGATCTTTTCTTCTTTAAATAGGAATAAAACTATCAGAGTGAAATAAAGACCCTGCAGTCTTGGTAGCTTGTATTTTTTTTTTTCTTGTGAATATTTACATTGCTTCTGCAGGTATGGCAGAGCCTAGAAAAAAAAAAAAAGGGAGGTGGCTGTTATGCTGGGGCCTGCCCTTGTAGGGATCACTGTATTGGTTCATTTACTAGACTGATTTGGCAGTGAGTGAAAGAGAGAGGCTGGATCTTATTGGAAGGCGACAAAATCAATAAAAGAAGAAGAAAAAAGGGGATTTCAACAGCTCATTTCTTGCACTCTTGCAATTGCAAGGTTCTCTTCTCTATGTCCATGGTGAGTTGTCAAATGATATGAGGTGGAGTGGAGAGACTTTGCTTTGCTTTGCTTCAGAATTCTTTGATAATAAACAGGAATCGATCACTTGTTTGTAACGCAAAATCTATCTGCCAGTCCTAAGCTAGACCCTGGAAGATTAAGAAACCAAACCAAACAAAACAAAACAATATATGTATAGAGATAGAGAGAGAGGCTCTGACTTAGGGTACGGGGATATGTGAACCTGCTTCTTAGGCTTAAGTTTCCTTTACCTTCTTAATTCTTATAACCCAAATCATTTTCCATTTTTTCCATTCACCATCTCATTCCACCATAATCATCATTATCATTTTGGCTTTTGAAGACATGAAAGCAGCATACTGGTGTTTTATATTGATTCTGCAATTAACCTGTTGGGTTTCTGCTGCAGCCAGAACTTTTGCTCCAAATCATGCTCTCCTTCCTCATAAACAACAAGGTTTGTTAGTCACCAACATACTTAGATTTTTTTTTTTCTCTTTTCCTTTCTGGCTTTCTCATTCCAATTATTACATCTACTTAGCCATAGGTCTGCCTTTTTAACTCAACTTGCTTGTTGTTTTGTTGCTACCAGGTCTTATCTCAGGCTCTTTGGATTCAAAAGAGGTCAGCCCCCCTCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCTCTTATCTTTTTTGTATGTGCTCTGTTTGGTGAAATAATTCATTTTTGCTCTCTGTAAAGGCTGTTAAAGGTGTAAATGAAGAAGCATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCGCCAAGCTGTGAGCACAAATGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACCATCAACAGGCGCAGCCATGTGGGGGTCCAATACACTAACTATGAACCTGAGGGATGGAAATGCAAGTGTGGCCCTTCCTTTTACAGCCCTTGATTCTAAATCTTAGAGGGAAAAGAACAAAAACTATAGAATAAAAAATAAACCTTCCTTTTTTCATCATTTTCTTTGGATTTTGCATCATTTCATCCCACTGTATAGAAGTTTTTAATTCAAAGTTAGTTTCGAATACCTATGATGTTCAATGTTAGTTTTAGAAAAGTAGATAATTAAGGCGTTGTTTAGTGACAATGTTGTTTTTAGTTTTTGAAAATTAAGCTTAATTTCTCATAATTTCTTACC

mRNA sequence

CACAAACGAGCTTCTCTCTGGTTTTTTCATGGATTTGATGATACACCGTTTTATGTTTGAGGGTCGAATCCTATGGCCGAAATTCTAAAGCTGGGTCCTGGTATTCCCTAATCCAAAGCCGTTGAGGGAAATCACCATGATTTTAATGGATGGTCAAAAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGTGAAAGAAAATGTAGCAGATCGAATAATCAAATCACTCAAATCTCGCGGATATCAATAAGAAATCCCCAGACGATATTGAACAGGACAAAGCTTACTTGAAAACGTACAATCGGTGCATTTGATGCTTAAAGTATGGCAGAGCCTAGAAAAAAAAAAAAAGGGAGGTGGCTGTTATGCTGGGGCCTGCCCTTGTAGGGATCACTGTATTGGTTCATTTACTAGACTGATTTGGCAGTGAGTGAAAGAGAGAGGCTGGATCTTATTGGAAGGCGACAAAATCAATAAAAGAAGAAGAAAAAAGGGGATTTCAACAGCTCATTTCTTGCACTCTTGCAATTGCAAGGTTCTCTTCTCTATGTCCATGGTGAGTTGTCAAATGATATGAGGTGGAGTGGAGAGACTTTGCTTTGCTTTGCTTCAGAATTCTTTGATAATAAACAGGAATCGATCACTTGTTTGTAACGCAAAATCTATCTGCCAGTCCTAAGCTAGACCCTGGAAGATTAAGAAACCAAACCAAACAAAACAAAACAATATATGTATAGAGATAGAGAGAGAGGCTCTGACTTAGGGTACGGGGATATGTGAACCTGCTTCTTAGGCTTAAGTTTCCTTTACCTTCTTAATTCTTATAACCCAAATCATTTTCCATTTTTTCCATTCACCATCTCATTCCACCATAATCATCATTATCATTTTGGCTTTTGAAGACATGAAAGCAGCATACTGGTGTTTTATATTGATTCTGCAATTAACCTGTTGGGTTTCTGCTGCAGCCAGAACTTTTGCTCCAAATCATGCTCTCCTTCCTCATAAACAACAAGGTCTTATCTCAGGCTCTTTGGATTCAAAAGAGGCTGTTAAAGGTGTAAATGAAGAAGCATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCGCCAAGCTGTGAGCACAAATGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACCATCAACAGGCGCAGCCATGTGGGGGTCCAATACACTAACTATGAACCTGAGGGATGGAAATGCAAGTGTGGCCCTTCCTTTTACAGCCCTTGATTCTAAATCTTAGAGGGAAAAGAACAAAAACTATAGAATAAAAAATAAACCTTCCTTTTTTCATCATTTTCTTTGGATTTTGCATCATTTCATCCCACTGTATAGAAGTTTTTAATTCAAAGTTAGTTTCGAATACCTATGATGTTCAATGTTAGTTTTAGAAAAGTAGATAATTAAGGCGTTGTTTAGTGACAATGTTGTTTTTAGTTTTTGAAAATTAAGCTTAATTTCTCATAATTTCTTACC

Coding sequence (CDS)

ATGAAAGCAGCATACTGGTGTTTTATATTGATTCTGCAATTAACCTGTTGGGTTTCTGCTGCAGCCAGAACTTTTGCTCCAAATCATGCTCTCCTTCCTCATAAACAACAAGGTCTTATCTCAGGCTCTTTGGATTCAAAAGAGGCTGTTAAAGGTGTAAATGAAGAAGCATTCTATAGAGGGATGAGGAAAATAGGGTCAAGTCCGCCAAGCTGTGAGCACAAATGCTATGGATGCATTCCATGTGAAGCCATTCAAGTGCCTACCATCAACAGGCGCAGCCATGTGGGGGTCCAATACACTAACTATGAACCTGAGGGATGGAAATGCAAGTGTGGCCCTTCCTTTTACAGCCCTTGA

Protein sequence

MKAAYWCFILILQLTCWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAVKGVNEEAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCGPSFYSP
Homology
[Close]
BLAST of Lsi07G005940 vs. ExPASy Swiss-Prot
Match: C4B8C4 (EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EPFL3 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-18
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 54  NEEAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCG 113
           N+E   +  R+IGS PPSCE KCYGC PCEAIQ PTI+   H+   Y NY+PEGW+C C 
Sbjct: 46  NKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISSIPHLSPHYANYQPEGWRCHCP 105

Query: 114 P 115
           P
Sbjct: 106 P 106

[Close]
BLAST of Lsi07G005940 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-11
Identity = 32/76 (42.11%), Postives = 41/76 (53.95%), Query Frame = 0 

Query: 64  KIGSSPPSCEHKCYGCIPCEAIQVPTINRRSH--------------------VGVQYTNY 120
           ++GS+PPSC ++C  C PC AIQVPT+  RS                     V  QY+NY
Sbjct: 47  RLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNY 106

[Close]
BLAST of Lsi07G005940 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-08
Identity = 28/66 (42.42%), Postives = 33/66 (50.00%), Query Frame = 0 

Query: 55  EEAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYT-NYEPEGWKCKCG 114
           E    R +R +GSSPP C  KC  C PC+ + VP        G   T  Y PE W+CKCG
Sbjct: 96  EAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPV-----PPGTPVTAEYYPEAWRCKCG 155

Query: 115 PSFYSP 120
              Y P
Sbjct: 156 NKLYMP 156

[Close]
BLAST of Lsi07G005940 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.4e-06
Identity = 23/54 (42.59%), Postives = 28/54 (51.85%), Query Frame = 0 

Query: 66  GSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCGPSFYSP 120
           GSSPP+C  KC  C PC+ + VP     S        Y PE W+CKCG   + P
Sbjct: 60  GSSPPTCRSKCGKCQPCKPVHVPIQPGLS----MPLEYYPEAWRCKCGNKLFMP 109

[Close]
BLAST of Lsi07G005940 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-05
Identity = 22/54 (40.74%), Postives = 27/54 (50.00%), Query Frame = 0 

Query: 66  GSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCGPSFYSP 120
           GS PP C  KC  C PC+A+ VP         +    Y PE W+CKCG   + P
Sbjct: 58  GSVPPMCRLKCGKCEPCKAVHVPI----QPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]
BLAST of Lsi07G005940 vs. ExPASy TrEMBL
Match: A0A1S3BIS6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 100/120 (83.33%), Postives = 105/120 (87.50%), Query Frame = 0 

Query: 1   MKAAYWCFILILQLTCWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAVKGVNEEAFYR 60
           MK  YWCFI ILQL CWVSAAARTFAPN ALLPHKQ     G ++SK+AVKG+ EE FYR
Sbjct: 1   MKGTYWCFIFILQLVCWVSAAARTFAPNPALLPHKQ-----GLIESKQAVKGIKEEEFYR 60

Query: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVP-TINRRSHVGVQYTNYEPEGWKCKCGPSFYSP 120
           GMRKIGSSPPSCEHKCYGCIPCEAIQVP T NRRSH+GVQYTNYEPEGWKCKCGPSFYSP
Sbjct: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHIGVQYTNYEPEGWKCKCGPSFYSP 115

[Close]
BLAST of Lsi07G005940 vs. ExPASy TrEMBL
Match: A0A5D3BVF6 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00550 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 100/120 (83.33%), Postives = 105/120 (87.50%), Query Frame = 0 

Query: 1   MKAAYWCFILILQLTCWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAVKGVNEEAFYR 60
           MK  YWCFI ILQL CWVSAAARTFAPN ALLPHKQ     G ++SK+AVKG+ EE FYR
Sbjct: 1   MKGTYWCFIFILQLVCWVSAAARTFAPNPALLPHKQ-----GLIESKQAVKGIKEEEFYR 60

Query: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVP-TINRRSHVGVQYTNYEPEGWKCKCGPSFYSP 120
           GMRKIGSSPPSCEHKCYGCIPCEAIQVP T NRRSH+GVQYTNYEPEGWKCKCGPSFYSP
Sbjct: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHIGVQYTNYEPEGWKCKCGPSFYSP 115

[Close]
BLAST of Lsi07G005940 vs. ExPASy TrEMBL
Match: A0A6J1DIF6 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111020335 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.2e-45
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0 

Query: 1   MKAAYWCFILILQL--TCWVSAAARTFAPNHA--LLPHKQQGLISGSLDSKEAVKGVNEE 60
           MK  + CFIL LQ+  +CWVSAA R FAPNHA  LLPHK QGLISGS DSKE  + VN  
Sbjct: 1   MKGTFCCFILTLQIACSCWVSAATRPFAPNHALPLLPHK-QGLISGSFDSKEGFEAVN-- 60

Query: 61  AFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCGPSF 120
              RGMR+IGSSPPSC+HKCYGC PCEAIQVPT +R SH+GVQYTNYEPEGWKCKCGPSF
Sbjct: 61  ---RGMREIGSSPPSCQHKCYGCSPCEAIQVPTTSRHSHLGVQYTNYEPEGWKCKCGPSF 117

[Close]
BLAST of Lsi07G005940 vs. ExPASy TrEMBL
Match: A0A6J1IUG9 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111480029 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.7e-42
Identity = 91/124 (73.39%), Postives = 95/124 (76.61%), Query Frame = 0 

Query: 1   MKAAY---WCFILILQLTCWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAVKG--VNE 60
           MK  Y    CFIL LQL CWVSAA  TF    ALLPHKQQG    + DS +AV+   V E
Sbjct: 1   MKGTYCCCCCFILTLQLACWVSAATTTF----ALLPHKQQGF---NFDSVKAVEEGVVKE 60

Query: 61  EAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCGPS 120
              YRGMRKIGSSPPSCEHKCYGC PCEAIQVPT NRRSHVG+QYTNYEPEGWKCKCGPS
Sbjct: 61  GEVYRGMRKIGSSPPSCEHKCYGCSPCEAIQVPTNNRRSHVGIQYTNYEPEGWKCKCGPS 117

[Close]
BLAST of Lsi07G005940 vs. ExPASy TrEMBL
Match: A0A6J1GTM4 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111457464 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 90/124 (72.58%), Postives = 94/124 (75.81%), Query Frame = 0 

Query: 1   MKAAY---WCFILILQLTCWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAVKG--VNE 60
           MK  Y    CFIL LQL CWVSAA  TF    ALLPHKQQG    + DS +AV+   V  
Sbjct: 1   MKGTYRCCCCFILTLQLACWVSAATTTF----ALLPHKQQGF---NFDSVKAVEEGVVKG 60

Query: 61  EAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCGPS 120
              YRGMRKIGSSPPSCEHKCYGC PCEAIQVPT NRRSHVG+QYTNYEPEGWKCKCGPS
Sbjct: 61  GEVYRGMRKIGSSPPSCEHKCYGCTPCEAIQVPTNNRRSHVGIQYTNYEPEGWKCKCGPS 117

[Close]
BLAST of Lsi07G005940 vs. NCBI nr
Match: XP_038904354.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 245.0 bits (624), Expect = 3.3e-61
Identity = 113/120 (94.17%), Postives = 113/120 (94.17%), Query Frame = 0 

Query: 1   MKAAYWCFILILQLTCWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAVKGVNEEAFYR 60
           MK  YWCFILILQL CWVSAAARTFAPNHALLPHKQQGLISGSLDSKEA KGVNEEAFYR
Sbjct: 1   MKRTYWCFILILQLACWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAGKGVNEEAFYR 60

Query: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVPT-INRRSHVGVQYTNYEPEGWKCKCGPSFYSP 120
           GMRKIGSSPPSCEHKCYGCIPCEAIQVPT  NR SHVGVQYTNYEPEGWKCKCGPSFYSP
Sbjct: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVPTATNRHSHVGVQYTNYEPEGWKCKCGPSFYSP 120

[Close]
BLAST of Lsi07G005940 vs. NCBI nr
Match: XP_004146810.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652341.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652342.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >KAE8651286.1 hypothetical protein Csa_001818 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 3.0e-54
Identity = 104/120 (86.67%), Postives = 105/120 (87.50%), Query Frame = 0 

Query: 1   MKAAYWCFILILQLTCWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAVKGVNEEAFYR 60
           MK  YWCFI ILQL CWVSAAAR FAPN AL PHKQQGLI    DSK+AVKGV EE FYR
Sbjct: 1   MKGTYWCFIFILQLVCWVSAAARNFAPNPALPPHKQQGLI----DSKQAVKGVKEEEFYR 60

Query: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVP-TINRRSHVGVQYTNYEPEGWKCKCGPSFYSP 120
           GMRKIGSSPPSCEHKCYGCIPCEAIQVP T NRRSHVGVQYTNYEPEGWKCKCGPSFYSP
Sbjct: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHVGVQYTNYEPEGWKCKCGPSFYSP 116

[Close]
BLAST of Lsi07G005940 vs. NCBI nr
Match: XP_008447616.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447617.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_008447618.1 PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >KAA0036717.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa] >TYK03693.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 2.6e-53
Identity = 100/120 (83.33%), Postives = 105/120 (87.50%), Query Frame = 0 

Query: 1   MKAAYWCFILILQLTCWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAVKGVNEEAFYR 60
           MK  YWCFI ILQL CWVSAAARTFAPN ALLPHKQ     G ++SK+AVKG+ EE FYR
Sbjct: 1   MKGTYWCFIFILQLVCWVSAAARTFAPNPALLPHKQ-----GLIESKQAVKGIKEEEFYR 60

Query: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVP-TINRRSHVGVQYTNYEPEGWKCKCGPSFYSP 120
           GMRKIGSSPPSCEHKCYGCIPCEAIQVP T NRRSH+GVQYTNYEPEGWKCKCGPSFYSP
Sbjct: 61  GMRKIGSSPPSCEHKCYGCIPCEAIQVPTTTNRRSHIGVQYTNYEPEGWKCKCGPSFYSP 115

[Close]
BLAST of Lsi07G005940 vs. NCBI nr
Match: XP_022152671.1 (EPIDERMAL PATTERNING FACTOR-like protein 3 [Momordica charantia] >XP_022152672.1 EPIDERMAL PATTERNING FACTOR-like protein 3 [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0 

Query: 1   MKAAYWCFILILQL--TCWVSAAARTFAPNHA--LLPHKQQGLISGSLDSKEAVKGVNEE 60
           MK  + CFIL LQ+  +CWVSAA R FAPNHA  LLPHK QGLISGS DSKE  + VN  
Sbjct: 1   MKGTFCCFILTLQIACSCWVSAATRPFAPNHALPLLPHK-QGLISGSFDSKEGFEAVN-- 60

Query: 61  AFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCGPSF 120
              RGMR+IGSSPPSC+HKCYGC PCEAIQVPT +R SH+GVQYTNYEPEGWKCKCGPSF
Sbjct: 61  ---RGMREIGSSPPSCQHKCYGCSPCEAIQVPTTSRHSHLGVQYTNYEPEGWKCKCGPSF 117

[Close]
BLAST of Lsi07G005940 vs. NCBI nr
Match: XP_023526549.1 (EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.4 bits (459), Expect = 4.5e-42
Identity = 91/124 (73.39%), Postives = 96/124 (77.42%), Query Frame = 0 

Query: 1   MKAAY---WCFILILQLTCWVSAAARTFAPNHALLPHKQQGLISGSLDSKEAVKG--VNE 60
           MK  Y    CFIL LQL CWVSAA  TF    ALLPHKQQG    ++DS +AV+   V E
Sbjct: 1   MKGTYCCCCCFILTLQLACWVSAATTTF----ALLPHKQQGF---NVDSVKAVEEGVVKE 60

Query: 61  EAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCGPS 120
              YRGMRKIGSSPPSCEHKCYGC PCEAIQVPT NRRSHVG+QYTNYEPEGWKCKCGPS
Sbjct: 61  GEVYRGMRKIGSSPPSCEHKCYGCTPCEAIQVPTNNRRSHVGIQYTNYEPEGWKCKCGPS 117

[Close]
BLAST of Lsi07G005940 vs. TAIR 10
Match: AT3G13898.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). )

HSP 1 Score: 91.7 bits (226), Expect = 4.4e-19
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 54  NEEAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCG 113
           N+E   +  R+IGS PPSCE KCYGC PCEAIQ PTI+   H+   Y NY+PEGW+C C 
Sbjct: 46  NKEEIVKRRRRIGSKPPSCEKKCYGCEPCEAIQFPTISSIPHLSPHYANYQPEGWRCHCP 105

Query: 114 P 115
           P
Sbjct: 106 P 106

[Close]
BLAST of Lsi07G005940 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-12
Identity = 32/76 (42.11%), Postives = 41/76 (53.95%), Query Frame = 0 

Query: 64  KIGSSPPSCEHKCYGCIPCEAIQVPTINRRSH--------------------VGVQYTNY 120
           ++GS+PPSC ++C  C PC AIQVPT+  RS                     V  QY+NY
Sbjct: 47  RLGSTPPSCHNRCNNCHPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTVLDQYSNY 106

[Close]
BLAST of Lsi07G005940 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 28/66 (42.42%), Postives = 33/66 (50.00%), Query Frame = 0 

Query: 55  EEAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYT-NYEPEGWKCKCG 114
           E    R +R +GSSPP C  KC  C PC+ + VP        G   T  Y PE W+CKCG
Sbjct: 170 EAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPV-----PPGTPVTAEYYPEAWRCKCG 229

Query: 115 PSFYSP 120
              Y P
Sbjct: 230 NKLYMP 230

[Close]
BLAST of Lsi07G005940 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 28/66 (42.42%), Postives = 33/66 (50.00%), Query Frame = 0 

Query: 55  EEAFYRGMRKIGSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYT-NYEPEGWKCKCG 114
           E    R +R +GSSPP C  KC  C PC+ + VP        G   T  Y PE W+CKCG
Sbjct: 96  EAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPV-----PPGTPVTAEYYPEAWRCKCG 155

Query: 115 PSFYSP 120
              Y P
Sbjct: 156 NKLYMP 156

[Close]
BLAST of Lsi07G005940 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-07
Identity = 23/54 (42.59%), Postives = 28/54 (51.85%), Query Frame = 0 

Query: 66  GSSPPSCEHKCYGCIPCEAIQVPTINRRSHVGVQYTNYEPEGWKCKCGPSFYSP 120
           GSSPP+C  KC  C PC+ + VP     S        Y PE W+CKCG   + P
Sbjct: 60  GSSPPTCRSKCGKCQPCKPVHVPIQPGLS----MPLEYYPEAWRCKCGNKLFMP 109

The following BLAST results are available for this feature:
BLAST of Lsi07G005940 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
C4B8C46.2e-1859.02EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9LFT53.3e-1142.11EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q1PEY63.4e-0842.42EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q2V3I32.4e-0642.59EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q9LUH91.2e-0540.74EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
BLAST of Lsi07G005940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BIS61.2e-5383.33Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103490030... [more]
A0A5D3BVF61.2e-5383.33Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6J1DIF66.2e-4574.80Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11... [more]
A0A6J1IUG93.7e-4273.39Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1GTM41.9e-4172.58Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
BLAST of Lsi07G005940 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038904354.13.3e-6194.17EPIDERMAL PATTERNING FACTOR-like protein 3 isoform X1 [Benincasa hispida][more]
XP_004146810.13.0e-5486.67EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis sativus] >XP_011652341.1 EPI... [more]
XP_008447616.12.6e-5383.33PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Cucumis melo] >XP_0084476... [more]
XP_022152671.11.3e-4474.80EPIDERMAL PATTERNING FACTOR-like protein 3 [Momordica charantia] >XP_022152672.1... [more]
XP_023526549.14.5e-4273.39EPIDERMAL PATTERNING FACTOR-like protein 2 [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi07G005940 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G13898.14.4e-1959.02unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot... [more]
AT5G10310.12.3e-1242.11unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G30370.12.4e-0942.42allergen-related [more]
AT2G30370.22.4e-0942.42allergen-related [more]
AT4G14723.11.7e-0742.59BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 64..119
e-value: 3.9E-21
score: 74.8
NoneNo IPR availablePANTHERPTHR33109:SF14EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 3coord: 1..119
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G005940.1Lsi07G005940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0005576 extracellular region