Lsi07G003390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G003390
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor bHLH153-like isoform X1
Locationchr07: 3579414 .. 3583514 (-)
RNA-Seq ExpressionLsi07G003390
SyntenyLsi07G003390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAAAAAGAGCCAAATTTTGATTACAAGATGCAACTTTTAACTGTTTGTTGGTCAAAATGTTCAGTGTGAAAAGCCAAATCCAGATCCTTTTAATTTGGGAATGAATTGCTAAGAAATGAGTGTATTTATTTGTTTAGTTCATGTATATTGCTCTCGTTGTTATTAACCTATTTATCCCATTATAGTATTCCTCTGACCCTACCTTTTTCTTAATTATTATTGTTAATTGTGCTTATTTTTTTTTCAATATTATATTCGATGGAGATCGTCATTAAATTATGGAACTTTTGTCCACTTGTTTTCCTTTTGTCTTTTAGTATTTTGTATTCACATCGATAATTGTTGTTAATGTAGTAGATCAAAATGGATCATTTATACTGGTTTTTTTTAGGTTGTTGGTTTGACCTCTGACCATGACCATGATTGGGTTTTGTTATTAATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGCATCAAAGTAATAATGTTTTGTCCAATCTATGGGGATGCAATTATTTCAAGGCATTTAATTAAAACTTATGAAGGTGTGAGTTCTATTTCTTGGTTGTAATATTCATTTGGTAAAAAAAAAAGGTCGAACAATGTATATTTATATGTAAATACACACCAACACAGGCATTTAAAAATATCCCTGTCTTGAACCTGTGGGAGTATACCTGTGTAGTTTCAGATATTCTCAGTTGACTTTCGTTGTTTGAGATCTTTTATAGATCAAATCTCCTTTTAGAATCTTTGCAATTTCTTTCTTCCCCTTAATAAATTTGCTATATTTTATTACGAAAGGTTAAATTACTAGTTTAATTCTTGAACTTTGAGGTTTGTGTCCATTTGTTTCTATAACTTTCAAAAGTGTCTAATAGGTCCCTATACTTTCAATTTTGTATCTAATAAGTCCTTGAAAATTTTGATTTTTTTAAAATTTTAATTGTTCTATTAGATATAAATTTGAATTTTATGTTTAATAGAACTTGAAATTTTCAATTTTCAATTATGTGTCTAGTACATCTTTGAATTTAAAAAAATTCGAAGGTCAAGGGCTAAATTTATAATTTTGAAAGTTTAGGGACTAAATAGAAACAAATCTCAAGTCAAAGACTAAATATGTTACTTGACCAATATGAAAATATAGTACTCATTCAGACTTACAACAATGGATATTTGTTGCCTATGTTCTTTGCATCTTGATTGATTGAATTTGATCTCTGTTCCAGGCAGAAGTGATGGACGTAGAAACGATGATGGAACCGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTCTCTATCTCCTCTAAGGTTCCTATTGTTGGTTCAACTTCACATAGCAGCATATTGAAGATTAAGTTCCTATAATAATAATAACTAATCAGTGTTAATTGTATATATATATAGTAAGTTTTGGGCGGTCCATTAGACAGGCCTTCTGATCACATTAATTTGGGTGGTCCAATAATATTTCATTATTTTTCACTTGATTAGTCCCTATATCGTCCTGTTTTGTTCTATACGATATGCGCTGCCCCTTCATCCCATGGTTTTCCAAGTAATAATACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAGTTAAATGTTCAAAGGAACCGATCTTTTATATTGAAATTTCTGGATAATATTGAGGGTTTATATGATCTGGGCCAAATTTTATTTTGGCTCTTGAAATCTATAAAGCCATGTTTCGTAATTTTGCTATAAGTATTAAAATCATGGACTGGTTTGAATTATAATTGTACAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTAAGATCTTCTTGCTTAAAGTTTGTGATCTTTTTGAATTCTGATTTGGGTATCAGATATGAATGGCTATCATGCCATGCATATAGCTTTTCTATGGCATGTATAATACCTTTTCCCTCCATAAATTCCTTCTAATTGGTCCAGGGAATATATTTCTTTCTCACTTCCATATTTTTCTTCCGACACTAGTTAGTACTTGCATGCAAAACCTTTTGAGCATCAATCAGTGGCTAAAATTCATTGAATCTTTTTGGTGCAATTTGATATCAGTTTGGTTTATGTCTCTTTCCTTTCATTTTCCTCTATCTCTACTGGACTTTGTTTGCTGAAGTATTCTTCTATGCCTCTTTTAGTTTTTAGGTATTTAGTCATTGTGTGCCTTTCCTCCATCACTTTCTCTCTAATCAGTAATGGAACATGAGCTGCAAGATTGAATCAATTAATAGTTGTGCAACCAGTTATGGTTCTCTCTTCGTATAGACTATGATTGAGTTGTATATATAAGAGAATTTTGGCGACCACAGTTCGTGTAATGTAATCATGTTTGCCTGATTTTCAACCATTGATTTATTTATCATTTAAGTCCATGAAATTGGTGTAGTCTGGATGGTGGAGGACTAGAACAGAGAATTTTATCGACATCCACCAGGATTGATCTTTGACATAGACTGAAAATTTGTCTGCCACCTCCAATGAACTTTATTAAATACTAGTTGTGTATCTGTTTGGCTAGAACTTTCAAGTGTCGTTATATATTCCCTTATGTTATTTTGGCGTGCTTTCAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCTTAGGCTGGACCTTTTGTTTCATGATTTGACCAAAAGTGTGTTTCGTAAACACTTTTTCTTAAAAGAAAAATAAAGCCAACGTCTGTTCCCTCAGGGAAATTTAACAAAGTGTGTTTCTTAAACCTTGACATTTATCTTTGTTAAATCAGTAATCAACTCAAAAGTTTAAAGTTATAGGTTATGTTAAAAATTTTATTATATCAAAATCTAACACTTTCTTCACTTGTGAGCTTGAAAATATATAGAAGGCCCAATATAGGACCAGCTTCGATATCATGTTAAATCACCAGACTAATCAACTCAAAAGTTTCATATAATAGGACGTATTTTTAATCATCAAACTTCTTAGGAGGATAAAATTGTGTGCCATTGAACGTTTTCACTACTTTATATATTGGATTCAAGTCTGACTGATGCTTCAACATCCAGATGTAAATCTTTTTGAATATAATCGCAAGGTTTATATTGGTTTTTTTGTTAGGAGCTGGAGCCATGCAGCCATAGCCTGAGGAGCAGAGGTCTATGTCTTGTTCCAATCTCGTGTACTGCCGGAGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAGTTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGACCATTAAATCATCATCTCTCAGCAGCCAAATGGTTCTGAAGTTTCTACATACGGTTAGTAAAAAAGGTAACTACTTATCTTCTTATCTAATTTATAACAATTTTCCCTCTGGAAGTAGATGAATATTGTATCAAATAATTTAGGCATGGTGCTTGGAAAATGCCATTCTTTTGTTACAAAAGAATAGCCGAGTCTCATCGGATTCCAAGTTATGAATCAATCACCACACCATTCTAGTTTTAACGGGTGAAGGGTATAGTTTATCTCTGTAGTGTATTTGGTGTATTAAATGGTGGAAATGTGTATATTTGTAAACGAATTATATGATGATGATCCCAAATCAGAAATTCATGGTAGAGTAGCATTTGTTACCTGCCTACAAAAGGAGTAGTAGTTTTAATATCTAAGTTATGTTCATGTTGGTGCTTTGTCAGATCTTTTCTTGCCAATACACCGTGGGTATTTTGTGGCTTGGTAGCTGTAACAGCAATAAGATAAGTCGACCTTCAATCTCGAAGGCGTAAATAAGAATATTTTTCTTTGTTAATTGAGTACAATCTTTTTTGGTTGCTTAGTTCCTGTTTGATAACTAATGATTTGTTGCTTTAGTTTTTTAATATTATGCCTATAAACACTCTCTCCACCCCTA

mRNA sequence

ACAAAAAAGAGCCAAATTTTGATTACAAGATGCAACTTTTAACTGTTTGTTGGTCAAAATGTTCAGTGTGAAAAGCCAAATCCAGATCCTTTTAATTTGGGAATGAATTGCTAAGAAATGAGTGTATTTATTTGTTTAGTTCATGTATATTGCTCTCGTTGTTATTAACCTATTTATCCCATTATAGTATTCCTCTGACCCTACCTTTTTCTTAATTATTATTGTTAATTGTGCTTATTTTTTTTTCAATATTATATTCGATGGAGATCGTCATTAAATTATGGAACTTTTGTCCACTTGTTTTCCTTTTGTCTTTTAGTATTTTGTATTCACATCGATAATTGTTGTTAATGTAGTAGATCAAAATGGATCATTTATACTGGTTTTTTTTAGGTTGTTGGTTTGACCTCTGACCATGACCATGATTGGGTTTTGTTATTAATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGCATCAAAGTAATAATGTTTTGTCCAATCTATGGGGATGCAATTATTTCAAGGCATTTAATTAAAACTTATGAAGGTGTGAGTTCTATTTCTTGGTTGTAATATTCATTTGGTAAAAAAAAAAGGTCGAACAATGTATATTTATATGTAAATACACACCAACACAGGCATTTAAAAATATCCCTGTCTTGAACCTGTGGGAGTATACCTGTGTAGTTTCAGATATTCTCAGTTGACTTTCGTTGTTTGAGATCTTTTATAGATCAAATCTCCTTTTAGAATCTTTGCAATTTCTTTCTTCCCCTTAATAAATTTGCTATATTTTATTACGAAAGGCAGAAGTGATGGACGTAGAAACGATGATGGAACCGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGCTGGAGCCATGCAGCCATAGCCTGAGGAGCAGAGGTCTATGTCTTGTTCCAATCTCGTGTACTGCCGGAGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAGTTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGACCATTAAATCATCATCTCTCAGCAGCCAAATGGTTCTGAAGTTTCTACATACGGTTAGTAAAAAAGATCTTTTCTTGCCAATACACCGTGGGTATTTTGTGGCTTGGTAGCTGTAACAGCAATAAGATAAGTCGACCTTCAATCTCGAAGGCGTAAATAAGAATATTTTTCTTTGTTAATTGAGTACAATCTTTTTTGGTTGCTTAGTTCCTGTTTGATAACTAATGATTTGTTGCTTTAGTTTTTTAATATTATGCCTATAAACACTCTCTCCACCCCTA

Coding sequence (CDS)

ATGGACGTAGAAACGATGATGGAACCGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACACAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGCTGGAGCCATGCAGCCATAGCCTGAGGAGCAGAGGTCTATGTCTTGTTCCAATCTCGTGTACTGCCGGAGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAGTTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGA

Protein sequence

MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTVSPKFEKPISPFN
Homology
[Close]
BLAST of Lsi07G003390 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.8e-45
Identity = 98/142 (69.01%), Postives = 115/142 (80.99%), Query Frame = 0 

Query: 2   DVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKT 61
           D   MME KR++CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 62  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTA 121
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 122 GVARSNGADIWAPVKT-VSPKF 143
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]
BLAST of Lsi07G003390 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.5e-40
Identity = 91/135 (67.41%), Postives = 110/135 (81.48%), Query Frame = 0 

Query: 4   ETMMEPKRSLCSVDESALTSLTSKRHK-TDFSISSKERKDKLGERIMALQQLVSPYGKTD 63
           E MME KR++ S++++ +     KRHK +D S SSKERKDKL ERI ALQQLVSPYGKTD
Sbjct: 9   EMMMETKRNVYSLEDNKI-----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTD 68

Query: 64  TASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTAG 123
           TASVLLE M+YIQFL EQVKVLSAPYLQ+TP+   +E+E   +SLRS+GLCLVP+  T+ 
Sbjct: 69  TASVLLEGMQYIQFLQEQVKVLSAPYLQATPSTTEEEVE--EYSLRSKGLCLVPLEYTSE 128

Query: 124 VARSNGADIWAPVKT 138
           VA++NGADIWAPVKT
Sbjct: 129 VAQTNGADIWAPVKT 136

[Close]
BLAST of Lsi07G003390 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.0e-22
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 0 

Query: 17  DESALTSLTSKRHKTDFSIS-SKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQ 76
           D++       KR++   S+  +K RK++LGERI ALQQLVSPYGKTD ASVL EAM YI+
Sbjct: 132 DQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIK 191

Query: 77  FLHEQVKVLSAPYLQSTPT---VLLQELEPC--SHSLRSRGLCLVPISCTAGVARSNGAD 136
           FL +Q++VL +PYL +      V+  ++     +  LRSRGLCLVP+S T  V  SNGAD
Sbjct: 192 FLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGAD 251

Query: 137 IWAPV---KTVSP 141
            W+P     T SP
Sbjct: 252 FWSPATMGHTTSP 264

[Close]
BLAST of Lsi07G003390 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-21
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 0 

Query: 26  SKRHKTDFSISSK--ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 85
           +KR K++ +  S   +RK+K+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV  
Sbjct: 330 AKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSA 389

Query: 86  LSAPYLQSTPTVLLQ------ELEPCSH-SLRSRGLCLVPISCTAGVARSNGADIWAP 135
           LS PY++S  ++  Q      ELE      LRSRGLCLVP+S T  V      D W P
Sbjct: 390 LSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]
BLAST of Lsi07G003390 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-20
Identity = 56/106 (52.83%), Postives = 69/106 (65.09%), Query Frame = 0 

Query: 38  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 97
           K RK+ L ++I +LQQLVSP+GKTDTASVL EA+EYI+FLH+QV VLS PY++   +   
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 339

Query: 98  QEL---------EPCSHSLRSRGLCLVPISCTAGVARSNGADIWAP 135
           Q+          E  +H LR  GLCLVPIS T  VA    AD W P
Sbjct: 340 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385

[Close]
BLAST of Lsi07G003390 vs. ExPASy TrEMBL
Match: A0A5D3CZQ3 (Transcription factor bHLH113-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001780 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 1   MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]
BLAST of Lsi07G003390 vs. ExPASy TrEMBL
Match: A0A1S3BX75 (transcription factor bHLH113-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 1   MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]
BLAST of Lsi07G003390 vs. ExPASy TrEMBL
Match: A0A1S3BYH3 (transcription factor bHLH113-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 64  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 123

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 124 TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 183

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 184 AGVARSNGADIWAPVKTISPKFEKHISPFN 213

[Close]
BLAST of Lsi07G003390 vs. ExPASy TrEMBL
Match: A0A1S4E020 (transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 13  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 72

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 73  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 132

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 133 AGVARSNGADIWAPVKTISPKFEKHISPFN 162

[Close]
BLAST of Lsi07G003390 vs. ExPASy TrEMBL
Match: A0A1S3BYX6 (transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]
BLAST of Lsi07G003390 vs. NCBI nr
Match: XP_038906434.1 (transcription factor bHLH153-like isoform X1 [Benincasa hispida])

HSP 1 Score: 287.0 bits (733), Expect = 9.6e-74
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MDVETMME KRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MDVETMMEQKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPK+EKPISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKYEKPISPFN 167

[Close]
BLAST of Lsi07G003390 vs. NCBI nr
Match: XP_038906435.1 (transcription factor bHLH153-like isoform X2 [Benincasa hispida])

HSP 1 Score: 287.0 bits (733), Expect = 9.6e-74
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           MDVETMME KRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 6   MDVETMMEQKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 65

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 66  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 125

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPK+EKPISPFN
Sbjct: 126 AGVARSNGADIWAPVKTISPKYEKPISPFN 155

[Close]
BLAST of Lsi07G003390 vs. NCBI nr
Match: XP_008454046.1 (PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo] >KAA0044549.1 transcription factor bHLH113-like isoform X2 [Cucumis melo var. makuwa] >TYK17032.1 transcription factor bHLH113-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 281.2 bits (718), Expect = 5.3e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 1   MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 120

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 121 AGVARSNGADIWAPVKTISPKFEKHISPFN 150

[Close]
BLAST of Lsi07G003390 vs. NCBI nr
Match: XP_016901571.1 (PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 5.3e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 13  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 72

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 73  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 132

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 133 AGVARSNGADIWAPVKTISPKFEKHISPFN 162

[Close]
BLAST of Lsi07G003390 vs. NCBI nr
Match: XP_008454045.1 (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 281.2 bits (718), Expect = 5.3e-72
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 0 

Query: 1   MDVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 60
           M+VETMME KRSLCSVDESALTSLT KRHKTDFSISSKERKDKLGERIMALQQLVSPYGK
Sbjct: 18  MEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDKLGERIMALQQLVSPYGK 77

Query: 61  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCT 120
           TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+EPCSHSLRSRGLCLVPISCT
Sbjct: 78  TDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPCSHSLRSRGLCLVPISCT 137

Query: 121 AGVARSNGADIWAPVKTVSPKFEKPISPFN 151
           AGVARSNGADIWAPVKT+SPKFEK ISPFN
Sbjct: 138 AGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]
BLAST of Lsi07G003390 vs. TAIR 10
Match: AT1G05710.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 181.0 bits (458), Expect = 6.9e-46
Identity = 98/142 (69.01%), Postives = 115/142 (80.99%), Query Frame = 0 

Query: 2   DVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKT 61
           D   MME KR++CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 62  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTA 121
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 122 GVARSNGADIWAPVKT-VSPKF 143
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]
BLAST of Lsi07G003390 vs. TAIR 10
Match: AT1G05710.4 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 181.0 bits (458), Expect = 6.9e-46
Identity = 98/142 (69.01%), Postives = 115/142 (80.99%), Query Frame = 0 

Query: 2   DVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKT 61
           D   MME KR++CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 62  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTA 121
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 122 GVARSNGADIWAPVKT-VSPKF 143
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]
BLAST of Lsi07G003390 vs. TAIR 10
Match: AT1G05710.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 181.0 bits (458), Expect = 6.9e-46
Identity = 98/142 (69.01%), Postives = 115/142 (80.99%), Query Frame = 0 

Query: 2   DVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKT 61
           D   MME KR++CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 62  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTA 121
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 122 GVARSNGADIWAPVKT-VSPKF 143
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]
BLAST of Lsi07G003390 vs. TAIR 10
Match: AT1G05710.5 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 181.0 bits (458), Expect = 6.9e-46
Identity = 98/142 (69.01%), Postives = 115/142 (80.99%), Query Frame = 0 

Query: 2   DVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKT 61
           D   MME KR++CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 62  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEPCSHSLRSRGLCLVPISCTA 121
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 122 GVARSNGADIWAPVKT-VSPKF 143
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]
BLAST of Lsi07G003390 vs. TAIR 10
Match: AT1G05710.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 168.3 bits (425), Expect = 4.7e-42
Identity = 98/164 (59.76%), Postives = 115/164 (70.12%), Query Frame = 0 

Query: 2   DVETMMEPKRSLCSVDESALTSLTSKRHKTDFSISSKERKDKLGERIMALQQLVSPYGKT 61
           D   MME KR++CS+ ES++     KRHK+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 62  DTASVLLEAMEYIQFLHEQVK----------------------VLSAPYLQSTPTVLLQE 121
           DTASVLL+AM YI+FLHEQVK                      VLSAPYLQ+ P    +E
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVCSSIPSMIHSSLSEFPCSFVQVLSAPYLQTVPDATQEE 125

Query: 122 LEPCSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKT-VSPKF 143
           LE   +SLR+RGLCLVP+  T GVA+SNGADIWAPVKT +SP F
Sbjct: 126 LE--QYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKTPLSPAF 162

The following BLAST results are available for this feature:
BLAST of Lsi07G003390 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7XJU29.8e-4569.01Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=... [more]
Q7XJU15.5e-4067.41Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=... [more]
Q9LT674.0e-2249.62Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=... [more]
Q8GXT34.4e-2151.69Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=... [more]
Q94JL32.9e-2052.83Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=... [more]
BLAST of Lsi07G003390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CZQ32.6e-7296.00Transcription factor bHLH113-like isoform X2 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3BX752.6e-7296.00transcription factor bHLH113-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
A0A1S3BYH32.6e-7296.00transcription factor bHLH113-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
A0A1S4E0202.6e-7296.00transcription factor bHLH113-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
A0A1S3BYX62.6e-7296.00transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
BLAST of Lsi07G003390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906434.19.6e-7497.33transcription factor bHLH153-like isoform X1 [Benincasa hispida][more]
XP_038906435.19.6e-7497.33transcription factor bHLH153-like isoform X2 [Benincasa hispida][more]
XP_008454046.15.3e-7296.00PREDICTED: transcription factor bHLH113-like isoform X4 [Cucumis melo] >KAA00445... [more]
XP_016901571.15.3e-7296.00PREDICTED: transcription factor bHLH113-like isoform X3 [Cucumis melo][more]
XP_008454045.15.3e-7296.00PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo][more]
BLAST of Lsi07G003390 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G05710.16.9e-4669.01basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT1G05710.46.9e-4669.01basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT1G05710.36.9e-4669.01basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT1G05710.56.9e-4669.01basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT1G05710.24.7e-4259.76basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 36..83
e-value: 4.3E-4
score: 29.6
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 28..77
score: 11.693202
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 25..94
e-value: 8.6E-9
score: 37.4
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 30..91
NoneNo IPR availablePANTHERPTHR16223:SF224TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1coord: 2..134
NoneNo IPR availablePANTHERPTHR16223TRANSCRIPTION FACTOR BHLH83-RELATEDcoord: 2..134
NoneNo IPR availableCDDcd11393bHLH_AtbHLH_likecoord: 34..85
e-value: 2.57083E-23
score: 84.5403

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G003390.1Lsi07G003390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding