Lsi07G004000 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G004000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ethylene-responsive transcription factor LEP-like
Location	chr07: 4322108 .. 4322812 (+)
RNA-Seq Expression	Lsi07G004000
Synteny	Lsi07G004000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCAAGAACTCCAAAACCAGCTCCCCTTCTTCATCCAAGCCAAGAAGATCAAAGCAACAAGATCAACACCCAAATCAACAAGAACCCACTAGATTTCTTGGTGTTAGAAGGCGCCCATGGGGCAGATATGCTGCTGAAATTAGAGACCCTTCTACTAAAGAGAGGCATTGGCTCGGTACCTTCGACACCGCCGAAGAGGCTGCCTTAGCCTACGACCGAGCCGCCCGGTCCATGCGTGGCTCCAAGGCTCGCACCAATTTCGTCTACTCAGACATGCCTCATGGCTCCTCCGTCACCTCCATTATCTCTCCAGACGAATCCCAACTCTTCCCTCCAACTCCTACTCCTACTTCTCTAGCTCCCCTAACTCAACCCAACCACCTCTGCTTCACCCTCCACGACGACCCTTTCACCACCAGCTCATTCCCGGGCAACGACTGGTTGCCCGACGCTGACTCTTACCAACCCGTCACTGCCTTCATGGACACCGGCATCTCACACGACGACGCTGAACTCCCTCCGCTCCCACCCGATGCATCTTCCTCCTACGAATGTGCCACCATGATTGATTGGTCTACTCCCTCCTCTTCTTCCTCTTCCTCGTTTATGGGATTTGATTCCAACGTGGTTTTGCCGCCCTTCCCTGACACCGGTACCGACGCCTTTGGATTCGGTTCCTCATCCACCTACTTCTATTGA

mRNA sequence

ATGGACTTCAAGAACTCCAAAACCAGCTCCCCTTCTTCATCCAAGCCAAGAAGATCAAAGCAACAAGATCAACACCCAAATCAACAAGAACCCACTAGATTTCTTGGTGTTAGAAGGCGCCCATGGGGCAGATATGCTGCTGAAATTAGAGACCCTTCTACTAAAGAGAGGCATTGGCTCGGTACCTTCGACACCGCCGAAGAGGCTGCCTTAGCCTACGACCGAGCCGCCCGGTCCATGCGTGGCTCCAAGGCTCGCACCAATTTCGTCTACTCAGACATGCCTCATGGCTCCTCCGTCACCTCCATTATCTCTCCAGACGAATCCCAACTCTTCCCTCCAACTCCTACTCCTACTTCTCTAGCTCCCCTAACTCAACCCAACCACCTCTGCTTCACCCTCCACGACGACCCTTTCACCACCAGCTCATTCCCGGGCAACGACTGGTTGCCCGACGCTGACTCTTACCAACCCGTCACTGCCTTCATGGACACCGGCATCTCACACGACGACGCTGAACTCCCTCCGCTCCCACCCGATGCATCTTCCTCCTACGAATGTGCCACCATGATTGATTGGTCTACTCCCTCCTCTTCTTCCTCTTCCTCGTTTATGGGATTTGATTCCAACGTGGTTTTGCCGCCCTTCCCTGACACCGGTACCGACGCCTTTGGATTCGGTTCCTCATCCACCTACTTCTATTGA

Coding sequence (CDS)

ATGGACTTCAAGAACTCCAAAACCAGCTCCCCTTCTTCATCCAAGCCAAGAAGATCAAAGCAACAAGATCAACACCCAAATCAACAAGAACCCACTAGATTTCTTGGTGTTAGAAGGCGCCCATGGGGCAGATATGCTGCTGAAATTAGAGACCCTTCTACTAAAGAGAGGCATTGGCTCGGTACCTTCGACACCGCCGAAGAGGCTGCCTTAGCCTACGACCGAGCCGCCCGGTCCATGCGTGGCTCCAAGGCTCGCACCAATTTCGTCTACTCAGACATGCCTCATGGCTCCTCCGTCACCTCCATTATCTCTCCAGACGAATCCCAACTCTTCCCTCCAACTCCTACTCCTACTTCTCTAGCTCCCCTAACTCAACCCAACCACCTCTGCTTCACCCTCCACGACGACCCTTTCACCACCAGCTCATTCCCGGGCAACGACTGGTTGCCCGACGCTGACTCTTACCAACCCGTCACTGCCTTCATGGACACCGGCATCTCACACGACGACGCTGAACTCCCTCCGCTCCCACCCGATGCATCTTCCTCCTACGAATGTGCCACCATGATTGATTGGTCTACTCCCTCCTCTTCTTCCTCTTCCTCGTTTATGGGATTTGATTCCAACGTGGTTTTGCCGCCCTTCCCTGACACCGGTACCGACGCCTTTGGATTCGGTTCCTCATCCACCTACTTCTATTGA

Protein sequence

MDFKNSKTSSPSSSKPRRSKQQDQHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTPTSLAPLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPLPPDASSSYECATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY

Homology

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BLAST of Lsi07G004000 vs. ExPASy Swiss-Prot
Match: Q9FZ90 (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana OX=3702 GN=ERF087 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-39
Identity = 110/239 (46.03%), Postives = 136/239 (56.90%), Query Frame = 0


Query: 9   SSPSSSKPRRSKQQDQHPNQQ---EPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDT 68
           S   S K  R KQQ   P  Q   E  +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDT
Sbjct: 11  SCSRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDT 70

Query: 69  AEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLF------PPTPTPT 128
           AEEAALAYDRAARS+RG  ARTNFVYSDMP GSSVTS +SPDESQ F      PP+    
Sbjct: 71  AEEAALAYDRAARSIRGLTARTNFVYSDMPRGSSVTSFVSPDESQRFISELFNPPSQLEA 130

Query: 129 SLAPLTQPNHLCFTLHDDPFTTSSFPGNDWLPDAD-SYQPVTAFMDTGISHDDAELPPLP 188
           + +     N+L  + ++    +  F  N W  +A+  YQ +T    +   H D ELPPLP
Sbjct: 131 TNSNNNNNNNLYSSTNNQNQNSIEFSYNGWPQEAECGYQSIT----SNAEHCDHELPPLP 190

Query: 189 PDASSSYEC---ATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY 235
           P      E     T   W+   +S  +     D  V       +GT+ F     ST+FY
Sbjct: 191 PSTCFGAELRIPETDSYWNVAHASIDTFAFELDGFVDQNSLGQSGTEGFN-SLPSTFFY 244

[Close]

BLAST of Lsi07G004000 vs. ExPASy Swiss-Prot
Match: Q9M644 (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=LEP PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-38
Identity = 109/223 (48.88%), Postives = 132/223 (59.19%), Query Frame = 0


Query: 12  SSSKPRRSKQQDQHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAL 71
           ++S   + KQ D     Q  TRFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAAL
Sbjct: 3   TTSSKSKKKQDD-----QVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAAL 62

Query: 72  AYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTPTSLAPLTQPNHLC 131
           AYDRAARSMRG++ARTNFVYSDMP  SSVTSI+SPD+    PP P P S  P+     + 
Sbjct: 63  AYDRAARSMRGTRARTNFVYSDMPPSSSVTSIVSPDDPPPPPPPPAPPSNDPVDY--MMM 122

Query: 132 FTLHDDPFTTSSFPGNDWLPDADSY-----QPVTAFMDTGISHDDAELPPLPPDASSSYE 191
           F  +    +    P  D     DSY     Q   ++  +  S +  ELPPLP D S+S  
Sbjct: 123 FNQYSSTDSPMLQPHCD---QVDSYMFGGSQSSNSYCYSNDSSN--ELPPLPSDLSNS-- 182

Query: 192 CATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFG-FGS 229
           C +   W+      SS ++       +PP  D+    F  FGS
Sbjct: 183 CYSQPQWTWTGDDYSSEYVHSPMFSRMPPVSDSFPQGFNYFGS 211

[Close]

BLAST of Lsi07G004000 vs. ExPASy Swiss-Prot
Match: Q8H3Q1 (Ethylene-responsive transcription factor FZP OS=Oryza sativa subsp. japonica OX=39947 GN=FZP PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-26
Identity = 62/87 (71.26%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 6   SKTSSPSSSKPRRSKQQDQHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDT 65
           S+ S PSS    R          QEP RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDT
Sbjct: 30  SQPSPPSSPMSERPPSGRSRRRAQEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDT 89

Query: 66  AEEAALAYDRAARSMRGSKARTNFVYS 93
           A+EAALAYDRAA SM+G++ARTNFVY+
Sbjct: 90  AQEAALAYDRAALSMKGAQARTNFVYT 116

[Close]

BLAST of Lsi07G004000 vs. ExPASy Swiss-Prot
Match: Q6J9Q2 (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana OX=3702 GN=ERF086 PE=1 SV=2)

HSP 1 Score: 119.0 bits (297), Expect = 7.1e-26
Identity = 67/121 (55.37%), Postives = 87/121 (71.90%), Query Frame = 0


Query: 5   NSKTSSPSSSKPRRSKQQDQHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFD 64
           +  TS+ +++     +++ +   Q EP RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFD
Sbjct: 26  HQNTSANTTTTTTTGERRGRRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFD 85

Query: 65  TAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTS------IISP-DESQLFPPTPT 119
           TA EAALAYDRAA SMRG++ARTNFVY+     + +T+      I+SP + +Q F P  +
Sbjct: 86  TAHEAALAYDRAALSMRGTQARTNFVYTPTDVHTILTNPNLHSLIVSPYNNNQSFLPNSS 145

[Close]

BLAST of Lsi07G004000 vs. ExPASy Swiss-Prot
Match: Q9SAD4 (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana OX=3702 GN=ESR1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.1e-21
Identity = 55/94 (58.51%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 32  TRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVY 91
           TR+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAE+AA AYD AAR+ RG+KARTNF Y
Sbjct: 55  TRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTY 114

Query: 92  SDMPHGSSVTSIISPDESQLFP-PTPTPTSLAPL 125
                    T++I P+    F     +P++  PL
Sbjct: 115 P--------TAVIMPEPRFSFSNKKSSPSARCPL 140

[Close]

BLAST of Lsi07G004000 vs. ExPASy TrEMBL
Match: A0A6J1IQE0 (ethylene-responsive transcription factor LEP-like OS=Cucurbita maxima OX=3661 GN=LOC111479578 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 1.1e-106
Identity = 204/238 (85.71%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 1   MDFKNSKTSSPSSSKPRRSKQQDQH--PNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60
           MDFKNS T+SPS SKPRR K  DQH  P+ QEPTRFLGVRRRPWGRYAAEIRDPSTKERH
Sbjct: 1   MDFKNSNTNSPSPSKPRR-KHHDQHPQPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60

Query: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTP 120
           WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQLFPPTPTP
Sbjct: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPTP 120

Query: 121 TSLA-PLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPL 180
           T  + P TQPNHLCFTLHDDPFT +SFPGNDWLPD+DSYQPVTAFMDTGI H D ELPPL
Sbjct: 121 TPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDSDSYQPVTAFMDTGIPHHDTELPPL 180

Query: 181 PPDASSSY-ECATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY 235
           PPDASSSY +CATMIDW   SSSSSSSF+GFDSN  LPPFPDT TD+FGFGSSS YFY
Sbjct: 181 PPDASSSYTDCATMIDW---SSSSSSSFIGFDSNAPLPPFPDTNTDSFGFGSSSNYFY 234

[Close]

BLAST of Lsi07G004000 vs. ExPASy TrEMBL
Match: A0A6J1GVK2 (ethylene-responsive transcription factor LEP-like OS=Cucurbita moschata OX=3662 GN=LOC111457873 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.1e-105
Identity = 203/238 (85.29%), Postives = 211/238 (88.66%), Query Frame = 0


Query: 1   MDFKNSKTSSPSSSKPRRSKQQDQ--HPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60
           MDFKNS T+SPS SKPRR K  DQ  HP+ QEPTRFLGVRRRPWGRYAAEIRDPSTKERH
Sbjct: 1   MDFKNSNTNSPSPSKPRR-KHHDQHPHPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60

Query: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTP 120
           WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQLFPPTPTP
Sbjct: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPTP 120

Query: 121 TSLA-PLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPL 180
           T  + P TQPNHLCFTLHDDPFT +SFPGNDWLPD DSYQPVTAFMDTGI H DAELPPL
Sbjct: 121 TPTSHPQTQPNHLCFTLHDDPFTATSFPGNDWLPDTDSYQPVTAFMDTGIPHHDAELPPL 180

Query: 181 PPDASSSY-ECATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY 235
           PPDASSSY +CATMIDW   SSSSSSSF+GFDSN  LPPFPD   DAFGF SSS YFY
Sbjct: 181 PPDASSSYNDCATMIDW---SSSSSSSFIGFDSNAPLPPFPDANNDAFGFDSSSNYFY 234

[Close]

BLAST of Lsi07G004000 vs. ExPASy TrEMBL
Match: A0A0A0KYM7 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G007070 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 7.0e-101
Identity = 200/239 (83.68%), Postives = 211/239 (88.28%), Query Frame = 0


Query: 1   MDFKNSKTSSP--SSSKPRRSKQQD-QHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60
           MDFK SKT+SP  SSSKPR+SKQQD Q P QQEPTRFLGVRRRPWGRYAAEIRDPSTKER
Sbjct: 1   MDFKTSKTNSPSSSSSKPRKSKQQDGQQPLQQEPTRFLGVRRRPWGRYAAEIRDPSTKER 60

Query: 61  HWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPT 120
           HWLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQL+PPTP 
Sbjct: 61  HWLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTP- 120

Query: 121 PTSLAPLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPL 180
                  TQPNHLCF    DPFTTSSFPGNDWLPD+DSYQPVTAFMD GI++DDAELPPL
Sbjct: 121 -------TQPNHLCF----DPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITNDDAELPPL 180

Query: 181 PPDASSSY-ECATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGT-DAFGFGSSSTYFY 235
           PPDASSSY +CA M+DWST SSSS+SSFMGF+SN V P FPDT T D FGFGSSSTYFY
Sbjct: 181 PPDASSSYNDCAAMVDWSTASSSSTSSFMGFNSNAVFPSFPDTSTSDGFGFGSSSTYFY 227

[Close]

BLAST of Lsi07G004000 vs. ExPASy TrEMBL
Match: A0A1S3BXG1 (ethylene-responsive transcription factor LEP-like OS=Cucumis melo OX=3656 GN=LOC103494646 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.5e-99
Identity = 198/239 (82.85%), Postives = 211/239 (88.28%), Query Frame = 0


Query: 1   MDFKNSKTSSP-SSSKPRRSKQQD-QHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60
           MDFK+SKT+SP SSSKPR+SKQQD Q P  QEPTRFLGVRRRPWGRYAAEIRDPSTKERH
Sbjct: 1   MDFKSSKTNSPSSSSKPRKSKQQDHQQPLPQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60

Query: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTP 120
           WLGTFDTAE+AALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQL+PPTPT 
Sbjct: 61  WLGTFDTAEDAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPT- 120

Query: 121 TSLAPLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPLP 180
                 +QPNHLCF    DPFTTSSFPGNDWLPD+DSYQPVTAFMD GI+HDDAELPPLP
Sbjct: 121 ------SQPNHLCF----DPFTTSSFPGNDWLPDSDSYQPVTAFMDNGITHDDAELPPLP 180

Query: 181 PDASSSYE--CATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTD-AFGFGSSSTYFY 235
           PDASSSY    A M+DWST  +SSSSSFMGF+SN V PPFPDT +D +FGFGSSSTYFY
Sbjct: 181 PDASSSYNDCAAAMVDWST--ASSSSSFMGFNSNAVFPPFPDTSSDGSFGFGSSSTYFY 226

[Close]

BLAST of Lsi07G004000 vs. ExPASy TrEMBL
Match: A0A6J1DVR8 (ethylene-responsive transcription factor LEP-like OS=Momordica charantia OX=3673 GN=LOC111024899 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 5.2e-72
Identity = 167/249 (67.07%), Postives = 182/249 (73.09%), Query Frame = 0


Query: 1   MDFKNSKTSSPS-SSKPRRSKQQDQHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHW 60
           MDF +SKT+S S SSKPRR +Q+ Q   QQE TRFLGVRRRPWGRYAAEIRDPSTKERHW
Sbjct: 1   MDFTDSKTNSTSTSSKPRRKQQEQQ--QQQETTRFLGVRRRPWGRYAAEIRDPSTKERHW 60

Query: 61  LGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTPT 120
           LGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSS+TSIISPDES    P P PT
Sbjct: 61  LGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSITSIISPDESADAFPPPIPT 120

Query: 121 SLAPLTQPNHLCFTLHDDPFTTSSFPGNDWLPDAD---------SYQPVTAFMDTGISH- 180
                TQ + L F LH DPF TS FPGN+WL ++D         +YQPVTAFMDTG+   
Sbjct: 121 P----TQNDQLSFALH-DPFATSPFPGNNWLSNSDFDHDVDLPSNYQPVTAFMDTGMPQA 180

Query: 181 DDAELPPLPPDASSSYECATMIDWSTPSSSSSSSFMGFDSN-VVLPPFPDTGTDAFGF-- 235
           D  ELPPLPPDASSSY              +  +FM +DSN  VLPPFPDT  D +GF  
Sbjct: 181 DSTELPPLPPDASSSY--------------NEYAFMSYDSNAAVLPPFPDTPADGYGFGF 228

[Close]

BLAST of Lsi07G004000 vs. NCBI nr
Match: XP_038877958.1 (ethylene-responsive transcription factor LEP-like [Benincasa hispida])

HSP 1 Score: 422.9 bits (1086), Expect = 1.8e-114
Identity = 215/236 (91.10%), Postives = 222/236 (94.07%), Query Frame = 0


Query: 1   MDFKNSKTS-SPSSSKPRRSKQQDQHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHW 60
           MDFKNSKT+ SPS SKPRR KQQDQ P+QQEPTRFLGVRRRPWGRYAAEIRDPSTKERHW
Sbjct: 1   MDFKNSKTNHSPSPSKPRR-KQQDQQPHQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHW 60

Query: 61  LGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTPT 120
           LGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQL+PPTPTPT
Sbjct: 61  LGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLYPPTPTPT 120

Query: 121 SLAPLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPLPP 180
           SL PL+QPNHLCFTLHDDPF+TSSFPGNDWLPD +SYQPVTAFMDTGI HDDAELPPLPP
Sbjct: 121 SLTPLSQPNHLCFTLHDDPFSTSSFPGNDWLPDTNSYQPVTAFMDTGIPHDDAELPPLPP 180

Query: 181 DASSSY-ECATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY 235
           DASSSY +CATMIDWST S SSSSSFM FDSN VLPPFPDT TDAFGFGSSS YFY
Sbjct: 181 DASSSYNDCATMIDWSTASPSSSSSFMAFDSNAVLPPFPDTSTDAFGFGSSSPYFY 235

[Close]

BLAST of Lsi07G004000 vs. NCBI nr
Match: KAG6581971.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 398.7 bits (1023), Expect = 3.5e-107
Identity = 206/238 (86.55%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 1   MDFKNSKTSSPSSSKPRRSKQQDQ--HPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60
           MDFKNS T+SPS SKPRR K QDQ  HP+ QEPTRFLGVRRRPWGRYAAEIRDPSTKERH
Sbjct: 1   MDFKNSNTNSPSPSKPRR-KHQDQHPHPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60

Query: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTP 120
           WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQLFPPTPTP
Sbjct: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPTP 120

Query: 121 TSLA-PLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPL 180
           T  + P TQPNHLCFTLHDDPFT +SFPGNDWLPD DSYQPVTAFMDTGI H DAELPPL
Sbjct: 121 TPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDTDSYQPVTAFMDTGIPHHDAELPPL 180

Query: 181 PPDASSSY-ECATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY 235
           PPDASSSY +CATMIDW   SSSSSSSF+GFDSN  LPPFPDT TD FGFGSSS YFY
Sbjct: 181 PPDASSSYNDCATMIDW---SSSSSSSFIGFDSNAPLPPFPDTNTDTFGFGSSSNYFY 234

[Close]

BLAST of Lsi07G004000 vs. NCBI nr
Match: XP_022980062.1 (ethylene-responsive transcription factor LEP-like [Cucurbita maxima])

HSP 1 Score: 396.0 bits (1016), Expect = 2.3e-106
Identity = 204/238 (85.71%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 1   MDFKNSKTSSPSSSKPRRSKQQDQH--PNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60
           MDFKNS T+SPS SKPRR K  DQH  P+ QEPTRFLGVRRRPWGRYAAEIRDPSTKERH
Sbjct: 1   MDFKNSNTNSPSPSKPRR-KHHDQHPQPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60

Query: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTP 120
           WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQLFPPTPTP
Sbjct: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPTP 120

Query: 121 TSLA-PLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPL 180
           T  + P TQPNHLCFTLHDDPFT +SFPGNDWLPD+DSYQPVTAFMDTGI H D ELPPL
Sbjct: 121 TPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDSDSYQPVTAFMDTGIPHHDTELPPL 180

Query: 181 PPDASSSY-ECATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY 235
           PPDASSSY +CATMIDW   SSSSSSSF+GFDSN  LPPFPDT TD+FGFGSSS YFY
Sbjct: 181 PPDASSSYTDCATMIDW---SSSSSSSFIGFDSNAPLPPFPDTNTDSFGFGSSSNYFY 234

[Close]

BLAST of Lsi07G004000 vs. NCBI nr
Match: XP_023528971.1 (ethylene-responsive transcription factor LEP-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.0 bits (1016), Expect = 2.3e-106
Identity = 203/238 (85.29%), Postives = 212/238 (89.08%), Query Frame = 0


Query: 1   MDFKNSKTSSPSSSKPRRS--KQQDQHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60
           MDFKNS T+SPS SKPRR    Q  QHP+ QEPTRFLGVRRRPWGRYAAEIRDPSTKERH
Sbjct: 1   MDFKNSNTNSPSPSKPRRKHHDQHSQHPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60

Query: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTP 120
           WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQLFPPTPTP
Sbjct: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPTP 120

Query: 121 TSLA-PLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPL 180
           T  + P TQPNHLCFTLHDDPFT +SFPGNDWLPD DSYQPVTAFMDTGI H +AELPPL
Sbjct: 121 TPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDTDSYQPVTAFMDTGIPHHNAELPPL 180

Query: 181 PPDASSSY-ECATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY 235
           PPDASSSY +CATMIDW   SSSSSSSF+GFDSN  LPPFPDT  DAFGFGSSS YFY
Sbjct: 181 PPDASSSYNDCATMIDW---SSSSSSSFIGFDSNTPLPPFPDTNNDAFGFGSSSNYFY 235

[Close]

BLAST of Lsi07G004000 vs. NCBI nr
Match: KAG7018390.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394.4 bits (1012), Expect = 6.7e-106
Identity = 204/238 (85.71%), Postives = 213/238 (89.50%), Query Frame = 0


Query: 1   MDFKNSKTSSPSSSKPRRSKQQDQH--PNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60
           MDFKNS T+SPS SKPRR K QDQH  P+ QEPTRFLGVRRRPWGRYAAEIRDPSTKERH
Sbjct: 1   MDFKNSNTNSPSPSKPRR-KHQDQHPQPHPQEPTRFLGVRRRPWGRYAAEIRDPSTKERH 60

Query: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTP 120
           WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVT+IISPD+SQLFPPTPTP
Sbjct: 61  WLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTTIISPDDSQLFPPTPTP 120

Query: 121 TSLA-PLTQPNHLCFTLHDDPFTTSSFPGNDWLPDADSYQPVTAFMDTGISHDDAELPPL 180
           T  + P TQPNHLCFTLHDDPFT +SFPGNDWLPD DSYQPVTAFM+TGI H DAELPPL
Sbjct: 121 TPTSLPQTQPNHLCFTLHDDPFTATSFPGNDWLPDTDSYQPVTAFMNTGIPHHDAELPPL 180

Query: 181 PPDASSSY-ECATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY 235
           PPDASSSY +CATMIDW   SSSSSSSF+GFDSN  LPPFPD   DAFGFGSSS YFY
Sbjct: 181 PPDASSSYNDCATMIDW---SSSSSSSFIGFDSNAPLPPFPDANNDAFGFGSSSNYFY 234

[Close]

BLAST of Lsi07G004000 vs. TAIR 10
Match: AT1G28160.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-40
Identity = 110/239 (46.03%), Postives = 136/239 (56.90%), Query Frame = 0


Query: 9   SSPSSSKPRRSKQQDQHPNQQ---EPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDT 68
           S   S K  R KQQ   P  Q   E  +++GVRRRPWGRYAAEIR+P+TKER+WLGTFDT
Sbjct: 11  SCSRSKKSHRQKQQQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDT 70

Query: 69  AEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLF------PPTPTPT 128
           AEEAALAYDRAARS+RG  ARTNFVYSDMP GSSVTS +SPDESQ F      PP+    
Sbjct: 71  AEEAALAYDRAARSIRGLTARTNFVYSDMPRGSSVTSFVSPDESQRFISELFNPPSQLEA 130

Query: 129 SLAPLTQPNHLCFTLHDDPFTTSSFPGNDWLPDAD-SYQPVTAFMDTGISHDDAELPPLP 188
           + +     N+L  + ++    +  F  N W  +A+  YQ +T    +   H D ELPPLP
Sbjct: 131 TNSNNNNNNNLYSSTNNQNQNSIEFSYNGWPQEAECGYQSIT----SNAEHCDHELPPLP 190

Query: 189 PDASSSYEC---ATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFGFGSSSTYFY 235
           P      E     T   W+   +S  +     D  V       +GT+ F     ST+FY
Sbjct: 191 PSTCFGAELRIPETDSYWNVAHASIDTFAFELDGFVDQNSLGQSGTEGFN-SLPSTFFY 244

[Close]

BLAST of Lsi07G004000 vs. TAIR 10
Match: AT5G13910.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-39
Identity = 109/223 (48.88%), Postives = 132/223 (59.19%), Query Frame = 0


Query: 12  SSSKPRRSKQQDQHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAL 71
           ++S   + KQ D     Q  TRFLGVRRRPWGRYAAEIRDP+TKERHWLGTFDTAEEAAL
Sbjct: 3   TTSSKSKKKQDD-----QVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAAL 62

Query: 72  AYDRAARSMRGSKARTNFVYSDMPHGSSVTSIISPDESQLFPPTPTPTSLAPLTQPNHLC 131
           AYDRAARSMRG++ARTNFVYSDMP  SSVTSI+SPD+    PP P P S  P+     + 
Sbjct: 63  AYDRAARSMRGTRARTNFVYSDMPPSSSVTSIVSPDDPPPPPPPPAPPSNDPVDY--MMM 122

Query: 132 FTLHDDPFTTSSFPGNDWLPDADSY-----QPVTAFMDTGISHDDAELPPLPPDASSSYE 191
           F  +    +    P  D     DSY     Q   ++  +  S +  ELPPLP D S+S  
Sbjct: 123 FNQYSSTDSPMLQPHCD---QVDSYMFGGSQSSNSYCYSNDSSN--ELPPLPSDLSNS-- 182

Query: 192 CATMIDWSTPSSSSSSSFMGFDSNVVLPPFPDTGTDAFG-FGS 229
           C +   W+      SS ++       +PP  D+    F  FGS
Sbjct: 183 CYSQPQWTWTGDDYSSEYVHSPMFSRMPPVSDSFPQGFNYFGS 211

[Close]

BLAST of Lsi07G004000 vs. TAIR 10
Match: AT5G18560.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-27
Identity = 67/121 (55.37%), Postives = 87/121 (71.90%), Query Frame = 0


Query: 5   NSKTSSPSSSKPRRSKQQDQHPNQQEPTRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFD 64
           +  TS+ +++     +++ +   Q EP RFLGVRRRPWGRYAAEIRDP+TKERHWLGTFD
Sbjct: 26  HQNTSANTTTTTTTGERRGRRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFD 85

Query: 65  TAEEAALAYDRAARSMRGSKARTNFVYSDMPHGSSVTS------IISP-DESQLFPPTPT 119
           TA EAALAYDRAA SMRG++ARTNFVY+     + +T+      I+SP + +Q F P  +
Sbjct: 86  TAHEAALAYDRAALSMRGTQARTNFVYTPTDVHTILTNPNLHSLIVSPYNNNQSFLPNSS 145

[Close]

BLAST of Lsi07G004000 vs. TAIR 10
Match: AT1G12980.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-22
Identity = 55/94 (58.51%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 32  TRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVY 91
           TR+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAE+AA AYD AAR+ RG+KARTNF Y
Sbjct: 55  TRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTY 114

Query: 92  SDMPHGSSVTSIISPDESQLFP-PTPTPTSLAPL 125
                    T++I P+    F     +P++  PL
Sbjct: 115 P--------TAVIMPEPRFSFSNKKSSPSARCPL 140

[Close]

BLAST of Lsi07G004000 vs. TAIR 10
Match: AT1G24590.1 (DORNROSCHEN-like )

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-22
Identity = 61/96 (63.54%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 33  RFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYS 92
           R+ GVRRRPWGRYAAEIRDP +KER WLGTFDTAEEAA AYD AAR+MRG KARTNFVY 
Sbjct: 57  RYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVY- 116

Query: 93  DMPHGSSVTSII---SPDESQLFPPTPTPTSLAPLT 126
            MP   S    I    P    L        SL+PLT
Sbjct: 117 PMPSLDSYHHRIFSSPPMNMFLLRDVLNSQSLSPLT 151

The following BLAST results are available for this feature:

BLAST of Lsi07G004000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ90	2.5e-39	46.03	Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9M644	1.6e-38	48.88	Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8H3Q1	3.2e-26	71.26	Ethylene-responsive transcription factor FZP OS=Oryza sativa subsp. japonica OX=...	[more]
Q6J9Q2	7.1e-26	55.37	Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SAD4	3.1e-21	58.51	Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Lsi07G004000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQE0	1.1e-106	85.71	ethylene-responsive transcription factor LEP-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1GVK2	2.1e-105	85.29	ethylene-responsive transcription factor LEP-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A0A0KYM7	7.0e-101	83.68	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G007070 PE=...	[more]
A0A1S3BXG1	6.5e-99	82.85	ethylene-responsive transcription factor LEP-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1DVR8	5.2e-72	67.07	ethylene-responsive transcription factor LEP-like OS=Momordica charantia OX=3673...	[more]

BLAST of Lsi07G004000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877958.1	1.8e-114	91.10	ethylene-responsive transcription factor LEP-like [Benincasa hispida]	[more]
KAG6581971.1	3.5e-107	86.55	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022980062.1	2.3e-106	85.71	ethylene-responsive transcription factor LEP-like [Cucurbita maxima]	[more]
XP_023528971.1	2.3e-106	85.29	ethylene-responsive transcription factor LEP-like [Cucurbita pepo subsp. pepo]	[more]
KAG7018390.1	6.7e-106	85.71	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of Lsi07G004000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28160.1	1.8e-40	46.03	Integrase-type DNA-binding superfamily protein	[more]
AT5G13910.1	1.2e-39	48.88	Integrase-type DNA-binding superfamily protein	[more]
AT5G18560.1	5.1e-27	55.37	Integrase-type DNA-binding superfamily protein	[more]
AT1G12980.1	2.2e-22	58.51	Integrase-type DNA-binding superfamily protein	[more]
AT1G24590.1	3.7e-22	63.54	DORNROSCHEN-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 34..45 score: 53.33 coord: 56..72 score: 69.2
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 33..96 e-value: 6.6E-35 score: 132.0
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 34..82 e-value: 1.4E-13 score: 50.8
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 33..90 score: 20.70536
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 32..89 e-value: 2.60874E-32 score: 110.439
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 32..91 e-value: 1.2E-25 score: 91.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	PANTHER	PTHR31677:SF63	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP-LIKE	coord: 2..207
None	No IPR available	PANTHER	PTHR31677	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	coord: 2..207
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 34..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G004000.1	Lsi07G004000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity