Lsi07G004940 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G004940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Auxin-responsive protein
Location	chr07: 5191818 .. 5192378 (-)
RNA-Seq Expression	Lsi07G004940
Synteny	Lsi07G004940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCCAATGGAGTTGAACTTGAGATCACTGAGCTCAGATTAGGGCTTCCGGGGAGTGGCTGCAGCCATACCCCAAGTTCAAAAAATGAGAAGAAAAGGGTTTTCTCTGAGAGTAGCACAACCAACGACGGCGGTGACCAACGACGATTCCCAAAGAGGAACCAAGTTGTGGGGTGGCCACCGGTTTGTTCTCACCGAAGAAGGAGTAGCGGTAACGATAAAGATCTATCTGAAACGGAAACTACTCCGAAGATGTATGTGAAAATAAGTATGGATGGTGCTCCTTATCTTAGAAAAGTTGATCTTGGAAGTTATAAAGAATATTCAAATCTTGTGGTGGCAATGGAGAATTTATTCGGCTCTGCAATCGGATGCTCTGACTTTGTCTTGATCTATGAAGATCGAGATGGCGATTGGATGCTCGTCGGCGATGTCCCGTGGAAGATGTTTGTTGAATCATGCAAGAGATTGAGAATAATGAAGAGATCCGAAGCTAAAGGATTTGAGATTCATGTCCCATCTCAAACCCTAAGTAGTAGTTCTTCAAAAGAACCATAA

mRNA sequence

ATGGCATCCAATGGAGTTGAACTTGAGATCACTGAGCTCAGATTAGGGCTTCCGGGGAGTGGCTGCAGCCATACCCCAAGTTCAAAAAATGAGAAGAAAAGGGTTTTCTCTGAGAGTAGCACAACCAACGACGGCGGTGACCAACGACGATTCCCAAAGAGGAACCAAGTTGTGGGGTGGCCACCGGTTTGTTCTCACCGAAGAAGGAGTAGCGGTAACGATAAAGATCTATCTGAAACGGAAACTACTCCGAAGATGTATGTGAAAATAAGTATGGATGGTGCTCCTTATCTTAGAAAAGTTGATCTTGGAAGTTATAAAGAATATTCAAATCTTGTGGTGGCAATGGAGAATTTATTCGGCTCTGCAATCGGATGCTCTGACTTTGTCTTGATCTATGAAGATCGAGATGGCGATTGGATGCTCGTCGGCGATGTCCCGTGGAAGATGTTTGTTGAATCATGCAAGAGATTGAGAATAATGAAGAGATCCGAAGCTAAAGGATTTGAGATTCATGTCCCATCTCAAACCCTAAGTAGTAGTTCTTCAAAAGAACCATAA

Coding sequence (CDS)

ATGGCATCCAATGGAGTTGAACTTGAGATCACTGAGCTCAGATTAGGGCTTCCGGGGAGTGGCTGCAGCCATACCCCAAGTTCAAAAAATGAGAAGAAAAGGGTTTTCTCTGAGAGTAGCACAACCAACGACGGCGGTGACCAACGACGATTCCCAAAGAGGAACCAAGTTGTGGGGTGGCCACCGGTTTGTTCTCACCGAAGAAGGAGTAGCGGTAACGATAAAGATCTATCTGAAACGGAAACTACTCCGAAGATGTATGTGAAAATAAGTATGGATGGTGCTCCTTATCTTAGAAAAGTTGATCTTGGAAGTTATAAAGAATATTCAAATCTTGTGGTGGCAATGGAGAATTTATTCGGCTCTGCAATCGGATGCTCTGACTTTGTCTTGATCTATGAAGATCGAGATGGCGATTGGATGCTCGTCGGCGATGTCCCGTGGAAGATGTTTGTTGAATCATGCAAGAGATTGAGAATAATGAAGAGATCCGAAGCTAAAGGATTTGAGATTCATGTCCCATCTCAAACCCTAAGTAGTAGTTCTTCAAAAGAACCATAA

Protein sequence

MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSESSTTNDGGDQRRFPKRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMENLFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPSQTLSSSSSKEP

Homology

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BLAST of Lsi07G004940 vs. ExPASy Swiss-Prot
Match: P13088 (Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-47
Identity = 102/187 (54.55%), Postives = 130/187 (69.52%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPS---SKNEKKRVFSE-------SSTTNDGGDQRR 60
           MA  G+ LEITELRLGLP +   H  S    KNEKKR FSE        ++++ GGD++ 
Sbjct: 1   MAKEGLGLEITELRLGLPDA--EHQVSVVNKKNEKKRAFSEIDDGVGDENSSSGGGDRKM 60

Query: 61  FPKRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYS 120
              ++QVVGWPPVCS+R+++S N       E   KMYVK+SMDGAP+LRK+DLG +K YS
Sbjct: 61  ETNKSQVVGWPPVCSYRKKNSMN-------EGASKMYVKVSMDGAPFLRKIDLGLHKGYS 120

Query: 121 NLVVAMENLFG--------SAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMK 170
           +L +A++ LFG             S+ V IYED+DGDWMLVGDVPW+MF+ESCKRLRIMK
Sbjct: 121 DLALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMK 178

[Close]

BLAST of Lsi07G004940 vs. ExPASy Swiss-Prot
Match: P32293 (Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.9e-46
Identity = 99/185 (53.51%), Postives = 126/185 (68.11%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEK--KRVFSE------SSTTNDGGDQRRFP 60
           MA  G+ LEITELRLGLP +      +   EK  KRVFSE       ++++ GG  R+  
Sbjct: 1   MAKEGLGLEITELRLGLPDAEHVAVANKNGEKKNKRVFSEIDDVGDENSSSGGGGDRKME 60

Query: 61  KRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNL 120
            +NQVVGWPPVCS+R+++S N+          KMYVK+SMDGAP+LRK+DLG +K YS+L
Sbjct: 61  NKNQVVGWPPVCSYRKKNSVNE--------ASKMYVKVSMDGAPFLRKMDLGMHKGYSDL 120

Query: 121 VVAMENLFG--------SAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRS 170
             A+E LFG          +   + V IYED+DGDWMLVGDVPW+MF+ESCKRLRIMKR+
Sbjct: 121 AFALEKLFGCYGMVEALKNVENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKRA 177

[Close]

BLAST of Lsi07G004940 vs. ExPASy Swiss-Prot
Match: O24541 (Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-44
Identity = 96/182 (52.75%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGC-SHTPSSKNE-KKRVFSESSTTNDGGDQ-RRFPKRNQV 60
           M    + LEITELRLGLPG+G  ++T   KN+ KKRVFS+    N   ++  +   +NQV
Sbjct: 1   MEKEDLGLEITELRLGLPGAGGENNTDKDKNKNKKRVFSDIEGENSSSEEDGKKETKNQV 60

Query: 61  VGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAME 120
           VGWPPVCS+R++++ N+         PK+YVK+SMDGAP+LRK+DL  +K YS+L  A++
Sbjct: 61  VGWPPVCSYRKKNTVNE---------PKLYVKVSMDGAPFLRKIDLAMHKGYSDLAFALD 120

Query: 121 NLFGSAIGC--------SDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGF 172
             FG    C        ++ V IYED+DGDWMLVGDVPW+MF ESCKRLRIMKRS+AKGF
Sbjct: 121 KFFGCYGICEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSDAKGF 173

[Close]

BLAST of Lsi07G004940 vs. ExPASy Swiss-Prot
Match: Q38824 (Auxin-responsive protein IAA6 OS=Arabidopsis thaliana OX=3702 GN=IAA6 PE=1 SV=2)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-40
Identity = 94/190 (49.47%), Postives = 119/190 (62.63%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTP--SSKNEKKRVFS------------ESSTTNDGG 60
           MA  G+ LEITELRLGLPG   S      S  +KKRV S            E+S  +   
Sbjct: 1   MAKEGLALEITELRLGLPGDNYSEISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSVE 60

Query: 61  DQRRFPKRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSY 120
           D+     ++Q VGWPPVCS+RR+ +      +E  +    YVK+SMDG PY+RK+DLGS 
Sbjct: 61  DESLPVVKSQAVGWPPVCSYRRKKN------NEEASKAIGYVKVSMDGVPYMRKIDLGSS 120

Query: 121 KEYSNLVVAMENLFGS-AIGCS------DFVLIYEDRDGDWMLVGDVPWKMFVESCKRLR 170
             Y NLV  +ENLFG   IG +      ++++IYED+D DWMLVGDVPW+MF ESCKRLR
Sbjct: 121 NSYINLVTVLENLFGCLGIGVAKEGKKCEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLR 180

[Close]

BLAST of Lsi07G004940 vs. ExPASy Swiss-Prot
Match: O24409 (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 94/195 (48.21%), Postives = 119/195 (61.03%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFS--------------ESSTTNDGG 60
           M   G+ LEITELRLGLPG       + K  KKR F+              ES   + GG
Sbjct: 1   MEKEGLGLEITELRLGLPG----RDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGG 60

Query: 61  DQRRF----PKRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVD 120
           D  +       ++QVVGWPPVCS+R+++S  +   + T      YVK+SMDG PYLRK+D
Sbjct: 61  DAEKVNDSPAAKSQVVGWPPVCSYRKKNSCKE---ASTTKVGLGYVKVSMDGVPYLRKMD 120

Query: 121 LGSYKEYSNLVVAMENLFG-SAIGCS-------DFVLIYEDRDGDWMLVGDVPWKMFVES 170
           LGS + Y +L  A++ LFG   IG +       ++V IYED+DGDWML GDVPW MF+ES
Sbjct: 121 LGSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFLES 180

[Close]

BLAST of Lsi07G004940 vs. ExPASy TrEMBL
Match: A0A5D3DAE6 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00030 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 163/187 (87.17%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSESSTTNDGGDQRRFPKRNQVVGW 60
           MASNGVELEITELRLGLPGSG  HT SSKNEKKRVFSESS+TN+ G  RRFPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGSCHTSSSKNEKKRVFSESSSTNNDGGDRRFPKRNQVVGW 60

Query: 61  PPVCSHRRRSSG--NDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMEN 120
           PPVCSHRRR+SG  N+K LSETE  PKMYVKI MDGAPYLRKVDLGS+K YS+LVVAMEN
Sbjct: 61  PPVCSHRRRNSGSSNNKGLSETE-APKMYVKIGMDGAPYLRKVDLGSHKGYSDLVVAMEN 120

Query: 121 LFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPSQTL 180
           LFGSA+GCSDFVLIYEDRDGDWML+GDVPW MF+ESCKRLRIMKRSEAKGFEIHVPS+TL
Sbjct: 121 LFGSALGCSDFVLIYEDRDGDWMLLGDVPWNMFIESCKRLRIMKRSEAKGFEIHVPSETL 180

Query: 181 SSSSSKE 186
           SSSSSKE
Sbjct: 181 SSSSSKE 186

[Close]

BLAST of Lsi07G004940 vs. ExPASy TrEMBL
Match: A0A1S3BI60 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489925 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.9e-85
Identity = 163/187 (87.17%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSESSTTNDGGDQRRFPKRNQVVGW 60
           MASNGVELEITELRLGLPGSG  HT SSKNEKKRVFSESS+TN+ G  RRFPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGSCHTSSSKNEKKRVFSESSSTNNDGGDRRFPKRNQVVGW 60

Query: 61  PPVCSHRRRSSG--NDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMEN 120
           PPVCSHRRR+SG  N+K LSETE  PKMYVKI MDGAPYLRKVDLGS+K YS+LVVAMEN
Sbjct: 61  PPVCSHRRRNSGSSNNKGLSETE-APKMYVKIGMDGAPYLRKVDLGSHKGYSDLVVAMEN 120

Query: 121 LFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPSQTL 180
           LFGSA+GCSDFVLIYEDRDGDWML+GDVPW MF+ESCKRLRIMKRSEAKGFEIHVPS+TL
Sbjct: 121 LFGSALGCSDFVLIYEDRDGDWMLLGDVPWNMFIESCKRLRIMKRSEAKGFEIHVPSETL 180

Query: 181 SSSSSKE 186
           SSSSSKE
Sbjct: 181 SSSSSKE 186

[Close]

BLAST of Lsi07G004940 vs. ExPASy TrEMBL
Match: A0A0A0L852 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G516540 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 8.1e-84
Identity = 162/187 (86.63%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSESSTTNDGGDQRRFPKRNQVVGW 60
           MASNGVELEITELRLGLPGSG   T SSKNEKKRVF ESS+TN+ G  + FPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 60

Query: 61  PPVCSHRRRS--SGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMEN 120
           PPVCSHRRRS  SGN+KDLSETE TPK+YVKISMDGAPYLRKVDLGS+K YS+LVVAMEN
Sbjct: 61  PPVCSHRRRSSGSGNNKDLSETE-TPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMEN 120

Query: 121 LFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPSQTL 180
           LFGSA+GCSDFVLIYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFEIHVPS+TL
Sbjct: 121 LFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETL 180

Query: 181 SSSSSKE 186
           SSSSSKE
Sbjct: 181 SSSSSKE 186

[Close]

BLAST of Lsi07G004940 vs. ExPASy TrEMBL
Match: A0A6J1GBF5 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111452638 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 6.2e-68
Identity = 144/194 (74.23%), Postives = 155/194 (79.90%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSE----------SSTTNDGGDQRR 60
           MASNG+ELEITELRLGLPGSG  HT SSK++ KRVFSE          SS   DGGD RR
Sbjct: 1   MASNGLELEITELRLGLPGSG--HTSSSKHDNKRVFSEMNGNEGGDERSSNDCDGGD-RR 60

Query: 61  FPKRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYS 120
             K+ QVVGWPPVCS+RRRS+GNDKDLSE   T KMYVK+SMDGAPYLRKVDLG +K YS
Sbjct: 61  CSKKTQVVGWPPVCSYRRRSNGNDKDLSE---TLKMYVKVSMDGAPYLRKVDLGMHKGYS 120

Query: 121 NLVVAMENLFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180
           +L +AMENLFG AIG SD+V IYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE
Sbjct: 121 DLGMAMENLFGCAIGSSDYVPIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180

Query: 181 IHVPSQTLSSSSSK 185
           I VP     SS  K
Sbjct: 181 IQVPKTRSCSSPRK 188

[Close]

BLAST of Lsi07G004940 vs. ExPASy TrEMBL
Match: A0A6J1KBS9 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111492883 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 143/194 (73.71%), Postives = 156/194 (80.41%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSE----------SSTTNDGGDQRR 60
           MASNG+ELEITELRLGLPGS   HT SSK++ KRVFSE          SS   DGGD RR
Sbjct: 1   MASNGLELEITELRLGLPGS--RHTSSSKHDNKRVFSEMNGNEGGDERSSNDCDGGD-RR 60

Query: 61  FPKRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYS 120
           + K+NQVVGWPPVCS+RRRS+GNDKDLS+   T KMYVK+SMDGAPYLRKVDLG +K YS
Sbjct: 61  YSKKNQVVGWPPVCSYRRRSNGNDKDLSK---TLKMYVKVSMDGAPYLRKVDLGMHKGYS 120

Query: 121 NLVVAMENLFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180
           +L +AMENLF  AIG SD+V IYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE
Sbjct: 121 DLGMAMENLFSCAIGSSDYVPIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180

Query: 181 IHVPSQTLSSSSSK 185
           I VP    SSS  K
Sbjct: 181 IQVPKTRSSSSPRK 188

[Close]

BLAST of Lsi07G004940 vs. NCBI nr
Match: XP_038875964.1 (auxin-induced protein 22C-like [Benincasa hispida])

HSP 1 Score: 327.0 bits (837), Expect = 1.0e-85
Identity = 170/187 (90.91%), Postives = 175/187 (93.58%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSESSTTNDGGDQRRFPKRNQVVGW 60
           MASNGVELEITEL LGLPGSG  HTPS KNEKKRVFSESS TND  D RRFPKRNQVVGW
Sbjct: 1   MASNGVELEITELTLGLPGSGGHHTPSPKNEKKRVFSESS-TND--DDRRFPKRNQVVGW 60

Query: 61  PPVCSHRRRS--SGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMEN 120
           PPVCSHRRRS  SGNDKDL ET+T+ KMYVKISMDGAPYLRKVDLGSYKEYS+LVVAMEN
Sbjct: 61  PPVCSHRRRSSGSGNDKDLYETKTS-KMYVKISMDGAPYLRKVDLGSYKEYSDLVVAMEN 120

Query: 121 LFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPSQTL 180
           LFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVP++TL
Sbjct: 121 LFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPTETL 180

Query: 181 SSSSSKE 186
           SSSSSKE
Sbjct: 181 SSSSSKE 183

[Close]

BLAST of Lsi07G004940 vs. NCBI nr
Match: XP_008447488.1 (PREDICTED: auxin-induced protein 22A-like [Cucumis melo] >KAA0050763.1 auxin-induced protein 22A-like [Cucumis melo var. makuwa] >TYK20440.1 auxin-induced protein 22A-like [Cucumis melo var. makuwa])

HSP 1 Score: 325.1 bits (832), Expect = 4.0e-85
Identity = 163/187 (87.17%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSESSTTNDGGDQRRFPKRNQVVGW 60
           MASNGVELEITELRLGLPGSG  HT SSKNEKKRVFSESS+TN+ G  RRFPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGSCHTSSSKNEKKRVFSESSSTNNDGGDRRFPKRNQVVGW 60

Query: 61  PPVCSHRRRSSG--NDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMEN 120
           PPVCSHRRR+SG  N+K LSETE  PKMYVKI MDGAPYLRKVDLGS+K YS+LVVAMEN
Sbjct: 61  PPVCSHRRRNSGSSNNKGLSETE-APKMYVKIGMDGAPYLRKVDLGSHKGYSDLVVAMEN 120

Query: 121 LFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPSQTL 180
           LFGSA+GCSDFVLIYEDRDGDWML+GDVPW MF+ESCKRLRIMKRSEAKGFEIHVPS+TL
Sbjct: 121 LFGSALGCSDFVLIYEDRDGDWMLLGDVPWNMFIESCKRLRIMKRSEAKGFEIHVPSETL 180

Query: 181 SSSSSKE 186
           SSSSSKE
Sbjct: 181 SSSSSKE 186

[Close]

BLAST of Lsi07G004940 vs. NCBI nr
Match: XP_004149851.2 (auxin-induced protein 22A [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 162/187 (86.63%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSESSTTNDGGDQRRFPKRNQVVGW 60
           MASNGVELEITELRLGLPGSG   T SSKNEKKRVF ESS+TN+ G  + FPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 60

Query: 61  PPVCSHRRRS--SGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMEN 120
           PPVCSHRRRS  SGN+KDLSETE TPK+YVKISMDGAPYLRKVDLGS+K YS+LVVAMEN
Sbjct: 61  PPVCSHRRRSSGSGNNKDLSETE-TPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMEN 120

Query: 121 LFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPSQTL 180
           LFGSA+GCSDFVLIYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFEIHVPS+TL
Sbjct: 121 LFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETL 180

Query: 181 SSSSSKE 186
           SSSSSKE
Sbjct: 181 SSSSSKE 186

[Close]

BLAST of Lsi07G004940 vs. NCBI nr
Match: KAE8650746.1 (hypothetical protein Csa_017652 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 1.7e-83
Identity = 162/187 (86.63%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSESSTTNDGGDQRRFPKRNQVVGW 60
           MASNGVELEITELRLGLPGSG   T SSKNEKKRVF ESS+TN+ G  + FPKRNQVVGW
Sbjct: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67

Query: 61  PPVCSHRRRS--SGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMEN 120
           PPVCSHRRRS  SGN+KDLSETE TPK+YVKISMDGAPYLRKVDLGS+K YS+LVVAMEN
Sbjct: 68  PPVCSHRRRSSGSGNNKDLSETE-TPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMEN 127

Query: 121 LFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPSQTL 180
           LFGSA+GCSDFVLIYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFEIHVPS+TL
Sbjct: 128 LFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETL 187

Query: 181 SSSSSKE 186
           SSSSSKE
Sbjct: 188 SSSSSKE 193

[Close]

BLAST of Lsi07G004940 vs. NCBI nr
Match: XP_023525671.1 (auxin-induced protein 22A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.2 bits (692), Expect = 6.8e-69
Identity = 145/194 (74.74%), Postives = 158/194 (81.44%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSE----------SSTTNDGGDQRR 60
           MASNG+ELEITELRLGLPGSG  HT +SK++ KRVFSE          SST  DG D+RR
Sbjct: 1   MASNGLELEITELRLGLPGSG--HTSTSKHDNKRVFSEMNANEGGDERSSTDCDGADRRR 60

Query: 61  FPKRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYS 120
             K+NQVVGWPPVCS+RRRS+GNDKDLSET    KMYVK+SMDGAPYLRKVDLG +K YS
Sbjct: 61  -SKKNQVVGWPPVCSYRRRSNGNDKDLSETS---KMYVKVSMDGAPYLRKVDLGMHKGYS 120

Query: 121 NLVVAMENLFGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180
           +L +AMENLFG AIG SD+V IYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE
Sbjct: 121 DLGMAMENLFGCAIGSSDYVPIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180

Query: 181 IHVPSQTLSSSSSK 185
           I VP    SSS  K
Sbjct: 181 IQVPKTRSSSSPRK 188

[Close]

BLAST of Lsi07G004940 vs. TAIR 10
Match: AT1G52830.1 (indole-3-acetic acid 6 )

HSP 1 Score: 167.9 bits (424), Expect = 7.5e-42
Identity = 94/190 (49.47%), Postives = 119/190 (62.63%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTP--SSKNEKKRVFS------------ESSTTNDGG 60
           MA  G+ LEITELRLGLPG   S      S  +KKRV S            E+S  +   
Sbjct: 1   MAKEGLALEITELRLGLPGDNYSEISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSVE 60

Query: 61  DQRRFPKRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSY 120
           D+     ++Q VGWPPVCS+RR+ +      +E  +    YVK+SMDG PY+RK+DLGS 
Sbjct: 61  DESLPVVKSQAVGWPPVCSYRRKKN------NEEASKAIGYVKVSMDGVPYMRKIDLGSS 120

Query: 121 KEYSNLVVAMENLFGS-AIGCS------DFVLIYEDRDGDWMLVGDVPWKMFVESCKRLR 170
             Y NLV  +ENLFG   IG +      ++++IYED+D DWMLVGDVPW+MF ESCKRLR
Sbjct: 121 NSYINLVTVLENLFGCLGIGVAKEGKKCEYIIIYEDKDRDWMLVGDVPWQMFKESCKRLR 180

[Close]

BLAST of Lsi07G004940 vs. TAIR 10
Match: AT3G15540.1 (indole-3-acetic acid inducible 19 )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 94/195 (48.21%), Postives = 119/195 (61.03%), Query Frame = 0


Query: 1   MASNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFS--------------ESSTTNDGG 60
           M   G+ LEITELRLGLPG       + K  KKR F+              ES   + GG
Sbjct: 1   MEKEGLGLEITELRLGLPG----RDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGG 60

Query: 61  DQRRF----PKRNQVVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVD 120
           D  +       ++QVVGWPPVCS+R+++S  +   + T      YVK+SMDG PYLRK+D
Sbjct: 61  DAEKVNDSPAAKSQVVGWPPVCSYRKKNSCKE---ASTTKVGLGYVKVSMDGVPYLRKMD 120

Query: 121 LGSYKEYSNLVVAMENLFG-SAIGCS-------DFVLIYEDRDGDWMLVGDVPWKMFVES 170
           LGS + Y +L  A++ LFG   IG +       ++V IYED+DGDWML GDVPW MF+ES
Sbjct: 121 LGSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFLES 180

[Close]

BLAST of Lsi07G004940 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 161.4 bits (407), Expect = 7.1e-40
Identity = 89/175 (50.86%), Postives = 111/175 (63.43%), Query Frame = 0


Query: 6   VELEITELRLGLPGSGCSHTPSSKNEKKRVF---SESSTTNDGGDQRRFPKRNQVVGWPP 65
           V L+ TELRLGLPG+    T S     KRV    +E    + G  +   P + Q+VGWPP
Sbjct: 11  VNLKATELRLGLPGT--EETVSCGKSNKRVLPEATEKEIESTGKTETASPPKAQIVGWPP 70

Query: 66  VCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMENLFGS 125
           V S+R+ +    K  SE +     YVK+SMDGAPYLRK+DL  YK+Y  L+ ++EN+F  
Sbjct: 71  VRSYRKNNVQTKKSESEGQGN---YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKF 130

Query: 126 AIG---------CSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKG 169
           ++G          SDFV  YED+DGDWMLVGDVPW+MFV SCKRLRIMK SE KG
Sbjct: 131 SVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKG 180

[Close]

BLAST of Lsi07G004940 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-38
Identity = 88/181 (48.62%), Postives = 113/181 (62.43%), Query Frame = 0


Query: 6   VELEITELRLGLPGS-----GCSHTPSSKNEKKRVFSESSTTNDGGDQRRF----PKRNQ 65
           V L+ TELRLGLPG+              N  KRV S  +        R+     P++ Q
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64

Query: 66  VVGWPPVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAM 125
           +VGWPPV S+R+ +  + K+ SE E    +YVK+SMDGAPYLRK+DL  YK YS L+ A+
Sbjct: 65  IVGWPPVRSYRKNNIQSKKNESEHE-GQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKAL 124

Query: 126 ENLFGSAIG---------CSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAK 169
           E +F  ++G          SDFV  YED+DGDWML+GDVPW+MF+ +CKRLRIMK SEAK
Sbjct: 125 EVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKGSEAK 184

[Close]

BLAST of Lsi07G004940 vs. TAIR 10
Match: AT1G15580.1 (indole-3-acetic acid inducible 5 )

HSP 1 Score: 148.7 bits (374), Expect = 4.7e-36
Identity = 89/173 (51.45%), Postives = 110/173 (63.58%), Query Frame = 0


Query: 3   SNGVELEITELRLGLPGSGCSHTPSSKNEKKRVFSESSTTNDGGDQRRFP-KRNQVVGWP 62
           SN + LEITELRLGLPG     +  S + KKR   E        D +  P K++QVVGWP
Sbjct: 5   SNNLGLEITELRLGLPGD-IVVSGESISGKKRASPEVEI-----DLKCEPAKKSQVVGWP 64

Query: 63  PVCSHRRRSSGNDKDLSETETTPKMYVKISMDGAPYLRKVDLGSYKEYSNLVVAMENLFG 122
           PVCS+RR++S         E T   YVK+S+DGA +LRK+DL  YK Y +L  A++ LFG
Sbjct: 65  PVCSYRRKNS--------LERTKSSYVKVSVDGAAFLRKIDLEMYKCYQDLASALQILFG 124

Query: 123 SAIGC------SDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKG 169
             I        S+ V IYED+DGDWML GDVPW+MF+ SCKRLRIMKRS  +G
Sbjct: 125 CYINFDDTLKESECVPIYEDKDGDWMLAGDVPWEMFLGSCKRLRIMKRSCNRG 163

The following BLAST results are available for this feature:

BLAST of Lsi07G004940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P13088	7.6e-47	54.55	Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1	[more]
P32293	4.9e-46	53.51	Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 S...	[more]
O24541	1.6e-44	52.75	Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 S...	[more]
Q38824	1.1e-40	49.47	Auxin-responsive protein IAA6 OS=Arabidopsis thaliana OX=3702 GN=IAA6 PE=1 SV=2	[more]
O24409	1.5e-39	48.21	Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=...	[more]

BLAST of Lsi07G004940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DAE6	1.9e-85	87.17	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BI60	1.9e-85	87.17	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489925 PE=3 SV=1	[more]
A0A0A0L852	8.1e-84	86.63	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G516540 PE=3 SV=1	[more]
A0A6J1GBF5	6.2e-68	74.23	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111452638 PE=3 SV=1	[more]
A0A6J1KBS9	1.1e-67	73.71	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111492883 PE=3 SV=1	[more]

BLAST of Lsi07G004940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875964.1	1.0e-85	90.91	auxin-induced protein 22C-like [Benincasa hispida]	[more]
XP_008447488.1	4.0e-85	87.17	PREDICTED: auxin-induced protein 22A-like [Cucumis melo] >KAA0050763.1 auxin-ind...	[more]
XP_004149851.2	1.7e-83	86.63	auxin-induced protein 22A [Cucumis sativus]	[more]
KAE8650746.1	1.7e-83	86.63	hypothetical protein Csa_017652 [Cucumis sativus]	[more]
XP_023525671.1	6.8e-69	74.74	auxin-induced protein 22A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi07G004940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52830.1	7.5e-42	49.47	indole-3-acetic acid 6	[more]
AT3G15540.1	1.1e-40	48.21	indole-3-acetic acid inducible 19	[more]
AT5G43700.1	7.1e-40	50.86	AUX/IAA transcriptional regulator family protein	[more]
AT1G04240.1	2.3e-38	48.62	AUX/IAA transcriptional regulator family protein	[more]
AT1G15580.1	4.7e-36	51.45	indole-3-acetic acid inducible 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 80..176 e-value: 3.9E-36 score: 125.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..82
None	No IPR available	PANTHER	PTHR31734:SF87	AUXIN-RESPONSIVE PROTEIN IAA6	coord: 4..169
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 78..162
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 126..168 e-value: 8.4E-25 score: 88.0 coord: 38..122 e-value: 1.0E-21 score: 77.9
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 4..169
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 85..176 score: 23.827654

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G004940.1	Lsi07G004940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding