Lsi07G004380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G004380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ethylene-responsive transcription factor ERF003-like
Location	chr07: 4672409 .. 4674084 (-)
RNA-Seq Expression	Lsi07G004380
Synteny	Lsi07G004380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCATTCTATAATGGGAAGACCTCAACAACGCTATCGAGGAGTCCGTCAAAGGCATTGGGGCTCTTGGGTTTCTGAGATTCGTCACCCTTTACTGTAAATTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAATCACTTCTCCATCTTCTTCCAACCTTTTCTCTCTTTACTTATCAACACCATATTTCAAAGTCGTGATATAATTATTTGTTTATAACTATGCTTTTCATATCATTTCTCCAATTAATGTTTTATTTTTCAATCAACTTAATTTAGTAGTAATCAACATGCATTTCTTTTCGAAATTCTCATTTTCACAATTGTTATATATATATCATTTTCATACCATAAATATTGACTTTTGAGTTATCCAAAAGTTATTTGAGAATGAAATAACAAAATAAAATATAATTTTAACAATTTCAAAACTACTCTTAAACCTAATTCAAACTCCCTATCTAACTATATATATATATATATATATATATATATATATATGTTTATGATCAATACTTAGAGTGAATTAATTCTGGACTATACACATCTTTTTGCATCCACCATAATCATATAGTAGATGAAAAAAAAACTTGGTCAATATTTTCTTTAAAAGAAAAATAAGAGTTTGTCACGTGGTCAAACGGTTGTTGGACAACTAAGTAAAGTTGAAAACATATGGGTGCAAGTGGAACCATATTTTCCTACCTTGAAATAACTATTTAGTACATCAAGTTTAGTACAAAACAATTATCTAGTTTCAAAATTCATAATGATTTAGTTCTTGAATTTTAGTATATCATTTCTGCGGTGAAAAAAATTTAATCAGGAGAAATTGTTATATGGTAAAGTTGAAAATTTAAAATGAAAAAGATGGAAATTAAGTCTAAATTAGCAAAATACTTACAAATAGAGAAAAATTTCACTCAATATCTACAATAAATTGCGATAGACTACTATTTGCATCTATCTATAGTCTATCACGACACAGATAATAGTTTGTCGCAGTCTATTGCAGACAGTGAAATTTTATTATAATTATAAATATTTTCAAAATTTTGTCATTTAAAATAATTTTCATTTAAATTAAAGAAATACAATTGTTGCTTGACAACATAAAACCACACAACAAAGAATTATTGATTTGTAAATCGTGAAAGTGTTTAAAAAAAATTATAATTTGTTAAATTCTGAATCAATATGATCAGGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCAGAAGACGCCGCCAGAGCATACGACGAAGCAGCTACAATTATGTGTTGCCCAAACAATCTCCCAACCAATAACAATGCGCCACCTCATCCCTCGTCGGCGCCGCCGTCCTCTAAGCTTCTAACTCCCACTTTGATCGAGAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCACTTCGCCGTCCGGAAATCCCCCGACCCAACTCACCGTCCGCCCACCAAACTCCACGGCAGTCACTGGCCGGAAACAGAGGTCAAGTGGGTCGCCGGCGGGGAGGCTGAGGAGGTCCGCCGCCTTGAAGATGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTCGGTTCTACAAAATAATTAAAATATATTATTTAAGAAATAAA

mRNA sequence

CTCTCTCATTCTATAATGGGAAGACCTCAACAACGCTATCGAGGAGTCCGTCAAAGGCATTGGGGCTCTTGGGTTTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCAGAAGACGCCGCCAGAGCATACGACGAAGCAGCTACAATTATGTGTTGCCCAAACAATCTCCCAACCAATAACAATGCGCCACCTCATCCCTCGTCGGCGCCGCCGTCCTCTAAGCTTCTAACTCCCACTTTGATCGAGAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCACTTCGCCGTCCGGAAATCCCCCGACCCAACTCACCGTCCGCCCACCAAACTCCACGGCAGTCACTGGCCGGAAACAGAGGTCAAGTGGGTCGCCGGCGGGGAGGCTGAGGAGGTCCGCCGCCTTGAAGATGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTCGGTTCTACAAAATAATTAAAATATATTATTTAAGAAATAAA

Coding sequence (CDS)

ATGGGAAGACCTCAACAACGCTATCGAGGAGTCCGTCAAAGGCATTGGGGCTCTTGGGTTTCTGAGATTCGTCACCCTTTACTGAAGACAAGGATATGGCTGGGCACTTTCGAAACGGCAGAAGACGCCGCCAGAGCATACGACGAAGCAGCTACAATTATGTGTTGCCCAAACAATCTCCCAACCAATAACAATGCGCCACCTCATCCCTCGTCGGCGCCGCCGTCCTCTAAGCTTCTAACTCCCACTTTGATCGAGAAGTTGCAAAGATGTCGAATGGCTTCCCTCCAAATGACCAAAACCCACTTCGCCGTCCGGAAATCCCCCGACCCAACTCACCGTCCGCCCACCAAACTCCACGGCAGTCACTGGCCGGAAACAGAGGTCAAGTGGGTCGCCGGCGGGGAGGCTGAGGAGGTCCGCCGCCTTGAAGATGACCACGTGGAGCAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATGATAATCATAATTTCGGTTCTACAAAATAA

Protein sequence

MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNLPTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQMTKTHFAVRKSPDPTHRPPTKLHGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNHNFGSTK

Homology

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BLAST of Lsi07G004380 vs. ExPASy Swiss-Prot
Match: Q94AW5 (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 GN=ERF003 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-41
Identity = 102/178 (57.30%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCP--- 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA +MC P   
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  NNLPTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQMTK-------THFAVRKSPD 120
            N P N NA P       SSKLL+ TL  KL +C MASLQMTK       T  A  +S D
Sbjct: 61  TNFPYNPNAIP-----TSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSAD 120

Query: 121 PTHRPPTKLHGSH--WPETEVKWVAGGE--AEEVRRLEDDHVEQMIQELLDLGSFEFC 165
                  + H +      TE+KW  G     +  R LE+DH+EQMI+ELL  GS E C
Sbjct: 121 SDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELC 173

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BLAST of Lsi07G004380 vs. ExPASy Swiss-Prot
Match: P16146 (Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 72/103 (69.90%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMC---CP 60
           M RPQQRYRG RQRHWGSWVSEIRH +LKTRIW GTFE+AEDAARAYDEAA +MC     
Sbjct: 1   MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61  NNLPTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQMTK 101
            N P N NA     S   SSKLL+ TLI KL RC MASLQMT+
Sbjct: 61  TNFPYNPNA-----SQSSSSKLLSATLIAKLHRCYMASLQMTR 98

[Close]

BLAST of Lsi07G004380 vs. ExPASy Swiss-Prot
Match: Q9XI33 (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-20
Identity = 77/195 (39.49%), Postives = 94/195 (48.21%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPN---NLPT 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA +M   N   N P 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NNNAPPHPS------------SAPPSSKLLTPTLIEKLQRC------------------- 125
           NNN     S            S+  SS  L+  L  KL++C                   
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSH 124

Query: 126 ------RMASLQMTKTHFAVRKSPDPTHRPPTKLHGSH---WPETEVKWVAGGEAEEVRR 158
                 R  S   +     V   P  + +  T          P TEV+   GG  EEV  
Sbjct: 125 IGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVE--IGGSREEVLD 184

[Close]

BLAST of Lsi07G004380 vs. ExPASy Swiss-Prot
Match: Q9LFN7 (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702 GN=SHN2 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-17
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPN---NLPT 65
           +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA +M   N   N P 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66  NNNAPPHPSSAPPSSKLLTPTLIEKL--QRCRMASLQMTKTHFAVRKSPDPTH 114
             +          +S L++P  + +L   + R +   +T +   +R   D +H
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSH 117

[Close]

BLAST of Lsi07G004380 vs. ExPASy Swiss-Prot
Match: Q3E958 (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702 GN=SHN3 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-16
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIM---CCPNNLP- 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA +M       N P 
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 --TNNNAPPHPSSAPPSSKLLTPTLIEKLQR 91
            +N +     +SA  S K L+  L  KL++
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSELLNAKLRK 95

[Close]

BLAST of Lsi07G004380 vs. ExPASy TrEMBL
Match: A0A1S3BY29 (ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=LOC103494684 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 145/170 (85.29%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCC-PNN 60
           MGRPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAATIMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 61  LPTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQMTKTHFAVRKSPDPTHRPPTKL 120
           L TN++AP HPS A PSSKLLTPTLIEKLQRCRMASLQMTK  FAVRKS DPT  P TKL
Sbjct: 61  LSTNHSAPHHPSPASPSSKLLTPTLIEKLQRCRMASLQMTKAQFAVRKSADPTQSPATKL 120

Query: 121 HGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNH 170
            G HWPE E +WV+  E EEVRRLEDDHVEQMIQELLDLGSFEFCPN+N+
Sbjct: 121 EGGHWPEKEARWVSSREVEEVRRLEDDHVEQMIQELLDLGSFEFCPNNNN 170

[Close]

BLAST of Lsi07G004380 vs. ExPASy TrEMBL
Match: A0A0A0KVJ4 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006210 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 147/178 (82.58%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCC-PNN 60
           MGRPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAATIMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 61  LPTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQMTKTHFAVRKSPDPTHRPPTKL 120
           L TN++A  HPSSAP SSKLLTPT IEKLQRCRMASLQMTK  FAVRKS DPT  P TKL
Sbjct: 61  LSTNHSASHHPSSAPLSSKLLTPTSIEKLQRCRMASLQMTKAQFAVRKSADPTQSPATKL 120

Query: 121 HGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDN---HNFGST 175
            G HWPE   +WV   E EEVRRLED+HVEQMIQELLDLGSFEFCPN+N   H+FGST
Sbjct: 121 DGGHWPEKAARWVPSREVEEVRRLEDEHVEQMIQELLDLGSFEFCPNNNNNHHHFGST 178

[Close]

BLAST of Lsi07G004380 vs. ExPASy TrEMBL
Match: A0A6J1GC95 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=3662 GN=LOC111452652 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.8e-70
Identity = 139/182 (76.37%), Postives = 149/182 (81.87%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNL 60
           M RPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA IMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNNNAPPHPSSA-PPSSKLLTPTLIEKLQRCRMASLQM------TKTHFAVRKSPDPTH 120
           PTN+NAP H  SA PPSS LLTPTLIEKLQ+CR AS QM       KTHF+ RKS  P+ 
Sbjct: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 121 RPPTKL------HGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPND 170
           R PT         G H+PET+ KWVAGGEA+E+ RLEDDHVEQMIQELLDLGSFEFCPN+
Sbjct: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

[Close]

BLAST of Lsi07G004380 vs. ExPASy TrEMBL
Match: A0A6J1KDM8 (ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661 GN=LOC111492899 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.1e-69
Identity = 137/182 (75.27%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNL 60
           M RPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA IMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQM------TKTHFAVRKSPDPTHR 120
           PTN NAP H  SAPP S LLTPTLIEKLQ+CR AS QM       KTHF+ RKS  P+  
Sbjct: 61  PTNRNAPLHSLSAPPPSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSRP 120

Query: 121 PPTKL------HGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDN 171
            PT L       G H+PET+ KWVAG EA+E+ RLEDDHVEQMIQELLDLGSFEFCPN+N
Sbjct: 121 QPTNLDDAYGSSGVHFPETDAKWVAGEEAQEIARLEDDHVEQMIQELLDLGSFEFCPNNN 180

[Close]

BLAST of Lsi07G004380 vs. ExPASy TrEMBL
Match: A0A6J1DIX5 (ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3673 GN=LOC111020953 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.3e-55
Identity = 120/178 (67.42%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNL 60
           M RPQ +YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA IMCCPNNL
Sbjct: 1   MARPQHKYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNNNAPPHPSSAP----PSSKLLTPTLIEKLQRCRMASLQM------TKTHFAVRKSPD 120
            +N+NAPP  SS+     P SKLLTPTLI+KL++CRMAS QM      TKTH +     D
Sbjct: 61  SSNHNAPPQYSSSASTLGPVSKLLTPTLIDKLEKCRMASFQMAKKKLPTKTHLS-----D 120

Query: 121 PTHRPPTKLHGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDN 169
            + RP  KL G          V   E +E  RLEDDHVEQMIQELLDLGSF FCPN+N
Sbjct: 121 RSRRPAAKLDGG--------GVQSPETQEFHRLEDDHVEQMIQELLDLGSFHFCPNNN 165

[Close]

BLAST of Lsi07G004380 vs. NCBI nr
Match: XP_008454208.1 (PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 3.7e-77
Identity = 145/170 (85.29%), Postives = 152/170 (89.41%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCC-PNN 60
           MGRPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAATIMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 61  LPTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQMTKTHFAVRKSPDPTHRPPTKL 120
           L TN++AP HPS A PSSKLLTPTLIEKLQRCRMASLQMTK  FAVRKS DPT  P TKL
Sbjct: 61  LSTNHSAPHHPSPASPSSKLLTPTLIEKLQRCRMASLQMTKAQFAVRKSADPTQSPATKL 120

Query: 121 HGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDNH 170
            G HWPE E +WV+  E EEVRRLEDDHVEQMIQELLDLGSFEFCPN+N+
Sbjct: 121 EGGHWPEKEARWVSSREVEEVRRLEDDHVEQMIQELLDLGSFEFCPNNNN 170

[Close]

BLAST of Lsi07G004380 vs. NCBI nr
Match: XP_031740459.1 (ethylene-responsive transcription factor ERF003 [Cucumis sativus] >KGN52914.1 hypothetical protein Csa_015366 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 4.1e-76
Identity = 147/178 (82.58%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCC-PNN 60
           MGRPQQRYRGVRQRHWGSWVSEIRHP+LKTRIWLGTFETAEDAARAYDEAATIMCC PNN
Sbjct: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAATIMCCTPNN 60

Query: 61  LPTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQMTKTHFAVRKSPDPTHRPPTKL 120
           L TN++A  HPSSAP SSKLLTPT IEKLQRCRMASLQMTK  FAVRKS DPT  P TKL
Sbjct: 61  LSTNHSASHHPSSAPLSSKLLTPTSIEKLQRCRMASLQMTKAQFAVRKSADPTQSPATKL 120

Query: 121 HGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDN---HNFGST 175
            G HWPE   +WV   E EEVRRLED+HVEQMIQELLDLGSFEFCPN+N   H+FGST
Sbjct: 121 DGGHWPEKAARWVPSREVEEVRRLEDEHVEQMIQELLDLGSFEFCPNNNNNHHHFGST 178

[Close]

BLAST of Lsi07G004380 vs. NCBI nr
Match: XP_022949239.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita moschata])

HSP 1 Score: 273.9 bits (699), Expect = 9.9e-70
Identity = 139/182 (76.37%), Postives = 149/182 (81.87%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNL 60
           M RPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA IMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNNNAPPHPSSA-PPSSKLLTPTLIEKLQRCRMASLQM------TKTHFAVRKSPDPTH 120
           PTN+NAP H  SA PPSS LLTPTLIEKLQ+CR AS QM       KTHF+ RKS  P+ 
Sbjct: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 121 RPPTKL------HGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPND 170
           R PT         G H+PET+ KWVAGGEA+E+ RLEDDHVEQMIQELLDLGSFEFCPN+
Sbjct: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGEAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

[Close]

BLAST of Lsi07G004380 vs. NCBI nr
Match: KAG6606826.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272.7 bits (696), Expect = 2.2e-69
Identity = 138/182 (75.82%), Postives = 149/182 (81.87%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNL 60
           M RPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA IMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNNNAPPHPSSA-PPSSKLLTPTLIEKLQRCRMASLQM------TKTHFAVRKSPDPTH 120
           PTN+NAP H  SA PPSS LLTPTLIEKLQ+CR AS QM       KTHF+ RKS  P+ 
Sbjct: 61  PTNHNAPRHSLSAPPPSSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSR 120

Query: 121 RPPTKL------HGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPND 170
           R PT         G H+PET+ KWVAGG+A+E+ RLEDDHVEQMIQELLDLGSFEFCPN+
Sbjct: 121 RQPTNFDDGYGASGVHFPETDSKWVAGGQAQEIARLEDDHVEQMIQELLDLGSFEFCPNN 180

[Close]

BLAST of Lsi07G004380 vs. NCBI nr
Match: XP_022998174.1 (ethylene-responsive transcription factor ERF003-like [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 2.2e-69
Identity = 137/182 (75.27%), Postives = 147/182 (80.77%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPNNL 60
           M RPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA IMCCPNNL
Sbjct: 1   MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPNNL 60

Query: 61  PTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQM------TKTHFAVRKSPDPTHR 120
           PTN NAP H  SAPP S LLTPTLIEKLQ+CR AS QM       KTHF+ RKS  P+  
Sbjct: 61  PTNRNAPLHSLSAPPPSNLLTPTLIEKLQKCRTASFQMVKKQFPNKTHFSDRKSAHPSRP 120

Query: 121 PPTKL------HGSHWPETEVKWVAGGEAEEVRRLEDDHVEQMIQELLDLGSFEFCPNDN 171
            PT L       G H+PET+ KWVAG EA+E+ RLEDDHVEQMIQELLDLGSFEFCPN+N
Sbjct: 121 QPTNLDDAYGSSGVHFPETDAKWVAGEEAQEIARLEDDHVEQMIQELLDLGSFEFCPNNN 180

[Close]

BLAST of Lsi07G004380 vs. TAIR 10
Match: AT5G25190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 171.0 bits (432), Expect = 8.4e-43
Identity = 102/178 (57.30%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 1   MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCP--- 60
           M RPQQR+RGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA +MC P   
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  NNLPTNNNAPPHPSSAPPSSKLLTPTLIEKLQRCRMASLQMTK-------THFAVRKSPD 120
            N P N NA P       SSKLL+ TL  KL +C MASLQMTK       T  A  +S D
Sbjct: 61  TNFPYNPNAIP-----TSSSKLLSATLTAKLHKCYMASLQMTKQTQTQTQTQTARSQSAD 120

Query: 121 PTHRPPTKLHGSH--WPETEVKWVAGGE--AEEVRRLEDDHVEQMIQELLDLGSFEFC 165
                  + H +      TE+KW  G     +  R LE+DH+EQMI+ELL  GS E C
Sbjct: 121 SDGVTANESHLNRGVTETTEIKWEDGNANMQQNFRPLEEDHIEQMIEELLHYGSIELC 173

[Close]

BLAST of Lsi07G004380 vs. TAIR 10
Match: AT1G15360.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-21
Identity = 77/195 (39.49%), Postives = 94/195 (48.21%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPN---NLPT 65
           +++RGVRQRHWGSWV+EIRHPLLK RIWLGTFETAE+AARAYDEAA +M   N   N P 
Sbjct: 5   KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFPL 64

Query: 66  NNNAPPHPS------------SAPPSSKLLTPTLIEKLQRC------------------- 125
           NNN     S            S+  SS  L+  L  KL++C                   
Sbjct: 65  NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDTASSH 124

Query: 126 ------RMASLQMTKTHFAVRKSPDPTHRPPTKLHGSH---WPETEVKWVAGGEAEEVRR 158
                 R  S   +     V   P  + +  T          P TEV+   GG  EEV  
Sbjct: 125 IGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAILAPTTEVE--IGGSREEVLD 184

[Close]

BLAST of Lsi07G004380 vs. TAIR 10
Match: AT5G11190.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-18
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 6   QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIMCCPN---NLPT 65
           +++RGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA +M   N   N P 
Sbjct: 5   RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64

Query: 66  NNNAPPHPSSAPPSSKLLTPTLIEKL--QRCRMASLQMTKTHFAVRKSPDPTH 114
             +          +S L++P  + +L   + R +   +T +   +R   D +H
Sbjct: 65  VKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSH 117

[Close]

BLAST of Lsi07G004380 vs. TAIR 10
Match: AT5G25390.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 9.3e-18
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 6  QRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAATIM---CCPNNLP- 65
          +++RGVRQR WGSWVSEIRHPLLK R+WLGTF+TAE AARAYD+AA +M       N P 
Sbjct: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64

Query: 66 --TNNNAPPHPSSAPPSSKLLTPTLIEKLQR 91
            +N +     +SA  S K L+  L  KL++
Sbjct: 65 IKSNGSNSLEINSALRSPKSLSELLNAKLRK 95

[Close]

BLAST of Lsi07G004380 vs. TAIR 10
Match: AT1G78080.1 (related to AP2 4 )

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-15
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 3   RPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAA 52
           +P + YRGVRQRHWG WV+EIR P  +TR+WLGTF+TAE+AA AYD+AA
Sbjct: 147 KPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAA 195

The following BLAST results are available for this feature:

BLAST of Lsi07G004380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AW5	1.2e-41	57.30	Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana OX=3702 ...	[more]
P16146	1.2e-30	69.90	Protein PPLZ02 OS=Lupinus polyphyllus OX=3874 GN=PPLZ02 PE=2 SV=1	[more]
Q9XI33	1.5e-20	39.49	Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LFN7	3.5e-17	45.13	Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana OX=3702...	[more]
Q3E958	1.3e-16	53.85	Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Lsi07G004380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BY29	1.8e-77	85.29	ethylene-responsive transcription factor ERF003-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0KVJ4	2.0e-76	82.58	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006210 PE=...	[more]
A0A6J1GC95	4.8e-70	76.37	ethylene-responsive transcription factor ERF003-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KDM8	1.1e-69	75.27	ethylene-responsive transcription factor ERF003-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1DIX5	4.3e-55	67.42	ethylene-responsive transcription factor ERF003-like OS=Momordica charantia OX=3...	[more]

BLAST of Lsi07G004380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454208.1	3.7e-77	85.29	PREDICTED: ethylene-responsive transcription factor ERF003-like [Cucumis melo]	[more]
XP_031740459.1	4.1e-76	82.58	ethylene-responsive transcription factor ERF003 [Cucumis sativus] >KGN52914.1 hy...	[more]
XP_022949239.1	9.9e-70	76.37	ethylene-responsive transcription factor ERF003-like [Cucurbita moschata]	[more]
KAG6606826.1	2.2e-69	75.82	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022998174.1	2.2e-69	75.27	ethylene-responsive transcription factor ERF003-like [Cucurbita maxima]	[more]

BLAST of Lsi07G004380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25190.1	8.4e-43	57.30	Integrase-type DNA-binding superfamily protein	[more]
AT1G15360.1	1.1e-21	39.49	Integrase-type DNA-binding superfamily protein	[more]
AT5G11190.1	2.5e-18	45.13	Integrase-type DNA-binding superfamily protein	[more]
AT5G25390.2	9.3e-18	53.85	Integrase-type DNA-binding superfamily protein	[more]
AT1G78080.1	3.3e-15	69.39	related to AP2 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 30..46 score: 70.91 coord: 8..19 score: 66.97
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 7..67 e-value: 9.0E-30 score: 114.9
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 7..51 e-value: 3.9E-11 score: 43.0
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 7..67 score: 18.992506
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 6..55 e-value: 5.13228E-28 score: 97.3422
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 6..65 e-value: 6.7E-21 score: 76.2
None	No IPR available	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 1..165
None	No IPR available	PANTHER	PTHR31194:SF48	ETHYLENE RESPONSE FACTOR	coord: 1..165
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 7..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G004380.1	Lsi07G004380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity