Lsi07G004720 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G004720
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr07: 4981060 .. 4985745 (+)
RNA-Seq Expression	Lsi07G004720
Synteny	Lsi07G004720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCATCAAGTTGCACAACAGTCTTCCAAGTATGTATGCTTGCAATTCCTTGCTTAATTTGCTCGTTAAACACCGTAGGCTTGAAACTGCACACCAACTGTATGATGAAATGGTTGATAGAGATAATGGTGATGACATTTGTATGAATAATTATACTACTTGTATTATGGTGAGAGGCTTATGTTTGGAAGGTAGAATCGAGGATGGTAGGAAGCTGATTGAATCCAGATGGGGGAAAGGCTGTGTACCCAACATTGTGTTTTACAATACACTCATTGATGGATATTGCAAGAAAGGTGAGGTTATAAGTGCGTACGAACTTTTTAAGGAATTGAAGATGAAAGGATTTATACCTACTATAGAAACTTTTGGTTCCATGGTAAATGGTTTTTGCAAGGTGGGAATCTTTGAAGCTATTGATCTTCTTTTGACGGAAATGAAAGATAGGGGCTTGAGTGTTAATGTTCAAATTTATAATAACATTATTGACGCTCAATATAAGCTCGGTTACGATATTAAAGCAAAGGATACACTTAAAGAAATGACTGAGAATTGCTGTCAACCAGATCTTGTGACTTATAATACTCTAATAAACTATTTATGCAGCAGGGGGGAGGTCACGGAAGCTGAGAAGCTCTTGGAACAAACAATAAAGAGCGGATTGGCACCGGATAAGTTCACTTATACTCCTCTTGTTCATGGCTACTGTAAACAAGGGGAATATATTAGGGCCTCAGATTTGCTCATTGAGATGTCAACAAGAGGGCATGAAGTGGATATGGTTTCGTATGGAGCTTTAATCCATGGACTTATTGTTGCAGGGGAAGTCGATATTGCATTGACAATCTGGGACAGAATGATGGAACGAGGAGTCTTCCCTGATGCCAATATCTACAATGTTTTGATGAATGGACTTTTCAAGAAAGGGAAACTTTCCATGGCCAAGGTGATGCTTACTGAGATGCTTGACCAAAATATAGCACCTGATGCATTTATTTATGCTACTTTAGTGGATGGGTTCATTAGGCATGGCAACCTTGATGAGGCCAAGAAACTCTTTCAGCTCACTATTGAAAAGGGTATAGACCCCGGTGTTGTGGGATATAATGTCATGATCAAAGGTTTCTCTAAATTTGGGATGATGGACGATGCAATTTTATGCATTGATAGAATGAGGAGTGCACACCATGTTCCTGACGTATTTACTTTCTCCACCATAATTGATGGATACGTAAAACAACACGACATGTATGCTGTGCTGAAGATCTTTGGACTGATGGTGAAGCAGAGCTGCAAGCCTAATGTTGTCACTTACACATCTTTGATCAATGGATATTGCCAAAAGGGAGAAATTAAGATGGCTGAAAAACTTTTTAGCATGATGCAATCTCATGGGTTGGAGCCTAGTGTCGTCACATACAGTATACTTATACGAAGCTTTTGCAAAGAAGCTAAGCTGGGAAAGGCTGCATCATATTTCGAGCTAATGTTGATTAACAAATGCACTCCTAATGATGTTGTATTTCATTATCTAGTAAATGGGTTTATAAATACAAATACTGCTGCAGTTTCAAGAGGACCAAATAATCTTCATGAGAATTCTAGATCGATATTTGAGGACTTCTTTTTGAGAATGATCGGTGATGGATGGACTCGAAAGGCTGCAGCTTACAATTGTATTCTCATTTGTCTTTGTCAGCACAGAATGGTTAAAACTGCCTTACAATTGCACGATAAGATGCTGGCTTTGGGACTTTGTCCTGATGCTGTTTCTTTTGTTGCATTGATACATGGCATTTGCTTGGAAGGAAACTCAAAAGAATGGAGGAACATTATTTCTTGTGATTTGAATGAAGGAGAACTTCAAATTGCCTTGAAATACTCACTTGAACTTGATAAGTCCATAACTCAGGGAGGTATTTCTGAGGCTTCAGGCATTTTGCAGGCTATGGTTAAGGGTTACGAGTCTCCTAATCAAGATTGAACAACTTGAAGGAGCCACAAAGATAGAGAATGGTGAGGAACTGAGATGGTTCAATCTAGACAACTGAGAGAAATTTGAACTACTTCGTGCTAGCCCTATCTGTGAGTTGGGTTTCAGCAGTGATGTAGCTCAGATAGTTAGATGGCAGCAGTAACAGCCCATTTTCACATCCTGGCTTATAGGTATTGGCAACATAAAAGCCGAGAGCCTAGCATGACTTTCTAAGAGGATACAAGTCCAAGCATTTCTGGGTTCTACATTGTTTAGACGTAAACTTTTCTAAAGTCGGGCTTATTTTGGTGGGTCATATCAGTTGCAAGACTGTTTCTAATGTCTGGAACTTAGATTACAAGGACTTAATTTTCATGTTCAGAGGATTTTTGAGTGAATGGAAGATATCTGATTGACTCTCTTGACTACTTTGCTGGGAGGTTGCTATCTGATCAAAATCCAGATTATAGAGTTTGGGAAGCTGGAAACATAGGAGAATTTTTGTGTAAACTGTTTTTCAATTACCCTTCTGGATTATGGAACGTTCTTGGTAAAAGGCATGGAGAAACTAAAAAACACATATTTATTCATTGTATTTTGAAAGGAGTTTGGTGTAGAGTTCTGGATCTCTCCATACTCTCTTGGTGTTACCCCAGAAAGAGTAAAAAATTTCGTCTACTGGCCGAGCACTGTTTATATAAACGGCTAGTATATTAGCACAAAATTGTAGCAAGTCGAGAACACATAAACTTGCTCTGTCCTTACGAGAAACTGAATCGTAAATAAATTACAAGAAGGCTGTATTTGGAAGACTGATGCAACTTCATCTTTTGTATAGAAGATGCCTCTGGCTGACACTCTATTCTTCAGTCACTTTCAAAGTCTGTCTCTTCATTTTTGGACTTGCGGTGAACCTCATGACATTTGCCACCACTCATCACGTTTGCCAGCTCTTGTATGGAGCAAGAAGTGCTTCGTCTCATCTTGTCACCAAGTATCTCAATGTGATCCTTGAAGCCTATCCCCAGAAGTCGGTTCCTCAACAACTCAACAGTAGAAATATATGGAGGTATTCCCTCATCAATCATCATCTCAAAGTACTTGCATGCTTCTTCTAACTTCCATTTTTTCTTGCAGAAACCATGAATCATGACAGCATAAGTTGAAACAGAAGGGTAAAATTCTCTCTCTCCCATACTCTCCCAGACTTCATTGGCTCTGTCAAATCTTCCCACCCTTACTAGCAATTTCAAAACCATATTGTAGGTATGTCTATCAGGAACACAATTGTCTCTATCCATTCTCTTGATCAAGTTAAGAGCACTATTAACCTCGCTGTGCTCACAATGATAAGCTTGGATTGCATTATAGGACCATGTATCTGGAGTAACTCCTCTCTCAATCATTTCATCCAAAAGTTGGTAGGCTTCTTCTACCTTTTTATCTTTACAAAGCTTCTTGATAACACAGTTATAAGTAAACACATTAGGGAAAAGGTTGTGTCTCTTCATTCTTTCTAGGACCCGATAAACCGTATGCAAATCATTCTCTTGACAACTTGAGCGGATGAAAATCGAATACGTACCGGCATCTGGGTCGACGCCATTCGAACCCATCTCCTGAAACATCTTGTACGCTTCATCCCTTTTCCCAGCTTTGCACAGAGCTTCCAAGAGACTATTGTAAGCAAGCACATCAATCAAACAACCTCGTTCCTGCATTTCATCAAACACCTTCTGGGCATTGTTTGAGTCACCCACATCGCCCCAACCCCTCGTCAAAATGCTGTAAGTTTTCACACTCGGATTAAACCCACTCTTAACTTTATCAAAAAACTGCTGGGCATGAGCCACATGTTTCCTCTTGCATAGAATATACAAGAGCTGATCAAGATCATCAACACCAGGCCTCATCCCGAACTCCCCCATTCGATTGAAGGCCCGAATAGCATCTTGAGGCAAGTCAGTCCTGCTATAAGCTCTGAATACAAGCCAGAAAAGTTCATGTGTGATCACAGAGCACCGAGTCTCCCTTATTTCTATAAGAAAATCCCACAAGATAGCGAATTGCCCACTGCTTCCCAAGATGTCAACGAGAATGCGATAGCTGTCGGCGCTGGGTTCAAAACCCGGAATTCTTTTAGCCCAGAGGAAGAACCTATGAGCGGAGAATCCGATATTCTTGCACCTTTTGAGAACCTGCTCGACGAGGTCAGTGGATACATTGGAGGAGAAGGAAGAGAGGCCGAGGTCCAAGTCATGGTGAGGGCTTCTGTGATCGCTGAGGATGCGAGATATCTCACTGACGAGGAATGGAAGCAGTGAGTCTGATCCTGCTTGTGCTGCTGTAGCGAGAGAAGTGAATGGGCGTTGGTGAGGGAAAGGATTGGTTTTTAAGAGAGAGCAGAAGAGTGAAATGGAGATTTGGAATTTGGGGGAGAAGGCTCTAATGGCCATTACAGAGCAAGGTTGCAGAGGACTGTCGTCAGCATTCTTTCTTGAAAATTGGAATTTGGAGGAGAAGGCTCTTCGAGTTCGAATGGATCGAAGAGAGAGCATGCTCTACGCGTCTCACAGGAGTGGCTCAAGGGATCCCAGAGCCCTTTTTATTTGAAGATGATAAGTGTAAAATTTAACGAAATTGTAATTCATAAGAACTAAAATATGGATTAAATTGAAGATATCAAACTAAAAGATTGAAATTTTAA

mRNA sequence

ATGGCCAGGGGGGAGGTCACGGAAGCTGAGAAGCTCTTGGAACAAACAATAAAGAGCGGATTGGCACCGGATAAGTTCACTTATACTCCTCTTGTTCATGGCTACTGTAAACAAGGGGAATATATTAGGGCCTCAGATTTGCTCATTGAGATGTCAACAAGAGGGCATGAAGTGGATATGGTTTCGTATGGAGCTTTAATCCATGGACTTATTGTTGCAGGGGAAGTCGATATTGCATTGACAATCTGGGACAGAATGATGGAACGAGGAGTCTTCCCTGATGCCAATATCTACAATGTTTTGATGAATGGACTTTTCAAGAAAGGGAAACTTTCCATGGCCAAGGTGATGCTTACTGAGATGCTTGACCAAAATATAGCACCTGATGCATTTATTTATGCTACTTTAGTGGATGGGTTCATTAGGCATGGCAACCTTGATGAGGCCAAGAAACTCTTTCAGCTCACTATTGAAAAGGGTATAGACCCCGGTGTTGTGGGATATAATGTCATGATCAAAGGTTTCTCTAAATTTGGGATGATGGACGATGCAATTTTATGCATTGATAGAATGAGGAGTGCACACCATGTTCCTGACAATATACAAGAGCTGATCAAGATCATCAACACCAGGCCTCATCCCGAACTCCCCCATTCGATTGAAGGCCCGAATAGCATCTTGAGGCAAGTCAGTCCTGCTATAAGCTCTGAATACAAGCCAGAAAAGTTCATGTGTGATCACAGAGCACCGAGTCTCCCTTATTTCTATAAGAAAATCCCACAAGATAGCGAATTGCCCACTGCTTCCCAAGATGTCAACGAGAATGCGATAGCTGTCGGCGCTGGGTTCAAAACCCGGAATTCTTTTAGCCCAGAGGAAGAACCTATGAGCGGAGAATCCGATATTCTTGCACCTTTTGAGAACCTGCTCGACGAGGTCAGTGGATACATTGGAGGAGAAGGAAGAGAGGCCGAGGTCCAAGTCATGGTGAGGGCTTCTGTGATCGCTGAGGATGCGAGATATCTCACTGACGAGGAATGGAAGCAGTGAGTCTGATCCTGCTTGTGCTGCTGTAGCGAGAGAAGTGAATGGGCGTTGGTGAGGGAAAGGATTGGTTTTTAAGAGAGAGCAGAAGAGTGAAATGGAGATTTGGAATTTGGGGGAGAAGGCTCTAATGGCCATTACAGAGCAAGGTTGCAGAGGACTGTCGTCAGCATTCTTTCTTGAAAATTGGAATTTGGAGGAGAAGGCTCTTCGAGTTCGAATGGATCGAAGAGAGAGCATGCTCTACGCGTCTCACAGGAGTGGCTCAAGGGATCCCAGAGCCCTTTTTATTTGAAGATGATAAGTGTAAAATTTAACGAAATTGTAATTCATAAGAACTAAAATATGGATTAAATTGAAGATATCAAACTAAAAGATTGAAATTTTAA

Coding sequence (CDS)

ATGGCCAGGGGGGAGGTCACGGAAGCTGAGAAGCTCTTGGAACAAACAATAAAGAGCGGATTGGCACCGGATAAGTTCACTTATACTCCTCTTGTTCATGGCTACTGTAAACAAGGGGAATATATTAGGGCCTCAGATTTGCTCATTGAGATGTCAACAAGAGGGCATGAAGTGGATATGGTTTCGTATGGAGCTTTAATCCATGGACTTATTGTTGCAGGGGAAGTCGATATTGCATTGACAATCTGGGACAGAATGATGGAACGAGGAGTCTTCCCTGATGCCAATATCTACAATGTTTTGATGAATGGACTTTTCAAGAAAGGGAAACTTTCCATGGCCAAGGTGATGCTTACTGAGATGCTTGACCAAAATATAGCACCTGATGCATTTATTTATGCTACTTTAGTGGATGGGTTCATTAGGCATGGCAACCTTGATGAGGCCAAGAAACTCTTTCAGCTCACTATTGAAAAGGGTATAGACCCCGGTGTTGTGGGATATAATGTCATGATCAAAGGTTTCTCTAAATTTGGGATGATGGACGATGCAATTTTATGCATTGATAGAATGAGGAGTGCACACCATGTTCCTGACAATATACAAGAGCTGATCAAGATCATCAACACCAGGCCTCATCCCGAACTCCCCCATTCGATTGAAGGCCCGAATAGCATCTTGAGGCAAGTCAGTCCTGCTATAAGCTCTGAATACAAGCCAGAAAAGTTCATGTGTGATCACAGAGCACCGAGTCTCCCTTATTTCTATAAGAAAATCCCACAAGATAGCGAATTGCCCACTGCTTCCCAAGATGTCAACGAGAATGCGATAGCTGTCGGCGCTGGGTTCAAAACCCGGAATTCTTTTAGCCCAGAGGAAGAACCTATGAGCGGAGAATCCGATATTCTTGCACCTTTTGAGAACCTGCTCGACGAGGTCAGTGGATACATTGGAGGAGAAGGAAGAGAGGCCGAGGTCCAAGTCATGGTGAGGGCTTCTGTGATCGCTGAGGATGCGAGATATCTCACTGACGAGGAATGGAAGCAGTGA

Protein sequence

MARGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSYGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDDAILCIDRMRSAHHVPDNIQELIKIINTRPHPELPHSIEGPNSILRQVSPAISSEYKPEKFMCDHRAPSLPYFYKKIPQDSELPTASQDVNENAIAVGAGFKTRNSFSPEEEPMSGESDILAPFENLLDEVSGYIGGEGREAEVQVMVRASVIAEDARYLTDEEWKQ

Homology

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BLAST of Lsi07G004720 vs. ExPASy Swiss-Prot
Match: Q9SSR4 (Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana OX=3702 GN=At1g52620 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.4e-54
Identity = 99/196 (50.51%), Postives = 143/196 (72.96%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           G+   A   L++  K GL P+  +Y PL+  YCK  EY  AS LL++M+ RG + D+V+Y
Sbjct: 359 GKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTY 418

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
           G LIHGL+V+G +D A+ +  ++++RGV PDA IYN+LM+GL K G+   AK++ +EMLD
Sbjct: 419 GILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLD 478

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
           +NI PDA++YATL+DGFIR G+ DEA+K+F L++EKG+   VV +N MIKGF + GM+D+
Sbjct: 479 RNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDE 538

Query: 184 AILCIDRMRSAHHVPD 200
           A+ C++RM   H VPD
Sbjct: 539 ALACMNRMNEEHLVPD 554

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BLAST of Lsi07G004720 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.9e-29
Identity = 71/205 (34.63%), Postives = 109/205 (53.17%), Query Frame = 0


Query: 3   RGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVS 62
           +G V+EA  L+++ ++ G  PD+ TY P+++  CK G    A DL  +M  R  +  +V 
Sbjct: 188 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247

Query: 63  YGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEML 122
           Y  +I  L   G  D AL++++ M  +G+  D   Y+ L+ GL   GK      ML EM+
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 123 DQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMD 182
            +NI PD   ++ L+D F++ G L EAK+L+   I +GI P  + YN +I GF K   + 
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 367

Query: 183 DAILCIDRMRSAHHVPDNIQELIKI 208
           +A    D M S    PD +   I I
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILI 392

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BLAST of Lsi07G004720 vs. ExPASy Swiss-Prot
Match: Q9LSL9 (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX=3702 GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.9e-29
Identity = 70/205 (34.15%), Postives = 112/205 (54.63%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           G V EA + + + +++GL PD FTYT L+ GYC++ +   A  +  EM  +G   + V+Y
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
             LIHGL VA  +D A+ ++ +M +   FP    Y VL+  L    + S A  ++ EM +
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEE 351

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
             I P+   Y  L+D        ++A++L    +EKG+ P V+ YN +I G+ K GM++D
Sbjct: 352 TGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIED 411

Query: 184 AILCIDRMRSAHHVPD--NIQELIK 207
           A+  ++ M S    P+     ELIK
Sbjct: 412 AVDVVELMESRKLSPNTRTYNELIK 436

[Close]

BLAST of Lsi07G004720 vs. ExPASy Swiss-Prot
Match: Q9LPX2 (Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12775 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.9e-28
Identity = 62/196 (31.63%), Postives = 111/196 (56.63%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           G+V++A  L+++ +++G  P++ TY P+++  CK G+   A +LL +M  R  ++D V Y
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
             +I GL   G +D A  +++ M  +G   D   YN L+ G    G+      +L +M+ 
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
           + I+P+   ++ L+D F++ G L EA +L +  +++GI P  + YN +I GF K   +++
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386

Query: 184 AILCIDRMRSAHHVPD 200
           AI  +D M S    PD
Sbjct: 387 AIQMVDLMISKGCDPD 402

[Close]

BLAST of Lsi07G004720 vs. ExPASy Swiss-Prot
Match: Q9SH60 (Pentatricopeptide repeat-containing protein At1g64100 OS=Arabidopsis thaliana OX=3702 GN=At1g64100 PE=2 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 6.6e-28
Identity = 63/194 (32.47%), Postives = 110/194 (56.70%), Query Frame = 0


Query: 8   EAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSYGALI 67
           EA  L +Q ++ GL P   T+  L++G C +G  + A+ L+ +M  +G  +D+V+YG ++
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 268

Query: 68  HGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIA 127
           +G+   G+   AL +  +M E  + PD  IY+ +++ L K G  S A+ + +EML++ IA
Sbjct: 269 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIA 328

Query: 128 PDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDDAILC 187
           P+ F Y  ++DGF   G   +A++L +  IE+ I+P V+ +N +I    K G + +A   
Sbjct: 329 PNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 388

Query: 188 IDRMRSAHHVPDNI 202
            D M      PD +
Sbjct: 389 CDEMLHRCIFPDTV 402

[Close]

BLAST of Lsi07G004720 vs. ExPASy TrEMBL
Match: A0A5A7TLP1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001660 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 3.8e-95
Identity = 173/198 (87.37%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 2   ARGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMV 61
           +RGEV EAEKLLEQTI+ GLAP++FTYTPLVHGYCK+GEY RA+DLLIEMSTRG E+DM+
Sbjct: 360 SRGEVKEAEKLLEQTIRRGLAPNEFTYTPLVHGYCKRGEYTRATDLLIEMSTRGLEIDMI 419

Query: 62  SYGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEM 121
           SYGALIHGL+VAGEVDIALTI DRMM +G+ PDANIYNVLMNGLFKKGKLSMAKV+L+EM
Sbjct: 420 SYGALIHGLVVAGEVDIALTIRDRMMNQGILPDANIYNVLMNGLFKKGKLSMAKVVLSEM 479

Query: 122 LDQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMM 181
           LDQNIAPDAF+YATLVDGFIR GNLDEAKKLFQL IEKG+DPGVVGYNVMIKGFSKFGMM
Sbjct: 480 LDQNIAPDAFVYATLVDGFIRLGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKFGMM 539

Query: 182 DDAILCIDRMRSAHHVPD 200
           D+AILCIDRMRSAHHVPD
Sbjct: 540 DNAILCIDRMRSAHHVPD 557

[Close]

BLAST of Lsi07G004720 vs. ExPASy TrEMBL
Match: A0A1S3BYA4 (pentatricopeptide repeat-containing protein At1g52620 OS=Cucumis melo OX=3656 GN=LOC103494710 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 3.8e-95
Identity = 173/198 (87.37%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 2   ARGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMV 61
           +RGEV EAEKLLEQTI+ GLAP++FTYTPLVHGYCK+GEY RA+DLLIEMSTRG E+DM+
Sbjct: 360 SRGEVKEAEKLLEQTIRRGLAPNEFTYTPLVHGYCKRGEYTRATDLLIEMSTRGLEIDMI 419

Query: 62  SYGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEM 121
           SYGALIHGL+VAGEVDIALTI DRMM +G+ PDANIYNVLMNGLFKKGKLSMAKV+L+EM
Sbjct: 420 SYGALIHGLVVAGEVDIALTIRDRMMNQGILPDANIYNVLMNGLFKKGKLSMAKVVLSEM 479

Query: 122 LDQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMM 181
           LDQNIAPDAF+YATLVDGFIR GNLDEAKKLFQL IEKG+DPGVVGYNVMIKGFSKFGMM
Sbjct: 480 LDQNIAPDAFVYATLVDGFIRLGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKFGMM 539

Query: 182 DDAILCIDRMRSAHHVPD 200
           D+AILCIDRMRSAHHVPD
Sbjct: 540 DNAILCIDRMRSAHHVPD 557

[Close]

BLAST of Lsi07G004720 vs. ExPASy TrEMBL
Match: A0A0A0KTD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004900 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 4.2e-94
Identity = 172/198 (86.87%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 2   ARGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMV 61
           +RGEV EAEKLLEQTI+ GLAP+K TYTPLVHGYCKQGEY +A+D LIEMST G EVDM+
Sbjct: 360 SRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMI 419

Query: 62  SYGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEM 121
           SYGALIHGL+VAGEVD ALTI DRMM RG+ PDANIYNVLMNGLFKKGKLSMAKVMLTEM
Sbjct: 420 SYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEM 479

Query: 122 LDQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMM 181
           LDQNIAPDAF+YATLVDGFIRHGNLDEAKKLFQL IEKG+DPGVVGYNVMIKGFSK GMM
Sbjct: 480 LDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMM 539

Query: 182 DDAILCIDRMRSAHHVPD 200
           D+AILCID+MR AHHVPD
Sbjct: 540 DNAILCIDKMRRAHHVPD 557

[Close]

BLAST of Lsi07G004720 vs. ExPASy TrEMBL
Match: A0A6J1DHT9 (pentatricopeptide repeat-containing protein At1g52620 OS=Momordica charantia OX=3673 GN=LOC111021040 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 2.8e-93
Identity = 171/196 (87.24%), Postives = 181/196 (92.35%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           GEV EAEK+LEQ IK G+ P+KFTYTPLVH YCKQGEY RASDLLIEMS +GH+VDMVSY
Sbjct: 362 GEVMEAEKILEQAIKRGMVPNKFTYTPLVHAYCKQGEYYRASDLLIEMSKKGHKVDMVSY 421

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
           GALIHGL+VAGEVD A+TI DRMMERGV PDANIYNVLMNGLFKKG LSMAKVML+EMLD
Sbjct: 422 GALIHGLVVAGEVDNAMTIRDRMMERGVLPDANIYNVLMNGLFKKGNLSMAKVMLSEMLD 481

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
           QNIAPDAFIYATLVDGFIRH NLDEAKKLFQLTIEKGIDPGVVGYN MIKGF KFGMM+D
Sbjct: 482 QNIAPDAFIYATLVDGFIRHDNLDEAKKLFQLTIEKGIDPGVVGYNSMIKGFCKFGMMED 541

Query: 184 AILCIDRMRSAHHVPD 200
           A+LCIDRMRSA HVPD
Sbjct: 542 AVLCIDRMRSARHVPD 557

[Close]

BLAST of Lsi07G004720 vs. ExPASy TrEMBL
Match: B9RV43 (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0898890 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 7.3e-78
Identity = 143/196 (72.96%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           GEV +AE+LLEQ IK GL P+K +YTPL+H YCKQGEY+RA DLLI+MS RGH+ D+V+Y
Sbjct: 326 GEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTY 385

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
            ALIHGLIVAGEVD+ALT+ ++M+E+GV PDANIYNVLM+GL KKG+L  AKV+L EMLD
Sbjct: 386 AALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLD 445

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
           QN+APDAFI ATLVDGFIRHG+ +EAKKLF+LTIEKGIDPGVVGYN MIKG+ KFGMM D
Sbjct: 446 QNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKD 505

Query: 184 AILCIDRMRSAHHVPD 200
           A+LC  RM    H PD
Sbjct: 506 ALLCFKRMIQGLHSPD 521

[Close]

BLAST of Lsi07G004720 vs. NCBI nr
Match: XP_038894903.1 (pentatricopeptide repeat-containing protein At1g52620 [Benincasa hispida])

HSP 1 Score: 367.9 bits (943), Expect = 1.0e-97
Identity = 180/198 (90.91%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 2   ARGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMV 61
           +RGEV EAEKLLEQTI+ GLAPDKF YTPLVHGY KQGEYIRASDL+IEMSTRGHEVD V
Sbjct: 360 SRGEVKEAEKLLEQTIRRGLAPDKFAYTPLVHGYYKQGEYIRASDLVIEMSTRGHEVDRV 419

Query: 62  SYGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEM 121
           SYGA+IHGL+VAGEVDIALTI DRMMERGV PDANIYNVLMNGLFKKGKLSMAK+MLTEM
Sbjct: 420 SYGAIIHGLVVAGEVDIALTIRDRMMERGVLPDANIYNVLMNGLFKKGKLSMAKMMLTEM 479

Query: 122 LDQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMM 181
           LDQ+IAPDAFIYATLVDGFIRHGNLDEA K+FQLTIEKGIDPGVVGYNVMIKGFSKFGMM
Sbjct: 480 LDQHIAPDAFIYATLVDGFIRHGNLDEAMKIFQLTIEKGIDPGVVGYNVMIKGFSKFGMM 539

Query: 182 DDAILCIDRMRSAHHVPD 200
           +DAILCIDRMRSAHH PD
Sbjct: 540 NDAILCIDRMRSAHHAPD 557

[Close]

BLAST of Lsi07G004720 vs. NCBI nr
Match: XP_008454246.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Cucumis melo] >KAA0044433.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK29560.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 358.2 bits (918), Expect = 7.9e-95
Identity = 173/198 (87.37%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 2   ARGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMV 61
           +RGEV EAEKLLEQTI+ GLAP++FTYTPLVHGYCK+GEY RA+DLLIEMSTRG E+DM+
Sbjct: 360 SRGEVKEAEKLLEQTIRRGLAPNEFTYTPLVHGYCKRGEYTRATDLLIEMSTRGLEIDMI 419

Query: 62  SYGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEM 121
           SYGALIHGL+VAGEVDIALTI DRMM +G+ PDANIYNVLMNGLFKKGKLSMAKV+L+EM
Sbjct: 420 SYGALIHGLVVAGEVDIALTIRDRMMNQGILPDANIYNVLMNGLFKKGKLSMAKVVLSEM 479

Query: 122 LDQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMM 181
           LDQNIAPDAF+YATLVDGFIR GNLDEAKKLFQL IEKG+DPGVVGYNVMIKGFSKFGMM
Sbjct: 480 LDQNIAPDAFVYATLVDGFIRLGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKFGMM 539

Query: 182 DDAILCIDRMRSAHHVPD 200
           D+AILCIDRMRSAHHVPD
Sbjct: 540 DNAILCIDRMRSAHHVPD 557

[Close]

BLAST of Lsi07G004720 vs. NCBI nr
Match: XP_004152354.1 (pentatricopeptide repeat-containing protein At1g52620 [Cucumis sativus] >KGN52880.1 hypothetical protein Csa_015200 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 8.8e-94
Identity = 172/198 (86.87%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 2   ARGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMV 61
           +RGEV EAEKLLEQTI+ GLAP+K TYTPLVHGYCKQGEY +A+D LIEMST G EVDM+
Sbjct: 360 SRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMI 419

Query: 62  SYGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEM 121
           SYGALIHGL+VAGEVD ALTI DRMM RG+ PDANIYNVLMNGLFKKGKLSMAKVMLTEM
Sbjct: 420 SYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEM 479

Query: 122 LDQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMM 181
           LDQNIAPDAF+YATLVDGFIRHGNLDEAKKLFQL IEKG+DPGVVGYNVMIKGFSK GMM
Sbjct: 480 LDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMM 539

Query: 182 DDAILCIDRMRSAHHVPD 200
           D+AILCID+MR AHHVPD
Sbjct: 540 DNAILCIDKMRRAHHVPD 557

[Close]

BLAST of Lsi07G004720 vs. NCBI nr
Match: XP_022153568.1 (pentatricopeptide repeat-containing protein At1g52620 [Momordica charantia])

HSP 1 Score: 352.1 bits (902), Expect = 5.7e-93
Identity = 171/196 (87.24%), Postives = 181/196 (92.35%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           GEV EAEK+LEQ IK G+ P+KFTYTPLVH YCKQGEY RASDLLIEMS +GH+VDMVSY
Sbjct: 362 GEVMEAEKILEQAIKRGMVPNKFTYTPLVHAYCKQGEYYRASDLLIEMSKKGHKVDMVSY 421

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
           GALIHGL+VAGEVD A+TI DRMMERGV PDANIYNVLMNGLFKKG LSMAKVML+EMLD
Sbjct: 422 GALIHGLVVAGEVDNAMTIRDRMMERGVLPDANIYNVLMNGLFKKGNLSMAKVMLSEMLD 481

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
           QNIAPDAFIYATLVDGFIRH NLDEAKKLFQLTIEKGIDPGVVGYN MIKGF KFGMM+D
Sbjct: 482 QNIAPDAFIYATLVDGFIRHDNLDEAKKLFQLTIEKGIDPGVVGYNSMIKGFCKFGMMED 541

Query: 184 AILCIDRMRSAHHVPD 200
           A+LCIDRMRSA HVPD
Sbjct: 542 AVLCIDRMRSARHVPD 557

[Close]

BLAST of Lsi07G004720 vs. NCBI nr
Match: XP_002517612.2 (pentatricopeptide repeat-containing protein At1g52620 [Ricinus communis])

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-77
Identity = 143/196 (72.96%), Postives = 168/196 (85.71%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           GEV +AE+LLEQ IK GL P+K +YTPL+H YCKQGEY+RA DLLI+MS RGH+ D+V+Y
Sbjct: 357 GEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTY 416

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
            ALIHGLIVAGEVD+ALT+ ++M+E+GV PDANIYNVLM+GL KKG+L  AKV+L EMLD
Sbjct: 417 AALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLD 476

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
           QN+APDAFI ATLVDGFIRHG+ +EAKKLF+LTIEKGIDPGVVGYN MIKG+ KFGMM D
Sbjct: 477 QNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKD 536

Query: 184 AILCIDRMRSAHHVPD 200
           A+LC  RM    H PD
Sbjct: 537 ALLCFKRMIQGLHSPD 552

[Close]

BLAST of Lsi07G004720 vs. TAIR 10
Match: AT1G52620.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-55
Identity = 99/196 (50.51%), Postives = 143/196 (72.96%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           G+   A   L++  K GL P+  +Y PL+  YCK  EY  AS LL++M+ RG + D+V+Y
Sbjct: 359 GKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTY 418

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
           G LIHGL+V+G +D A+ +  ++++RGV PDA IYN+LM+GL K G+   AK++ +EMLD
Sbjct: 419 GILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLD 478

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
           +NI PDA++YATL+DGFIR G+ DEA+K+F L++EKG+   VV +N MIKGF + GM+D+
Sbjct: 479 RNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDE 538

Query: 184 AILCIDRMRSAHHVPD 200
           A+ C++RM   H VPD
Sbjct: 539 ALACMNRMNEEHLVPD 554

[Close]

BLAST of Lsi07G004720 vs. TAIR 10
Match: AT3G22470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-30
Identity = 71/205 (34.63%), Postives = 109/205 (53.17%), Query Frame = 0


Query: 3   RGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVS 62
           +G V+EA  L+++ ++ G  PD+ TY P+++  CK G    A DL  +M  R  +  +V 
Sbjct: 188 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247

Query: 63  YGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEML 122
           Y  +I  L   G  D AL++++ M  +G+  D   Y+ L+ GL   GK      ML EM+
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 123 DQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMD 182
            +NI PD   ++ L+D F++ G L EAK+L+   I +GI P  + YN +I GF K   + 
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 367

Query: 183 DAILCIDRMRSAHHVPDNIQELIKI 208
           +A    D M S    PD +   I I
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILI 392

[Close]

BLAST of Lsi07G004720 vs. TAIR 10
Match: AT5G65560.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-30
Identity = 70/205 (34.15%), Postives = 112/205 (54.63%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           G V EA + + + +++GL PD FTYT L+ GYC++ +   A  +  EM  +G   + V+Y
Sbjct: 232 GNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAY 291

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
             LIHGL VA  +D A+ ++ +M +   FP    Y VL+  L    + S A  ++ EM +
Sbjct: 292 THLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEE 351

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
             I P+   Y  L+D        ++A++L    +EKG+ P V+ YN +I G+ K GM++D
Sbjct: 352 TGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIED 411

Query: 184 AILCIDRMRSAHHVPD--NIQELIK 207
           A+  ++ M S    P+     ELIK
Sbjct: 412 AVDVVELMESRKLSPNTRTYNELIK 436

[Close]

BLAST of Lsi07G004720 vs. TAIR 10
Match: AT1G12775.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-29
Identity = 62/196 (31.63%), Postives = 111/196 (56.63%), Query Frame = 0


Query: 4   GEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVSY 63
           G+V++A  L+++ +++G  P++ TY P+++  CK G+   A +LL +M  R  ++D V Y
Sbjct: 207 GKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 266

Query: 64  GALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEMLD 123
             +I GL   G +D A  +++ M  +G   D   YN L+ G    G+      +L +M+ 
Sbjct: 267 SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326

Query: 124 QNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMDD 183
           + I+P+   ++ L+D F++ G L EA +L +  +++GI P  + YN +I GF K   +++
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386

Query: 184 AILCIDRMRSAHHVPD 200
           AI  +D M S    PD
Sbjct: 387 AIQMVDLMISKGCDPD 402

[Close]

BLAST of Lsi07G004720 vs. TAIR 10
Match: AT1G74580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 4.7e-29
Identity = 65/197 (32.99%), Postives = 107/197 (54.31%), Query Frame = 0


Query: 3   RGEVTEAEKLLEQTIKSGLAPDKFTYTPLVHGYCKQGEYIRASDLLIEMSTRGHEVDMVS 62
           +G+V E EKLL++ IK G+ P+ FTY   + G C++GE   A  ++  +  +G + D+++
Sbjct: 229 KGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVIT 288

Query: 63  YGALIHGLIVAGEVDIALTIWDRMMERGVFPDANIYNVLMNGLFKKGKLSMAKVMLTEML 122
           Y  LI+GL    +   A     +M+  G+ PD+  YN L+ G  K G + +A+ ++ + +
Sbjct: 289 YNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAV 348

Query: 123 DQNIAPDAFIYATLVDGFIRHGNLDEAKKLFQLTIEKGIDPGVVGYNVMIKGFSKFGMMD 182
                PD F Y +L+DG    G  + A  LF   + KGI P V+ YN +IKG S  GM+ 
Sbjct: 349 FNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMIL 408

Query: 183 DAILCIDRMRSAHHVPD 200
           +A    + M     +P+
Sbjct: 409 EAAQLANEMSEKGLIPE 425

The following BLAST results are available for this feature:

BLAST of Lsi07G004720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSR4	1.4e-54	50.51	Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana OX...	[more]
Q6NQ83	7.9e-29	34.63	Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop...	[more]
Q9LSL9	7.9e-29	34.15	Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX...	[more]
Q9LPX2	3.9e-28	31.63	Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidop...	[more]
Q9SH60	6.6e-28	32.47	Pentatricopeptide repeat-containing protein At1g64100 OS=Arabidopsis thaliana OX...	[more]

BLAST of Lsi07G004720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLP1	3.8e-95	87.37	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BYA4	3.8e-95	87.37	pentatricopeptide repeat-containing protein At1g52620 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0KTD1	4.2e-94	86.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004900 PE=4 SV=1	[more]
A0A6J1DHT9	2.8e-93	87.24	pentatricopeptide repeat-containing protein At1g52620 OS=Momordica charantia OX=...	[more]
B9RV43	7.3e-78	72.96	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis OX=398...	[more]

BLAST of Lsi07G004720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894903.1	1.0e-97	90.91	pentatricopeptide repeat-containing protein At1g52620 [Benincasa hispida]	[more]
XP_008454246.1	7.9e-95	87.37	PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Cucumis melo] ...	[more]
XP_004152354.1	8.8e-94	86.87	pentatricopeptide repeat-containing protein At1g52620 [Cucumis sativus] >KGN5288...	[more]
XP_022153568.1	5.7e-93	87.24	pentatricopeptide repeat-containing protein At1g52620 [Momordica charantia]	[more]
XP_002517612.2	1.5e-77	72.96	pentatricopeptide repeat-containing protein At1g52620 [Ricinus communis]	[more]

BLAST of Lsi07G004720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52620.1	1.0e-55	50.51	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G22470.1	5.6e-30	34.63	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G65560.1	5.6e-30	34.15	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G12775.1	2.8e-29	31.63	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G74580.1	4.7e-29	32.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 20..52 e-value: 2.5E-8 score: 33.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 93..140 e-value: 2.8E-9 score: 37.0
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 168..193 e-value: 1.3E-5 score: 25.1 coord: 61..91 e-value: 6.9E-5 score: 22.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 26..59 e-value: 3.1E-6 score: 25.0 coord: 168..199 e-value: 6.7E-7 score: 27.1 coord: 61..95 e-value: 8.6E-8 score: 29.9 coord: 97..130 e-value: 5.3E-7 score: 27.4 coord: 132..164 e-value: 4.1E-6 score: 24.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 59..93 score: 11.597113
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 129..163 score: 11.882107
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 24..58 score: 10.742131
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 94..128 score: 10.796938
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 164..198 score: 10.018685
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 74..212 e-value: 1.7E-32 score: 115.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..73 e-value: 5.6E-15 score: 57.1
None	No IPR available	PANTHER	PTHR47938	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	coord: 3..200
None	No IPR available	PANTHER	PTHR47938:SF15	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 3..200
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 4..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G004720.1	Lsi07G004720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
biological_process	GO:0000963	mitochondrial RNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005515	protein binding
molecular_function	GO:1990825	sequence-specific mRNA binding