Lsi07G005200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G005200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ethylene-responsive transcription factor TINY
Location	chr07: 5483691 .. 5484302 (-)
RNA-Seq Expression	Lsi07G005200
Synteny	Lsi07G005200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAATCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGAGGGATCGAGAACAGAGGGATTTGAAACACCCAATTTACAGAGGCGTACGGAGGAGGAGTTGGGGCAAATGGGTGTCGGAGATCCGGCAGCCGAGGAAGAAATCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCACACGATGTGGCGGCGCTCAGTATCAAAGGTGATTCGGCAAAAGCCATTCTCAATTTCCCTCAACTCGCTGGTTTGCTACCCCGGCCGGTGTCGTTAATGCCGAGGGATATTCAAGAGGCGGCTGCCAAGGCGGCAGCGATGGTCGATTTCGATTCCACTACGGCGTTGTTTTCGTCGTCGAATGATGAAGAAGGGTCAGACGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTAGCGGCCGGGGAAATGGATTTCTGTGCAGTGTTTTCAGATCAGAGTACGACCCCGGTTACCTTCGACTGCCGCGATTGGGATTGA

mRNA sequence

ATGGCGGAATCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGAGGGATCGAGAACAGAGGGATTTGAAACACCCAATTTACAGAGGCGTACGGAGGAGGAGTTGGGGCAAATGGGTGTCGGAGATCCGGCAGCCGAGGAAGAAATCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCACACGATGTGGCGGCGCTCAGTATCAAAGGTGATTCGGCAAAAGCCATTCTCAATTTCCCTCAACTCGCTGGTTTGCTACCCCGGCCGGTGTCGTTAATGCCGAGGGATATTCAAGAGGCGGCTGCCAAGGCGGCAGCGATGGTCGATTTCGATTCCACTACGGCGTTGTTTTCGTCGTCGAATGATGAAGAAGGGTCAGACGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTAGCGGCCGGGGAAATGGATTTCTGTGCAGTGTTTTCAGATCAGAGTACGACCCCGGTTACCTTCGACTGCCGCGATTGGGATTGA

Coding sequence (CDS)

ATGGCGGAATCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGAGGGATCGAGAACAGAGGGATTTGAAACACCCAATTTACAGAGGCGTACGGAGGAGGAGTTGGGGCAAATGGGTGTCGGAGATCCGGCAGCCGAGGAAGAAATCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCACACGATGTGGCGGCGCTCAGTATCAAAGGTGATTCGGCAAAAGCCATTCTCAATTTCCCTCAACTCGCTGGTTTGCTACCCCGGCCGGTGTCGTTAATGCCGAGGGATATTCAAGAGGCGGCTGCCAAGGCGGCAGCGATGGTCGATTTCGATTCCACTACGGCGTTGTTTTCGTCGTCGAATGATGAAGAAGGGTCAGACGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTAGCGGCCGGGGAAATGGATTTCTGTGCAGTGTTTTCAGATCAGAGTACGACCCCGGTTACCTTCGACTGCCGCGATTGGGATTGA

Protein sequence

MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSTTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAGEMDFCAVFSDQSTTPVTFDCRDWD

Homology

[Close]

BLAST of Lsi07G005200 vs. ExPASy Swiss-Prot
Match: Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.9e-39
Identity = 103/189 (54.50%), Postives = 123/189 (65.08%), Query Frame = 0


Query: 4   SNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTF 63
           + +W + +   E +  K++  +    KHP+YRGVR+R+WGKWVSEIR+PRKKSRIWLGTF
Sbjct: 7   TKSWEASAVRQENEEEKKKPVKDSG-KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTF 66

Query: 64  TTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAM---V 123
            + EMAARAHDVAALSIKG  A AILNFP LAG  PRP SL PRDIQ AA KAA M    
Sbjct: 67  PSPEMAARAHDVAALSIKG--ASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQ 126

Query: 124 DFDSTTAL-FSSSNDEE-----------GSDELGEIVELPNIEEEI--RAESWNEFEFID 176
            F S+++L FSSS               GS+ELGEIVELP++        +  NEF F D
Sbjct: 127 SFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSD 186

[Close]

BLAST of Lsi07G005200 vs. ExPASy Swiss-Prot
Match: Q9LYD3 (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-38
Identity = 103/194 (53.09%), Postives = 128/194 (65.98%), Query Frame = 0


Query: 2   AESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLG 61
           +ES++ + +S++ + ++  +R R+    KHP+YRGVR R+WGKWVSEIR+PRKKSRIWLG
Sbjct: 21  SESDSVSDKSKAEQSEKKTKRGRDSG--KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG 80

Query: 62  TFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAM-- 121
           TF T EMAARAHDVAALSIKG +  AILNFP+LA   PRPVSL PRDIQ AA KAA M  
Sbjct: 81  TFPTPEMAARAHDVAALSIKGTA--AILNFPELADSFPRPVSLSPRDIQTAALKAAHMEP 140

Query: 122 -VDFDSTTALFSSSNDEEG--------------SDELGEIVELPNIEEEIRAES---WNE 176
              F S+T+  SS +                  S+ELGEIVELP++      +S    NE
Sbjct: 141 TTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNE 200

[Close]

BLAST of Lsi07G005200 vs. ExPASy Swiss-Prot
Match: Q9LU18 (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 GN=ERF036 PE=2 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 3.9e-36
Identity = 96/194 (49.48%), Postives = 118/194 (60.82%), Query Frame = 0


Query: 11  SESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAA 70
           + + + +R          ++HP+YRGVR RSWGKWVSEIRQPRKK+RIWLGTF TA+MAA
Sbjct: 38  NNTRKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAA 97

Query: 71  RAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV------DFDS 130
           RAHDVAAL+IKG S  A+LNFP+LA L PRP S  P DIQ AAA+AAAMV      + D 
Sbjct: 98  RAHDVAALTIKGSS--AVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDE 157

Query: 131 TTALFSSSN------DEEGSDELGEIVELPNIEEEIRAESWN---EFEFIDSVDWWGNPP 190
                 SS       + E  + L +IVELPNIEE    ES     +  + +  D W  PP
Sbjct: 158 APEAPPSSESSYVAAESEDEERLEKIVELPNIEEGSYDESVTSRADLAYSEPFDCWVYPP 217

[Close]

BLAST of Lsi07G005200 vs. ExPASy Swiss-Prot
Match: Q9M080 (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 GN=ERF043 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.3e-35
Identity = 95/181 (52.49%), Postives = 116/181 (64.09%), Query Frame = 0


Query: 23  DREQRD-LKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIK 82
           D+E+++  K P+YRGVR RSWGKWVSEIR+PRKKSRIWLGTF TAEMA RAHDVAA+SIK
Sbjct: 7   DKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIK 66

Query: 83  GDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDST---------------- 142
           G S  AILNFP+L+ LLPRPVSL PRD++ AA KAA M DFD+T                
Sbjct: 67  GTS--AILNFPELSKLLPRPVSLSPRDVRAAATKAALM-DFDTTAFRSDTETSETTTSNK 126

Query: 143 ---------TALFSSSN--------DEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSV 170
                    T  FSSS+        +   SD+L EIV+LP++   +     NEF   DS+
Sbjct: 127 MSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNES--NEFVIFDSL 182

[Close]

BLAST of Lsi07G005200 vs. ExPASy Swiss-Prot
Match: O80654 (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 GN=ERF037 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-33
Identity = 95/193 (49.22%), Postives = 116/193 (60.10%), Query Frame = 0


Query: 25  EQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDS 84
           ++R    P YRGVR R+WGKWVSEIR+PRKKSRIWLGTF+T EMAARAHD AAL+IKG S
Sbjct: 34  KKRVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTS 93

Query: 85  AKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAM---------VDFDSTTAL------- 144
             A+LNFP+LA  LPRP S  PRD+Q AAA AAAM         V  D TT +       
Sbjct: 94  --AVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVIAPAETQL 153

Query: 145 ------------FSSSNDEEGS--DELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNP 188
                        S S++E  S  +EL EIVELP++E     ES +EF ++DS      P
Sbjct: 154 SSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETSY-DESLSEFVYVDS----AYP 213

[Close]

BLAST of Lsi07G005200 vs. ExPASy TrEMBL
Match: A0A5D3C9I7 (Ethylene-responsive transcription factor TINY OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00580 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.1e-97
Identity = 185/203 (91.13%), Postives = 189/203 (93.10%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAESNNWNSESES EMKRGKQRD+EQRD KHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL
Sbjct: 1   MAESNNWNSESESREMKRGKQRDQEQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTTAEMAARAHDVAALSIKGDSA+AILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV
Sbjct: 61  GTFTTAEMAARAHDVAALSIKGDSARAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120

Query: 121 DFDSTTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAGE 180
           DFDS T  F  SN EEGSDELGEIVELPNIEE+IRAESWNEFEFIDSVDWWGNPP  A E
Sbjct: 121 DFDSETVSF--SNGEEGSDELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFTAAE 180

Query: 181 MDFCAVFSDQSTTPVTFDCRDWD 204
           MDFCAVFSDQST PVTFD  DW+
Sbjct: 181 MDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Lsi07G005200 vs. ExPASy TrEMBL
Match: A0A1S3BHN5 (ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC103489964 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.1e-97
Identity = 185/203 (91.13%), Postives = 189/203 (93.10%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAESNNWNSESES EMKRGKQRD+EQRD KHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL
Sbjct: 1   MAESNNWNSESESREMKRGKQRDQEQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTTAEMAARAHDVAALSIKGDSA+AILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV
Sbjct: 61  GTFTTAEMAARAHDVAALSIKGDSARAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120

Query: 121 DFDSTTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAGE 180
           DFDS T  F  SN EEGSDELGEIVELPNIEE+IRAESWNEFEFIDSVDWWGNPP  A E
Sbjct: 121 DFDSETVSF--SNGEEGSDELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFTAAE 180

Query: 181 MDFCAVFSDQSTTPVTFDCRDWD 204
           MDFCAVFSDQST PVTFD  DW+
Sbjct: 181 MDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Lsi07G005200 vs. ExPASy TrEMBL
Match: A0A6J1IP61 (ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 GN=LOC111479284 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.7e-88
Identity = 173/205 (84.39%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAE NNWNSES+  EMKRG QRD+     KHPIYRGVR+RSWGKWVSEIRQPRKKSRIWL
Sbjct: 1   MAEPNNWNSESDGAEMKRGNQRDQ-----KHPIYRGVRKRSWGKWVSEIRQPRKKSRIWL 60

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQ AAAKAAAMV
Sbjct: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV 120

Query: 121 DFD-STTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAG 180
           DFD +TTA FSSSNDE GSDELGEIVELPNIEE+IRAESW+EFEFIDSVDWWGNPP  A 
Sbjct: 121 DFDTTTTASFSSSNDEGGSDELGEIVELPNIEEDIRAESWSEFEFIDSVDWWGNPPFVAA 180

Query: 181 EMDFCAVFSDQS-TTPVTFDCRDWD 204
           EMDFC +F+DQS TT  TF+  DW+
Sbjct: 181 EMDFCPLFADQSTTTSATFNGGDWE 200

[Close]

BLAST of Lsi07G005200 vs. ExPASy TrEMBL
Match: A0A6J1GVC4 (ethylene-responsive transcription factor TINY-like OS=Cucurbita moschata OX=3662 GN=LOC111457824 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 171/205 (83.41%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAE NNWNSES+ TE+KRG QRD+     KHPIYRGVR+RSWGKWVSEIRQPRKKSRIWL
Sbjct: 1   MAEPNNWNSESDGTELKRGNQRDQ-----KHPIYRGVRKRSWGKWVSEIRQPRKKSRIWL 60

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQ AAAKAAAMV
Sbjct: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV 120

Query: 121 DFD-STTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAG 180
           DFD +TTA FSSSN E GSDELGEIVELPNIEE+IRAE+W+EFEFIDSVDWWGNPP  A 
Sbjct: 121 DFDTTTTASFSSSNYEGGSDELGEIVELPNIEEDIRAETWSEFEFIDSVDWWGNPPFVAA 180

Query: 181 EMDFCAVFSDQS-TTPVTFDCRDWD 204
           EMDFC +F+DQS TT  TF+  DW+
Sbjct: 181 EMDFCPLFADQSTTTSATFNGGDWE 200

[Close]

BLAST of Lsi07G005200 vs. ExPASy TrEMBL
Match: A0A6J1K8P5 (ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 GN=LOC111492697 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.7e-79
Identity = 160/203 (78.82%), Postives = 168/203 (82.76%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAE++N N ESESTE+KRG +        KH IYRGVR+RSWGKWVSEIRQPRKKSRIWL
Sbjct: 1   MAEASNSNLESESTEIKRGNR--------KHQIYRGVRKRSWGKWVSEIRQPRKKSRIWL 60

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTT EMAARAHDVA LSIKGDSAK ILNFPQLAGLLPRPVSLMPRDIQ AAAKAAAMV
Sbjct: 61  GTFTTPEMAARAHDVALLSIKGDSAKPILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV 120

Query: 121 DFDSTTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAGE 180
           DFDST    SSSNDEEGSDELGEIVELPNIEEEI AESWN+FE +DSVDWWGNPP    E
Sbjct: 121 DFDSTMPTTSSSNDEEGSDELGEIVELPNIEEEISAESWNKFELVDSVDWWGNPPYTVAE 180

Query: 181 MDFCAVFSDQSTTPVTFDCRDWD 204
            DF   FS QST PV FD  DW+
Sbjct: 181 TDFVGGFSYQSTIPVIFDGGDWE 195

[Close]

BLAST of Lsi07G005200 vs. NCBI nr
Match: XP_038906604.1 (ethylene-responsive transcription factor TINY-like [Benincasa hispida])

HSP 1 Score: 365.5 bits (937), Expect = 2.9e-97
Identity = 183/203 (90.15%), Postives = 191/203 (94.09%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAE NNWNSESE+TE+KRGKQ D+EQRD KHPIYRGVR+RSWGKWVSEIRQPRKKSRIWL
Sbjct: 32  MAEPNNWNSESENTEIKRGKQGDQEQRDQKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWL 91

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQ+AAAKAAAMV
Sbjct: 92  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQKAAAKAAAMV 151

Query: 121 DFDSTTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAGE 180
           DFDS T   SSSND+EGSDELGEIVELPNIE +IRAESWNEFEFIDSVDWWGNPP AAGE
Sbjct: 152 DFDSATVSLSSSNDDEGSDELGEIVELPNIEGDIRAESWNEFEFIDSVDWWGNPPFAAGE 211

Query: 181 MDFCAVFSDQSTTPVTFDCRDWD 204
           MDFCAVFSDQST PVTFD  DW+
Sbjct: 212 MDFCAVFSDQSTPPVTFDGGDWE 234

[Close]

BLAST of Lsi07G005200 vs. NCBI nr
Match: XP_008447541.1 (PREDICTED: ethylene-responsive transcription factor TINY [Cucumis melo] >KAA0050826.1 ethylene-responsive transcription factor TINY [Cucumis melo var. makuwa] >TYK08521.1 ethylene-responsive transcription factor TINY [Cucumis melo var. makuwa])

HSP 1 Score: 364.0 bits (933), Expect = 8.4e-97
Identity = 185/203 (91.13%), Postives = 189/203 (93.10%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAESNNWNSESES EMKRGKQRD+EQRD KHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL
Sbjct: 1   MAESNNWNSESESREMKRGKQRDQEQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTTAEMAARAHDVAALSIKGDSA+AILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV
Sbjct: 61  GTFTTAEMAARAHDVAALSIKGDSARAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120

Query: 121 DFDSTTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAGE 180
           DFDS T  F  SN EEGSDELGEIVELPNIEE+IRAESWNEFEFIDSVDWWGNPP  A E
Sbjct: 121 DFDSETVSF--SNGEEGSDELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFTAAE 180

Query: 181 MDFCAVFSDQSTTPVTFDCRDWD 204
           MDFCAVFSDQST PVTFD  DW+
Sbjct: 181 MDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Lsi07G005200 vs. NCBI nr
Match: XP_031737929.1 (ethylene-responsive transcription factor TINY-like [Cucumis sativus] >KAE8650718.1 hypothetical protein Csa_010130 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 7.1e-96
Identity = 184/203 (90.64%), Postives = 188/203 (92.61%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAESNNWNSESES EMKRGKQR++EQRD KHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL
Sbjct: 1   MAESNNWNSESESREMKRGKQRNQEQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV
Sbjct: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120

Query: 121 DFDSTTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAGE 180
           DFDS T  F  SN EEGSDEL EIVELPNIEE+IRAESWNEFEFIDSVDWWGNPP  A E
Sbjct: 121 DFDSETVSF--SNGEEGSDELAEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFTAAE 180

Query: 181 MDFCAVFSDQSTTPVTFDCRDWD 204
           MDFCAVFSDQST PVTFD  DW+
Sbjct: 181 MDFCAVFSDQSTAPVTFDRGDWE 201

[Close]

BLAST of Lsi07G005200 vs. NCBI nr
Match: XP_022979607.1 (ethylene-responsive transcription factor TINY-like [Cucurbita maxima])

HSP 1 Score: 333.2 bits (853), Expect = 1.6e-87
Identity = 173/205 (84.39%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAE NNWNSES+  EMKRG QRD+     KHPIYRGVR+RSWGKWVSEIRQPRKKSRIWL
Sbjct: 1   MAEPNNWNSESDGAEMKRGNQRDQ-----KHPIYRGVRKRSWGKWVSEIRQPRKKSRIWL 60

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQ AAAKAAAMV
Sbjct: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV 120

Query: 121 DFD-STTALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAG 180
           DFD +TTA FSSSNDE GSDELGEIVELPNIEE+IRAESW+EFEFIDSVDWWGNPP  A 
Sbjct: 121 DFDTTTTASFSSSNDEGGSDELGEIVELPNIEEDIRAESWSEFEFIDSVDWWGNPPFVAA 180

Query: 181 EMDFCAVFSDQS-TTPVTFDCRDWD 204
           EMDFC +F+DQS TT  TF+  DW+
Sbjct: 181 EMDFCPLFADQSTTTSATFNGGDWE 200

[Close]

BLAST of Lsi07G005200 vs. NCBI nr
Match: XP_023528290.1 (ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 1.0e-86
Identity = 172/205 (83.90%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MAESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWL 60
           MAE NNWNSES+ TE+KRG QRD+     KHPIYRGVR+RSWGKWVSEIRQPRKKSRIWL
Sbjct: 1   MAEPNNWNSESDGTELKRGNQRDQ-----KHPIYRGVRKRSWGKWVSEIRQPRKKSRIWL 60

Query: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV 120
           GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQ AAAKAAAMV
Sbjct: 61  GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV 120

Query: 121 DFDST-TALFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNPPLAAG 180
           DFD+T TA FSSSN E GSDELGEIVELPNIEE+IRAESW+EFEFIDSVDWWGNPP  A 
Sbjct: 121 DFDTTRTASFSSSNYEGGSDELGEIVELPNIEEDIRAESWSEFEFIDSVDWWGNPPFVAA 180

Query: 181 EMDFCAVFSDQS-TTPVTFDCRDWD 204
           EMDFC +F+DQS TT  TF+  DW+
Sbjct: 181 EMDFCPLFADQSTTTSATFNGGDWE 200

[Close]

BLAST of Lsi07G005200 vs. TAIR 10
Match: AT5G25810.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-40
Identity = 103/189 (54.50%), Postives = 123/189 (65.08%), Query Frame = 0


Query: 4   SNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTF 63
           + +W + +   E +  K++  +    KHP+YRGVR+R+WGKWVSEIR+PRKKSRIWLGTF
Sbjct: 7   TKSWEASAVRQENEEEKKKPVKDSG-KHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTF 66

Query: 64  TTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAM---V 123
            + EMAARAHDVAALSIKG  A AILNFP LAG  PRP SL PRDIQ AA KAA M    
Sbjct: 67  PSPEMAARAHDVAALSIKG--ASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQ 126

Query: 124 DFDSTTAL-FSSSNDEE-----------GSDELGEIVELPNIEEEI--RAESWNEFEFID 176
            F S+++L FSSS               GS+ELGEIVELP++        +  NEF F D
Sbjct: 127 SFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSD 186

[Close]

BLAST of Lsi07G005200 vs. TAIR 10
Match: AT5G11590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 7.7e-40
Identity = 103/194 (53.09%), Postives = 128/194 (65.98%), Query Frame = 0


Query: 2   AESNNWNSESESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLG 61
           +ES++ + +S++ + ++  +R R+    KHP+YRGVR R+WGKWVSEIR+PRKKSRIWLG
Sbjct: 21  SESDSVSDKSKAEQSEKKTKRGRDSG--KHPVYRGVRMRNWGKWVSEIREPRKKSRIWLG 80

Query: 62  TFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAM-- 121
           TF T EMAARAHDVAALSIKG +  AILNFP+LA   PRPVSL PRDIQ AA KAA M  
Sbjct: 81  TFPTPEMAARAHDVAALSIKGTA--AILNFPELADSFPRPVSLSPRDIQTAALKAAHMEP 140

Query: 122 -VDFDSTTALFSSSNDEEG--------------SDELGEIVELPNIEEEIRAES---WNE 176
              F S+T+  SS +                  S+ELGEIVELP++      +S    NE
Sbjct: 141 TTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNE 200

[Close]

BLAST of Lsi07G005200 vs. TAIR 10
Match: AT3G16280.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 152.9 bits (385), Expect = 2.7e-37
Identity = 96/194 (49.48%), Postives = 118/194 (60.82%), Query Frame = 0


Query: 11  SESTEMKRGKQRDREQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAA 70
           + + + +R          ++HP+YRGVR RSWGKWVSEIRQPRKK+RIWLGTF TA+MAA
Sbjct: 38  NNTRKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAA 97

Query: 71  RAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMV------DFDS 130
           RAHDVAAL+IKG S  A+LNFP+LA L PRP S  P DIQ AAA+AAAMV      + D 
Sbjct: 98  RAHDVAALTIKGSS--AVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKLLEKDE 157

Query: 131 TTALFSSSN------DEEGSDELGEIVELPNIEEEIRAESWN---EFEFIDSVDWWGNPP 190
                 SS       + E  + L +IVELPNIEE    ES     +  + +  D W  PP
Sbjct: 158 APEAPPSSESSYVAAESEDEERLEKIVELPNIEEGSYDESVTSRADLAYSEPFDCWVYPP 217

[Close]

BLAST of Lsi07G005200 vs. TAIR 10
Match: AT4G32800.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-36
Identity = 95/181 (52.49%), Postives = 116/181 (64.09%), Query Frame = 0


Query: 23  DREQRD-LKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIK 82
           D+E+++  K P+YRGVR RSWGKWVSEIR+PRKKSRIWLGTF TAEMA RAHDVAA+SIK
Sbjct: 7   DKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIK 66

Query: 83  GDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDST---------------- 142
           G S  AILNFP+L+ LLPRPVSL PRD++ AA KAA M DFD+T                
Sbjct: 67  GTS--AILNFPELSKLLPRPVSLSPRDVRAAATKAALM-DFDTTAFRSDTETSETTTSNK 126

Query: 143 ---------TALFSSSN--------DEEGSDELGEIVELPNIEEEIRAESWNEFEFIDSV 170
                    T  FSSS+        +   SD+L EIV+LP++   +     NEF   DS+
Sbjct: 127 MSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNES--NEFVIFDSL 182

[Close]

BLAST of Lsi07G005200 vs. TAIR 10
Match: AT1G77200.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-34
Identity = 95/193 (49.22%), Postives = 116/193 (60.10%), Query Frame = 0


Query: 25  EQRDLKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDS 84
           ++R    P YRGVR R+WGKWVSEIR+PRKKSRIWLGTF+T EMAARAHD AAL+IKG S
Sbjct: 34  KKRVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTS 93

Query: 85  AKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAM---------VDFDSTTAL------- 144
             A+LNFP+LA  LPRP S  PRD+Q AAA AAAM         V  D TT +       
Sbjct: 94  --AVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVIAPAETQL 153

Query: 145 ------------FSSSNDEEGS--DELGEIVELPNIEEEIRAESWNEFEFIDSVDWWGNP 188
                        S S++E  S  +EL EIVELP++E     ES +EF ++DS      P
Sbjct: 154 SSSSYSTCTSSSLSPSSEEAASTAEELSEIVELPSLETSY-DESLSEFVYVDS----AYP 213

The following BLAST results are available for this feature:

BLAST of Lsi07G005200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39127	4.9e-39	54.50	Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LYD3	1.1e-38	53.09	Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q9LU18	3.9e-36	49.48	Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9M080	3.3e-35	52.49	Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 ...	[more]
O80654	5.2e-33	49.22	Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lsi07G005200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9I7	4.1e-97	91.13	Ethylene-responsive transcription factor TINY OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BHN5	4.1e-97	91.13	ethylene-responsive transcription factor TINY OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1IP61	7.7e-88	84.39	ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1GVC4	1.1e-86	83.41	ethylene-responsive transcription factor TINY-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1K8P5	1.7e-79	78.82	ethylene-responsive transcription factor TINY-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of Lsi07G005200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906604.1	2.9e-97	90.15	ethylene-responsive transcription factor TINY-like [Benincasa hispida]	[more]
XP_008447541.1	8.4e-97	91.13	PREDICTED: ethylene-responsive transcription factor TINY [Cucumis melo] >KAA0050...	[more]
XP_031737929.1	7.1e-96	90.64	ethylene-responsive transcription factor TINY-like [Cucumis sativus] >KAE8650718...	[more]
XP_022979607.1	1.6e-87	84.39	ethylene-responsive transcription factor TINY-like [Cucurbita maxima]	[more]
XP_023528290.1	1.0e-86	83.90	ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi07G005200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25810.1	3.5e-40	54.50	Integrase-type DNA-binding superfamily protein	[more]
AT5G11590.1	7.7e-40	53.09	Integrase-type DNA-binding superfamily protein	[more]
AT3G16280.1	2.7e-37	49.48	Integrase-type DNA-binding superfamily protein	[more]
AT4G32800.1	2.3e-36	52.49	Integrase-type DNA-binding superfamily protein	[more]
AT1G77200.1	3.7e-34	49.22	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 56..72 score: 69.52 coord: 34..45 score: 71.67
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 33..98 e-value: 3.3E-34 score: 129.7
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 32..82 e-value: 9.2E-14 score: 51.4
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 33..92 score: 23.221937
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 32..92 e-value: 3.87836E-30 score: 103.891
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 33..93 e-value: 4.0E-24 score: 86.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..32
None	No IPR available	PANTHER	PTHR31985	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	coord: 9..191
None	No IPR available	PANTHER	PTHR31985:SF220	DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED	coord: 9..191
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 33..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G005200.1	Lsi07G005200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity