Lsi07G005390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G005390
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPhotosystem II protein D1
Locationchr07: 5708367 .. 5711027 (+)
RNA-Seq ExpressionLsi07G005390
SyntenyLsi07G005390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCCTTAAATAATGTGGTGGTGATAGTTATGGAGCATGCCCTCTGTTATAGCTGTCTAATACACCATTATTATTATTGTTTCGTCTGCGGATCACGTCAAGAGCTGGCTCTGGGTTTTGCGTTTACGGCACAACGACACTCCACCAACAATCGTAAAGGTTCTATTCTATCCTCTTCACCCTTCTTCTATCCCCTCATATTTGTTCTTTTCTTTTCTTTTTTAATATAAATCGAGAATGATTAGGTGCAGCATAGTGAAAATTTTCAATCGAAAACTCGAATTTTGATAGTTTCGAAAATTTCCCTTAGTTTCTCAAATTTTCCATGAAAATTTCGAGAAAACTTTGTTTTTTTAAGCAATTAGCTACTAACTCAATAGAAGTTTTTTTTTAGCTTTATGGTCTTATCTTGATTACACAAATGGTGTAGTTTCACTATAGATGTGAGTTTTGTTTCTTTTAGCATCCAAATTTTTTTTTCTTTCAATAAATCACATATTTATTTTTAACTTCATTAAAAAAAAAATTGTATTTCATCACAAAATTGTATTTCTTTTACCATTCAAAGCTTTCATTTTCAAGAAATCAAATTTGAGAAAAATAATATATATTTATTTGATATTATTTTGTAATTATTTTTTATTTCTTTTTTAAATTTTTGCTCTCGCATCGACATTTACACATATATTTATAATATACATCCAAATTTTGTCTTACTTTATAGAAGTAATGATTAACAATGGTCAATTATAGTTTAATTAAACTATAATAAAAACTTCATTAACTAATTATAATAATTTCCATAATTTCCATAAAGTTTTTCAAAACTTCCATCAATGTCGATATTTTTATCTATATTTCCATAAAATCGGGACCTCAATATTTCAAACTTTGGGTGCAATTCATGCTTCTCTTTCTTCTACAAGTAAAGAAAAATTAAAAACAATTCATTTTTTTAAAAAAAAAACTTGCCACAACAAATTTTTACTGAACAATTGTTTGTGTTGCACAAAGATTGGTGCAACTCAAGCAGCATCCAATTTTTCTCAAATTAATTAAACTTATAAACACTACTCCCACCTATAGTTTTTAACTTTTTTCTTTTTATTGAAATTTAGCTAAGAATTTTAATGTTTAGTTAGTAAAGATGAAAGCCTAAAGTTCTGAAACCATATTAATTTGAGTATATTATTGAATCAAAGGCTGTAATTTACATTTCAAATACATCTTTGATCAATTGAATCTAAAAGGAAAGTTTGCATAATTTAAGACCTAATTGAATCTAATTACATTAGTTATATTAACTATATTGATGTTTTCAAAAACCAAGTCAAGTTTTGAAAACTAAAAAAAAGTAGTTTTTAAAAACTTATTTATGTATTTAGATTTTGATTAATAATTCAAATATTTTTTTATAAAAAAAAGTGAAAAACATGGTAAGAAAACCGGTAGGAAACGATATATTAATTTTGAAATAGAAAATTAAAAACAAAATAACTATCAAACGAAACCTTAATTAGATGTTAGGTCCCATTTTGGTGACGATTTCATTTTTAATCTTCTCTTTTAGAAATGTATATTTATTTTCTCTAAAATTTTCAATTATACTTTTCACTTTTTTTTTTTGTTAAGCAAGACTTGAATTTTTAATCAAATTTTAAAAGTAAAAACAAGTTCTCGAGACCTGTATTTTGTAGTTTTCGAATTTTGGATTCTTCTTCCAAATGCAGGATAACCCCGAGGGGTTGCGAGTTTTTTCTACCAATTGGGGCCCTCCCTTCACCACCCCCATGGGGATGGTCTACAGGGTTCATAACTACTTCTCTTACTACAGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTTTTCTGGGTTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGAACCTCCCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTTACTACAGCACCTGCTGCTCTAGCTAATTGTCCCCTCTTCTCAAGTGTGATTTCTATGTTATGTATGGTCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTTCTTTTTGATCAATCAAAACACCTCTCCAAACGGTACAAGCTTCTTCCAAAGCATATGGCTTTCTAGATGTAGATGTTGATATCTATACATATGGATCTTATATATATATATATATCTCGTACAATGAAGTTTTTGAAAATATGAGTAGATGTGTGAATTAAAAAAAAATAATAAATGAAAATAGTGTTTATAACCTAATATTGATAAACAAAAAACTAAAAACGAAAAGAACATAAAAACGGACCTTGCTTTATTAATTTTCTTATTTACCCTTTTTGTAGTGAGTATTTCAAAAAGGAAATGGGAATACATTGTTATTGCGAGTATGGCTCTCACTCTTCCCATTGACGACGAGGACCATGTTTCTGTTGATATTATCGAGAATGCTTTGGCAATCAGTAATACGCCGATAATTGGCGACGACGATTCTCAAGTTTCCACTCATATTGGGAATGCTTTGGCTATCAATAATCTTCCTACCGACGGCCATCTGGTTTCTGTTGATATTATTCGATGA

mRNA sequence

ATGAGATCCTTAAATAATGTGGTGGTGATAGTTATGGAGCATGCCCTCTGTTATAGCTGTCTAATACACCATTATTATTATTGTTTCGTCTGCGGATCACGTCAAGAGCTGGCTCTGGGTTTTGCGTTTACGGCACAACGACACTCCACCAACAATCGTAAAGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTTTTCTGGGTTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGAACCTCCCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTTACTACAGCACCTGCTGCTCTAGCTAATTGTCCCCTCTTCTCAAGTGTGATTTCTATGTTATTGAGTATTTCAAAAAGGAAATGGGAATACATTGTTATTGCGAGTATGGCTCTCACTCTTCCCATTGACGACGAGGACCATGTTTCTGTTGATATTATCGAGAATGCTTTGGCAATCAGTAATACGCCGATAATTGGCGACGACGATTCTCAAGTTTCCACTCATATTGGGAATGCTTTGGCTATCAATAATCTTCCTACCGACGGCCATCTGGTTTCTGTTGATATTATTCGATGA

Coding sequence (CDS)

ATGAGATCCTTAAATAATGTGGTGGTGATAGTTATGGAGCATGCCCTCTGTTATAGCTGTCTAATACACCATTATTATTATTGTTTCGTCTGCGGATCACGTCAAGAGCTGGCTCTGGGTTTTGCGTTTACGGCACAACGACACTCCACCAACAATCGTAAAGGACGCTTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTACCTAGCCAACATTTAGATCCGGCTCTACCCAAACTTTTCTGGGTTACCCCAGCATTCCCCACTTGTCCGACTGTTGCTGAGCAATTTTTGGATATCAAACGAACCTCCCCAGAAGGTAATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTTACTACAGCACCTGCTGCTCTAGCTAATTGTCCCCTCTTCTCAAGTGTGATTTCTATGTTATTGAGTATTTCAAAAAGGAAATGGGAATACATTGTTATTGCGAGTATGGCTCTCACTCTTCCCATTGACGACGAGGACCATGTTTCTGTTGATATTATCGAGAATGCTTTGGCAATCAGTAATACGCCGATAATTGGCGACGACGATTCTCAAGTTTCCACTCATATTGGGAATGCTTTGGCTATCAATAATCTTCCTACCGACGGCCATCTGGTTTCTGTTGATATTATTCGATGA

Protein sequence

MRSLNNVVVIVMEHALCYSCLIHHYYYCFVCGSRQELALGFAFTAQRHSTNNRKGRLPSQHLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPAALANCPLFSSVISMLLSISKRKWEYIVIASMALTLPIDDEDHVSVDIIENALAISNTPIIGDDDSQVSTHIGNALAINNLPTDGHLVSVDIIR
Homology
[Close]
BLAST of Lsi07G005390 vs. ExPASy Swiss-Prot
Match: Q6ENC9 (Uncharacterized protein ycf72 OS=Oryza nivara OX=4536 GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]
BLAST of Lsi07G005390 vs. ExPASy Swiss-Prot
Match: P0C308 (Uncharacterized protein ycf72 OS=Oryza sativa OX=4530 GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]
BLAST of Lsi07G005390 vs. ExPASy Swiss-Prot
Match: P0C309 (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica OX=39946 GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]
BLAST of Lsi07G005390 vs. ExPASy Swiss-Prot
Match: Q36996 (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica OX=39947 GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.6e-27
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VAD PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]
BLAST of Lsi07G005390 vs. ExPASy Swiss-Prot
Match: Q37082 (Uncharacterized protein ycf72 OS=Zea mays OX=4577 GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-26
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVA+QF D KRTSP+GN  VA+ PSFAISF TAPA
Sbjct: 25  RLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPA 84

Query: 128 ALANCPLFSSVISML 143
           ALANCP    VISML
Sbjct: 85  ALANCPPLPRVISML 99

[Close]
BLAST of Lsi07G005390 vs. ExPASy TrEMBL
Match: A0A6A5MQL3 (Uncharacterized protein ycf72 OS=Lupinus albus OX=3870 GN=Lal_00043616 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.2e-31
Identity = 71/82 (86.59%), Postives = 72/82 (87.80%), Query Frame = 0 

Query: 61  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 120
           H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI
Sbjct: 59  HGDGLQGRLPSQHLDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 118

Query: 121 SFTTAPAALANCPLFSSVISML 143
           SF TAPAALANCP F SVISML
Sbjct: 119 SFATAPAALANCPPFPSVISML 140

[Close]
BLAST of Lsi07G005390 vs. ExPASy TrEMBL
Match: A0A6A5N0B0 (Uncharacterized protein ycf72 OS=Lupinus albus OX=3870 GN=Lal_00035372 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.2e-31
Identity = 71/82 (86.59%), Postives = 72/82 (87.80%), Query Frame = 0 

Query: 61  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 120
           H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI
Sbjct: 59  HGDGLQGRLPSQHLDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 118

Query: 121 SFTTAPAALANCPLFSSVISML 143
           SF TAPAALANCP F SVISML
Sbjct: 119 SFATAPAALANCPPFPSVISML 140

[Close]
BLAST of Lsi07G005390 vs. ExPASy TrEMBL
Match: A0A4Y1QZ52 (Uncharacterized protein ycf72 OS=Prunus dulcis OX=3755 GN=Prudu_006154 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.2e-31
Identity = 71/82 (86.59%), Postives = 72/82 (87.80%), Query Frame = 0 

Query: 61  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 120
           H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI
Sbjct: 83  HGDGLQGRLPSQHLDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 142

Query: 121 SFTTAPAALANCPLFSSVISML 143
           SF TAPAALANCP F SVISML
Sbjct: 143 SFATAPAALANCPPFPSVISML 164

[Close]
BLAST of Lsi07G005390 vs. ExPASy TrEMBL
Match: A0A2K1YGV4 (Uncharacterized protein ycf72 (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_011G074300 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.1e-30
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDP LPKLFW TPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPA
Sbjct: 32  RLPSQHLDPTLPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPA 91

Query: 128 ALANCPLFSSVISML 143
           ALANCP   SVISML
Sbjct: 92  ALANCPPLPSVISML 106

[Close]
BLAST of Lsi07G005390 vs. ExPASy TrEMBL
Match: A0A2N9IB45 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48963 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.1e-30
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPKLFW TP  PTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPA
Sbjct: 299 RLPSQHLDPALPKLFWFTPTLPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPA 358

Query: 128 ALANCPLFSSVISML 143
           ALANCP F SVISML
Sbjct: 359 ALANCPPFPSVISML 373

[Close]
BLAST of Lsi07G005390 vs. NCBI nr
Match: KAG7012670.1 (putative protein ycf72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.6 bits (366), Expect = 5.1e-31
Identity = 72/82 (87.80%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 61  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 120
           H D    +LPSQHLDPALPKLFW TPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI
Sbjct: 51  HGDGLQGRLPSQHLDPALPKLFWFTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 110

Query: 121 SFTTAPAALANCPLFSSVISML 143
           SF TAPAALANCP F SVISML
Sbjct: 111 SFATAPAALANCPPFPSVISML 132

[Close]
BLAST of Lsi07G005390 vs. NCBI nr
Match: KAF1876810.1 (hypothetical protein Lal_00035372 [Lupinus albus])

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-30
Identity = 71/82 (86.59%), Postives = 72/82 (87.80%), Query Frame = 0 

Query: 61  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 120
           H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI
Sbjct: 59  HGDGLQGRLPSQHLDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 118

Query: 121 SFTTAPAALANCPLFSSVISML 143
           SF TAPAALANCP F SVISML
Sbjct: 119 SFATAPAALANCPPFPSVISML 140

[Close]
BLAST of Lsi07G005390 vs. NCBI nr
Match: KAF1855826.1 (hypothetical protein Lal_00045189 [Lupinus albus] >KAF1876760.1 hypothetical protein Lal_00044211 [Lupinus albus] >KAF1876786.1 hypothetical protein Lal_00043616 [Lupinus albus])

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-30
Identity = 71/82 (86.59%), Postives = 72/82 (87.80%), Query Frame = 0 

Query: 61  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 120
           H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI
Sbjct: 59  HGDGLQGRLPSQHLDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 118

Query: 121 SFTTAPAALANCPLFSSVISML 143
           SF TAPAALANCP F SVISML
Sbjct: 119 SFATAPAALANCPPFPSVISML 140

[Close]
BLAST of Lsi07G005390 vs. NCBI nr
Match: BBG97133.1 (hypothetical protein Prudu_006154 [Prunus dulcis])

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-30
Identity = 71/82 (86.59%), Postives = 72/82 (87.80%), Query Frame = 0 

Query: 61  HLDPALPKLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 120
           H D    +LPSQHLDPALPKLFW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI
Sbjct: 83  HGDGLQGRLPSQHLDPALPKLFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAI 142

Query: 121 SFTTAPAALANCPLFSSVISML 143
           SF TAPAALANCP F SVISML
Sbjct: 143 SFATAPAALANCPPFPSVISML 164

[Close]
BLAST of Lsi07G005390 vs. NCBI nr
Match: KAG5070533.1 (hypothetical protein JHK85_002910 [Glycine max])

HSP 1 Score: 141.7 bits (356), Expect = 7.3e-30
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 0 

Query: 68  KLPSQHLDPALPKLFWVTPAFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFTTAPA 127
           +LPSQHLDPALPK FW TP FPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISF TAPA
Sbjct: 353 RLPSQHLDPALPKFFWFTPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPA 412

Query: 128 ALANCPLFSSVISML 143
           ALANCP F SVISML
Sbjct: 413 ALANCPPFPSVISML 427

The following BLAST results are available for this feature:
BLAST of Lsi07G005390 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6ENC94.6e-2778.67Uncharacterized protein ycf72 OS=Oryza nivara OX=4536 GN=ycf72-1 PE=3 SV=1[more]
P0C3084.6e-2778.67Uncharacterized protein ycf72 OS=Oryza sativa OX=4530 GN=ycf72-1 PE=3 SV=1[more]
P0C3094.6e-2778.67Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica OX=39946 GN=ycf72-1 ... [more]
Q369964.6e-2778.67Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica OX=39947 GN=ycf72-... [more]
Q370821.8e-2677.33Uncharacterized protein ycf72 OS=Zea mays OX=4577 GN=ycf72-1 PE=3 SV=1[more]
BLAST of Lsi07G005390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5MQL37.2e-3186.59Uncharacterized protein ycf72 OS=Lupinus albus OX=3870 GN=Lal_00043616 PE=3 SV=1[more]
A0A6A5N0B07.2e-3186.59Uncharacterized protein ycf72 OS=Lupinus albus OX=3870 GN=Lal_00035372 PE=3 SV=1[more]
A0A4Y1QZ527.2e-3186.59Uncharacterized protein ycf72 OS=Prunus dulcis OX=3755 GN=Prudu_006154 PE=3 SV=1[more]
A0A2K1YGV46.1e-3090.67Uncharacterized protein ycf72 (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR... [more]
A0A2N9IB456.1e-3090.67Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48963 PE=3 SV=1[more]
BLAST of Lsi07G005390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012670.15.1e-3187.80putative protein ycf72, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAF1876810.11.5e-3086.59hypothetical protein Lal_00035372 [Lupinus albus][more]
KAF1855826.11.5e-3086.59hypothetical protein Lal_00045189 [Lupinus albus] >KAF1876760.1 hypothetical pro... [more]
BBG97133.11.5e-3086.59hypothetical protein Prudu_006154 [Prunus dulcis][more]
KAG5070533.17.3e-3090.67hypothetical protein JHK85_002910 [Glycine max][more]
BLAST of Lsi07G005390 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038860Uncharacterized protein ycf72PANTHERPTHR37377RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAINcoord: 68..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G005390.1Lsi07G005390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0009635 response to herbicide
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0009523 photosystem II
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome