Lsi07G005760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G005760
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionBeta-galactosidase
Locationchr07: 6103274 .. 6108128 (-)
RNA-Seq ExpressionLsi07G005760
SyntenyLsi07G005760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTATATAATAAGCTTACCAACAATGTTGGGTGACCCTTGAGGGTAGGAAATTTTCATAGAGGTGCCCTTTTTTTTTTTTGTCATTGCATTGTCAAAGTATCTGTTGCATATATGAAAATTTTCATATCATCACTTTCTTAACCAATATTAAATGAAACAAATTATTGTTTCATGTCTTTGTTTTTCACATTAATACCATATTTTCATTCTAAAGTTAAAAATTTATTATTTTGACGATATATTGATGAAAATTGAAAACTTGAAATGAAATAGATTAATTAAGGCACTGTTTGATGTAACTATTTCTCTTTACATATGTATCTTGTTTTATAATAATAATAATAATAAGAAGAAGAAGAAGAAGAAGGAGGTACTGTGAAAAAAGTTTTCATAAACTTGTTTTTGTTTCTTTAAGATTGATGAAAATCATAATAGAAAAAAATGGAGAAAATTAACGAGCATAAATTTCAAAAAATAGAAAACTAAAATTGAAACTTTATCAAATGAGCTTAAAATATTATTTTAGTCCGTATAGTTTTTTATATCATTCTATTTTAGTTATCTACTTTCAAATTATTTGATAACTTGAAGCTCCTTCATAAATTAATTGGCAATAAAAGGAGTAATTCATGTATTTTATAAAACATTGTGAAATCTCTTAATTTTTATATTTTTAGAGCTCGTTGGATTGAATAAGTGTTTATAAGTGCAAATAAATTATTTATAAACGCTTAGAAGGTTCATCCAAACCAACCTTTAGTTATGCAATTTCAAATGTTCACATATAGTTTTTGTGTAGTTTTAATAAATCTTAAAACTAGTCATTTGAAATTAATTTTTATCAAACATTGGATAAATAGTATAAAAAATTTTCATTCAAGAAAACTAATGGGAAATATGTCTCCAAAATTTGTAGAAAGAAAACTAATAAATACTAAATTTTATTTTAATAAGATACGAATTAACTAATTGTAGAGAGTAAACTTTTAACATTTATTAAAATTACATATACTAAATTTGAATATTTGAAAAATTTTTGATAAAAAAAATAGAAAAAAATTGAAAAGAGGGAAATTCAAATCTTGTTATCATAACTTTAGGAATCAGTCTTTCTATTTATCAATAAAGGTAAATAAGTAAAACCTACTTGGACAAATAGTAAAATAAAGCAAAAATTTTGCAAACCTAGCCAAATTTAAAATAATTTACAAATATAACAAACTAATATTTGAAAATTAAATTACCAAATTGTTCACACCTAGATGCAATATGCTATTAGTGATAGACTCCTATCAAAGGTAGAATTGCGATAGACTCTTATTACTGGGTATACTTTTACATGTGGGATAACAAACTATAACTAATCGACTTCTATTAGTCATAAACTTCAATCATGCATAATTTTAATTTTTACATTAAATGTTAATTATCTTTTATATGTGTTTACTCTTTAGGGAACAACAAGAAATGAGCAACTTTTTAAATAGATAAAAAAATTGTTTGGGAAACTTAAAATATGATATCTTAACATTAATGACTTTTCCATATTTTATGTGTAGGAATCTTATCAGGTCTATCAGTAATAGATTTTTATTAGTGGTAGACTAATATTATTAATATAATCCTATGATCAATAAAAATGATATATTTATATCTCTAGTAAGAATAATATTGGAAATAATTAAAAATAAAAAACCACTTTATCATTTTTTATATGTTTAAGTTATTTGCTACATTTTGCAAATAATCTGTTTGATTTTTTTTCCTTAGCTTTCTATACATATAGCCTAAAGAAATATGCCGTTTTATTACATAATTGTCTAAACTTTCCTACTTTTTTACATGAATAGCTAATGAGCTATTATTTTAACAAAAGTCTAGCCTATTTTGCTGTTTTAGCCCTTCTTACCATTCACTTTTTTTAATATACATACATATGTATATACACACACACCAAAAGAGAAAGTTTCTTGCAAACTTCCCAAAACAATTTTTTTTCAAAACGTGCAAGGAAAAGTTTCTCCAAGCATTCGAAAATTGTTGCCCTCATGAATAAAAGCAAGAATTGGCAAGAAGTTTCAAAGGAGATAACAAGCTATACATGATATATACAACACTGTATATTTGAATGTTCTGAAAATAAATCAAGGTATATTTGATAATTGAATGAACAAGACAATTTGTACAATTAATCATTTTATGTACCGAACAATATATGCACGTATATTTACATTCTCTAGTATATTTTGTAAACATACCATAAAATAAACGGTGGTATATGCAATATATATTTACATTTTTTTATATATTACTAGTATTTTCAACATATACTCGAATCTCAATGGAGAGGTGACTGATGTTTAGCTAGGAAAATAGAAGAAAATAAAAAAAAAATATCCTAAAGTGAAGAAAACATTAATTTGAAATATCCAACATTAAATAAATATCAACCGAAATTAATAAATAACAAAAATAAATTTAAAATTTGAAAATGATGTTAATAAGAAAAAGGTTAAATATTTCGAAAAAATTATTGATGAGAGATAATGTAATTACTTATATTTTAAAAAAATAAAATCTTTATATAATTTATAGTAAATTCGGAAATTATATATATTTTTATTTTAAAATATTACGAAATCAAAAGATGAAAGAGAATATCAAAAGGTTAAAAATGTCCTAAAATGATGCTAAAATCTTGTTAGGAAATATTACTAAATTTTAAGATTTTTGTGAAATATTATTAATATAATAAGCTAATTCCCTAATTTTTTTTCCCATTTCCTACAATTCCTCTTAAGGAAAGGGCAAGTAAGAGAAAATCCTCCACGTTGACCCAATTTGTGAGGCCCAAGAATTAGATGTCCTTAGGCTTTAGATGGGTCAGCCTACATGTTTAGGCCCACTTTCTAAACTATGGATAATGATTATTTTGGTTTATTTTATTTGTTAATTATTATTTTTCTCAATTATCCATTCCAACTACCCATTTAAATACATAATGATTAATATAAAATAAAGGGCGGTTTTTAAATAGAGATAAATAAGTCAAATTATTTATAAATATAGAAAAATTTTACTGTCTATTAGCGATAGACCGTAATAGAATTCTATCACTTGAGCAATGAAAGTCTATTGCGATCTATTGCTGATAGACAGTAAAATTTTTCTATATTTATAAATAATTTAATATTTTTTTATTTATAGTAATTTTCAAAATAAATTGTTTTCTTTTAAATTATAAATTAAATTATAATTTTGGTCAATAAACTTTTAGATTGATGTCTAATTAGTTACTCAGTGTATTATTAATTTCAAGGTATAAGGTTCGATTTCCCACCTCATATATTTAATCTAATACCTTTGGAAAAAGAAAAAGTTACTCTATTAGAAAATTATTAGTCACATATTATTGTTATATATATATATAGTCATACAAATTAAAATTTCAAAATTAATTATCCTTAATTTAGAATTTAATATTTATCTAATATAATTACAAGTAACATTTATCCAATACAATTAAAAGTTTTATAAGTTTTTAAATTATTTTTTAATAATAGAAAGAGTTTTTTTAGGGAAAGTTTTAAAAACAGAAAAATAAGGTAAACTATTTACACAAAATAGCAAAATTTTTAAATAGTTGTGATAGACGTCGATAGAAGTCTATCAGGATCTATCAACAATAGAAATTATAGAAGTCTATCACTAATAGATGCTGATAGAAGTCTATCAATGTCTATCAGTATTTTTTTTTTTTTTTACTATTTTATGTAAATAATTTGACATTTTTTTAATTTGTAATTTTTTTTAAGGGATAAATAATATAAAGAGTTGATAGTTTAGAGATTTATTATTATTATTATTATTATTATTTTGAAAGAAAAATAATCAAAGAGAATAATTACACTAACAAATGCGTATGATGAGGAATGTGAGGAAGAAAGAACAAAGAAAATTACAAGAGCATATGTTCGAAATTCGAACCAAAAGGGAAAGAAGGAAAGTTATAACTTCGTTGAATTGAATGAATTACAGTTCGAAGCTTTCATCCATGGCAAAGAGACGACACCTGAGACCTTCTCTCTTCTTCCTCCTCCTCGTCTTCCTTACAGTTTTTGGAGTGATCGTTCCAGTGTTTGCTCTTCTTCCTTCACTGCATTCTCACCCCCAGGGTCTCTTCCGTCATCACCATGATCATACCAAGGTCAAGAAGGTAGCTCAACTCTCCTTTTGCATCTCATTAATGTCTTCCTTATTACTTAATTGCTGTCTCGATGATACCTGATTTTTGTTTCATAGCAATTCCTGATCAGTCGAGTGCTTGAATGTTTCATTTTGAAGTTAAACTGGCTCTGATTCTTTCTGCGATATAGTATTTAATGCTCCCTATTGGCTTTAATATTTGAGCTGTAATTCATTTCATCTAAGTAAGTAGCAGCTATTAATCGTTTTCGCATTTTTTAAGTTCTTGGATTTGGGAATGCATTTTTTGCGAATCCAAAATTAGCTTAATACTGAACTTGAATCGGGTTCACATAGCATATATCATGTTCTATTGCGATTACGAGGAAGTCAAGAAAATATTTATGTTTTAGTTGGTAGGTTTACATTTCCAGGTGTTTTGGATTTAGATAATTTACAGGTGTTTTGAGTCATTGAAGTCTGTAGAAGTGTTCATAAACGTTTTGAAATTCTTTCCTCGAATTAGGATCGTGAGTCTGTAACTTGACACTTTCAGCAAGCAATCTGAAATAAGCTGGGCTGTGAAATTTATGGGTCATTTTGCATTATAACTGTAATCAATTAGGGAGGAGGCCACATTATATGAGGACGACGTTTCCTCTTGA

mRNA sequence

ATGATTTCGAAGCTTTCATCCATGGCAAAGAGACGACACCTGAGACCTTCTCTCTTCTTCCTCCTCCTCGTCTTCCTTACAGTTTTTGGAGTGATCGTTCCAGTGTTTGCTCTTCTTCCTTCACTGCATTCTCACCCCCAGGGTCTCTTCCGTCATCACCATGATCATACCAAGGTCAAGAAGGTTTACATTTCCAGGGAGGAGGCCACATTATATGAGGACGACGTTTCCTCTTGA

Coding sequence (CDS)

ATGATTTCGAAGCTTTCATCCATGGCAAAGAGACGACACCTGAGACCTTCTCTCTTCTTCCTCCTCCTCGTCTTCCTTACAGTTTTTGGAGTGATCGTTCCAGTGTTTGCTCTTCTTCCTTCACTGCATTCTCACCCCCAGGGTCTCTTCCGTCATCACCATGATCATACCAAGGTCAAGAAGGTTTACATTTCCAGGGAGGAGGCCACATTATATGAGGACGACGTTTCCTCTTGA

Protein sequence

MISKLSSMAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKVYISREEATLYEDDVSS
Homology
[Close]
BLAST of Lsi07G005760 vs. ExPASy TrEMBL
Match: A0A1S3CKJ1 (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502003 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 3  SKLSSMAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKV 62
          SKLSSMAKRRHL PS FFLLL+FLTV GVIVPVFALLPSLHSH QGLFRHHHD +   KV
Sbjct: 5  SKLSSMAKRRHLIPSFFFLLLIFLTVLGVIVPVFALLPSLHSHSQGLFRHHHDRSNFNKV 64

Query: 63 YISREE 69
          +  + E
Sbjct: 65 HTRKFE 70

[Close]
BLAST of Lsi07G005760 vs. ExPASy TrEMBL
Match: A0A1S4E4G8 (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502003 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 3  SKLSSMAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKV 62
          SKLSSMAKRRHL PS FFLLL+FLTV GVIVPVFALLPSLHSH QGLFRHHHD +   KV
Sbjct: 5  SKLSSMAKRRHLIPSFFFLLLIFLTVLGVIVPVFALLPSLHSHSQGLFRHHHDRSNFNKV 64

Query: 63 YISREE 69
          +  + E
Sbjct: 65 HTRKFE 70

[Close]
BLAST of Lsi07G005760 vs. ExPASy TrEMBL
Match: A0A0A0LGB2 (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G848260 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.8e-16
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 3  SKLSSMAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKV 62
          SKLSSMAKRRHL PSLFFLLL+FLTV GVIVPVFALLPSLHSH   LFRHHH  +   KV
Sbjct: 5  SKLSSMAKRRHLMPSLFFLLLIFLTVLGVIVPVFALLPSLHSHSHPLFRHHHHRSNFNKV 64

Query: 63 YISREE 69
          +  + E
Sbjct: 65 HTRKFE 70

[Close]
BLAST of Lsi07G005760 vs. ExPASy TrEMBL
Match: A0A5D3E3M2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10771G00010 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.8e-16
Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 8  MAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKVYISRE 67
          MAKRRHL PS FFLLL+FLTV GVIVPVFALLPSLHSH QGLFRHHHD +   KV+  + 
Sbjct: 1  MAKRRHLIPSFFFLLLIFLTVLGVIVPVFALLPSLHSHSQGLFRHHHDRSNFNKVHTRKF 60

Query: 68 E 69
          E
Sbjct: 61 E 61

[Close]
BLAST of Lsi07G005760 vs. ExPASy TrEMBL
Match: A0A6J1G1M6 (Beta-galactosidase OS=Cucurbita moschata OX=3662 GN=LOC111449840 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.4e-15
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 3  SKLSSMAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKV 62
          SKLS+MAKRRH+R SL FLLL+ LT FGVIVPVFALLPSL+SH   LFRHH DH+K+KKV
Sbjct: 5  SKLSAMAKRRHVRASLIFLLLILLTAFGVIVPVFALLPSLNSHSHRLFRHHLDHSKLKKV 64

Query: 63 YISREE 69
             + E
Sbjct: 65 QTRKFE 70

[Close]
BLAST of Lsi07G005760 vs. NCBI nr
Match: XP_038875608.1 (beta-galactosidase 17 [Benincasa hispida])

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-19
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 3  SKLSSMAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKV 62
          SKLSSMAKRRHLRPSLFFLLL+FLTVFGVIVPVFALLPSL+SH  GLFRHHH H+  KKV
Sbjct: 5  SKLSSMAKRRHLRPSLFFLLLIFLTVFGVIVPVFALLPSLNSHSHGLFRHHHHHSNFKKV 64

Query: 63 YISREE 69
          +  + E
Sbjct: 65 HTRKFE 70

[Close]
BLAST of Lsi07G005760 vs. NCBI nr
Match: XP_008464017.1 (PREDICTED: beta-galactosidase 17 isoform X2 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 8.7e-18
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 3  SKLSSMAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKV 62
          SKLSSMAKRRHL PS FFLLL+FLTV GVIVPVFALLPSLHSH QGLFRHHHD +   KV
Sbjct: 5  SKLSSMAKRRHLIPSFFFLLLIFLTVLGVIVPVFALLPSLHSHSQGLFRHHHDRSNFNKV 64

Query: 63 YISREE 69
          +  + E
Sbjct: 65 HTRKFE 70

[Close]
BLAST of Lsi07G005760 vs. NCBI nr
Match: XP_016903128.1 (PREDICTED: beta-galactosidase 17 isoform X1 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 8.7e-18
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 3  SKLSSMAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKV 62
          SKLSSMAKRRHL PS FFLLL+FLTV GVIVPVFALLPSLHSH QGLFRHHHD +   KV
Sbjct: 5  SKLSSMAKRRHLIPSFFFLLLIFLTVLGVIVPVFALLPSLHSHSQGLFRHHHDRSNFNKV 64

Query: 63 YISREE 69
          +  + E
Sbjct: 65 HTRKFE 70

[Close]
BLAST of Lsi07G005760 vs. NCBI nr
Match: XP_011652351.1 (beta-galactosidase 17 [Cucumis sativus] >KGN59817.1 hypothetical protein Csa_001250 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-16
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 3  SKLSSMAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKV 62
          SKLSSMAKRRHL PSLFFLLL+FLTV GVIVPVFALLPSLHSH   LFRHHH  +   KV
Sbjct: 5  SKLSSMAKRRHLMPSLFFLLLIFLTVLGVIVPVFALLPSLHSHSHPLFRHHHHRSNFNKV 64

Query: 63 YISREE 69
          +  + E
Sbjct: 65 HTRKFE 70

[Close]
BLAST of Lsi07G005760 vs. NCBI nr
Match: KAA0036665.1 (beta-galactosidase 17 isoform X2 [Cucumis melo var. makuwa] >TYK29905.1 beta-galactosidase 17 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 8  MAKRRHLRPSLFFLLLVFLTVFGVIVPVFALLPSLHSHPQGLFRHHHDHTKVKKVYISRE 67
          MAKRRHL PS FFLLL+FLTV GVIVPVFALLPSLHSH QGLFRHHHD +   KV+  + 
Sbjct: 1  MAKRRHLIPSFFFLLLIFLTVLGVIVPVFALLPSLHSHSQGLFRHHHDRSNFNKVHTRKF 60

Query: 68 E 69
          E
Sbjct: 61 E 61

The following BLAST results are available for this feature:
BLAST of Lsi07G005760 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi07G005760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CKJ14.2e-1877.27Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502003 PE=3 SV=1[more]
A0A1S4E4G84.2e-1877.27Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103502003 PE=3 SV=1[more]
A0A0A0LGB21.8e-1674.24Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_3G848260 PE=3 SV=1[more]
A0A5D3E3M28.8e-1675.41Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10771... [more]
A0A6J1G1M64.4e-1571.21Beta-galactosidase OS=Cucurbita moschata OX=3662 GN=LOC111449840 PE=3 SV=1[more]
BLAST of Lsi07G005760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038875608.13.5e-1980.30beta-galactosidase 17 [Benincasa hispida][more]
XP_008464017.18.7e-1877.27PREDICTED: beta-galactosidase 17 isoform X2 [Cucumis melo][more]
XP_016903128.18.7e-1877.27PREDICTED: beta-galactosidase 17 isoform X1 [Cucumis melo][more]
XP_011652351.13.7e-1674.24beta-galactosidase 17 [Cucumis sativus] >KGN59817.1 hypothetical protein Csa_001... [more]
KAA0036665.11.8e-1575.41beta-galactosidase 17 isoform X2 [Cucumis melo var. makuwa] >TYK29905.1 beta-gal... [more]
BLAST of Lsi07G005760 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G005760.1Lsi07G005760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0048046 apoplast
cellular_component GO:0005773 vacuole
molecular_function GO:0004565 beta-galactosidase activity