Lsi07G003600 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G003600
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	small G protein signaling modulator 1-like isoform X4
Location	chr07: 3841954 .. 3842139 (+)
RNA-Seq Expression	Lsi07G003600
Synteny	Lsi07G003600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTGTGGTGGAGAAGCTGATAAGCAATGGACTTGTGCAAAAGCCGGCGCTGCCAGTTTGCAGAGAGTGGGTTTGATTGTGCGAGACATTGGCGAGCCATGCCTTTCACAATCGCCCATAAAGGTTGTTATAACTGTAAGACGCTCATCAACTATGTGTATGCATGTGACTGAACGCTTCTGA

mRNA sequence

ATGTCTTGTGGTGGAGAAGCTGATAAGCAATGGACTTGTGCAAAAGCCGGCGCTGCCAGTTTGCAGAGAGTGGGTTTGATTGTGCGAGACATTGGCGAGCCATGCCTTTCACAATCGCCCATAAAGGTTGTTATAACTGTAAGACGCTCATCAACTATGTGTATGCATGTGACTGAACGCTTCTGA

Coding sequence (CDS)

ATGTCTTGTGGTGGAGAAGCTGATAAGCAATGGACTTGTGCAAAAGCCGGCGCTGCCAGTTTGCAGAGAGTGGGTTTGATTGTGCGAGACATTGGCGAGCCATGCCTTTCACAATCGCCCATAAAGGTTGTTATAACTGTAAGACGCTCATCAACTATGTGTATGCATGTGACTGAACGCTTCTGA

Protein sequence

MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRRSSTMCMHVTERF

Homology

[Close]

BLAST of Lsi07G003600 vs. ExPASy TrEMBL
Match: A0A1S3BXB1 (small G protein signaling modulator 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494612 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.1e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. ExPASy TrEMBL
Match: A0A0A0KVX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G010930 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.1e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. ExPASy TrEMBL
Match: A0A1S3BXU1 (small G protein signaling modulator 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494612 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.1e-17
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. ExPASy TrEMBL
Match: A0A6J1F2U5 (small G protein signaling modulator 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439159 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEADKQWTCAKAGAASLQ++GLIVRDIGEPCL QSPIKVVI V R
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAVNR 49

[Close]

BLAST of Lsi07G003600 vs. ExPASy TrEMBL
Match: A0A6J1EXQ4 (small G protein signaling modulator 1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111439159 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEADKQWTCAKAGAASLQ++GLIVRDIGEPCL QSPIKVVI V R
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAVNR 49

[Close]

BLAST of Lsi07G003600 vs. NCBI nr
Match: XP_004152145.1 (small G protein signaling modulator 1 isoform X10 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. NCBI nr
Match: XP_008454103.1 (PREDICTED: small G protein signaling modulator 1 isoform X3 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. NCBI nr
Match: XP_031739882.1 (small G protein signaling modulator 1 isoform X4 [Cucumis sativus] >KAE8649087.1 hypothetical protein Csa_014837 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. NCBI nr
Match: XP_008454099.1 (PREDICTED: small G protein signaling modulator 1 isoform X1 [Cucumis melo] >XP_008454100.1 PREDICTED: small G protein signaling modulator 1 isoform X1 [Cucumis melo] >XP_008454101.1 PREDICTED: small G protein signaling modulator 1 isoform X1 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 1.7e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEA KQWTCAKAGAASLQ+VGLIVRDIGEPCLSQSPIKVVITV R
Sbjct: 1  MSCGGEAGKQWTCAKAGAASLQKVGLIVRDIGEPCLSQSPIKVVITVNR 49

[Close]

BLAST of Lsi07G003600 vs. NCBI nr
Match: XP_023540587.1 (small G protein signaling modulator 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540588.1 small G protein signaling modulator 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 8.3e-16
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1  MSCGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITVRR 50
          MSCGGEADKQWTCAKAGAASLQ++GLIVRDIGEPCL QSPIKVVI V R
Sbjct: 1  MSCGGEADKQWTCAKAGAASLQKMGLIVRDIGEPCLPQSPIKVVIAVNR 49

[Close]

BLAST of Lsi07G003600 vs. TAIR 10
Match: AT2G43490.1 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITV 48
          C G   KQW+C KAG  SLQ+VG +VRD+ EPCLSQS I+VVIT+
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

[Close]

BLAST of Lsi07G003600 vs. TAIR 10
Match: AT2G43490.2 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITV 48
          C G   KQW+C KAG  SLQ+VG +VRD+ EPCLSQS I+VVIT+
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

[Close]

BLAST of Lsi07G003600 vs. TAIR 10
Match: AT2G43490.3 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITV 48
          C G   KQW+C KAG  SLQ+VG +VRD+ EPCLSQS I+VVIT+
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

[Close]

BLAST of Lsi07G003600 vs. TAIR 10
Match: AT2G43490.4 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITV 48
          C G   KQW+C KAG  SLQ+VG +VRD+ EPCLSQS I+VVIT+
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

[Close]

BLAST of Lsi07G003600 vs. TAIR 10
Match: AT2G43490.5 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 3  CGGEADKQWTCAKAGAASLQRVGLIVRDIGEPCLSQSPIKVVITV 48
          C G   KQW+C KAG  SLQ+VG +VRD+ EPCLSQS I+VVIT+
Sbjct: 2  CSGGEGKQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITI 46

The following BLAST results are available for this feature:

BLAST of Lsi07G003600 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G003600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BXB1	8.1e-17	93.88	small G protein signaling modulator 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0KVX5	8.1e-17	93.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G010930 PE=4 SV=1	[more]
A0A1S3BXU1	8.1e-17	93.88	small G protein signaling modulator 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1F2U5	4.0e-16	89.80	small G protein signaling modulator 1-like isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A6J1EXQ4	4.0e-16	89.80	small G protein signaling modulator 1-like isoform X3 OS=Cucurbita moschata OX=3...	[more]

BLAST of Lsi07G003600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152145.1	1.7e-16	93.88	small G protein signaling modulator 1 isoform X10 [Cucumis sativus]	[more]
XP_008454103.1	1.7e-16	93.88	PREDICTED: small G protein signaling modulator 1 isoform X3 [Cucumis melo]	[more]
XP_031739882.1	1.7e-16	93.88	small G protein signaling modulator 1 isoform X4 [Cucumis sativus] >KAE8649087.1...	[more]
XP_008454099.1	1.7e-16	93.88	PREDICTED: small G protein signaling modulator 1 isoform X1 [Cucumis melo] >XP_0...	[more]
XP_023540587.1	8.3e-16	89.80	small G protein signaling modulator 1-like isoform X1 [Cucurbita pepo subsp. pep...	[more]

BLAST of Lsi07G003600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43490.1	2.3e-11	64.44	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G43490.2	2.3e-11	64.44	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G43490.3	2.3e-11	64.44	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G43490.4	2.3e-11	64.44	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G43490.5	2.3e-11	64.44	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G003600.1	Lsi07G003600.1	mRNA