Lsi07G003290 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G003290
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr07: 3484238 .. 3485101 (+)
RNA-Seq Expression	Lsi07G003290
Synteny	Lsi07G003290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCATTCTCATCGCATCAATATATTTTGAGCCCTTTTGAGTTCGTGTGTGTAAATTGGTTTTAATCTCCCACCTCCACCAGGCTCGCATTAGTCCCAACCAACTTTATTTTTCCACAATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAACCGAGGTTCCCGCCACACCCACAGACAATAAGCCCCAGCCCCAGCCAGCTGAGACCATTTCCCAGGTAATTTAATTTAATTAAAATCTACATTTATGCAAATATTCATGAGATCATTGATCAGTTCCGTCCAGCTAATTCACATTATAATATTATGCTTTGCTTTTAGGGAAATAATGATGGAGGTGAGAGTGCATCAACAACATTGGTGGACCTGTCCGAGTCCAACGAACCAAAACAGGACGAAGCTGGTGGAGATGTTGAGCCCGAGCCCGCCCCTGTAGTTCCTAATGATCATAAATCAACTACTCCCGACGTTACCCATGCCGAGAAAGTCGAAGCCATTGCAAAAGAATCAGAGGACAAGAGTGAGGCTATTGTCGGCCGGAACACCCAGACCAAGGAGGGCCACCCTAGGACGACTGGTGCCGACGCTGCCAAATCAGATGCCACTCCAACTCCAACCTCTGAACAGTACAAAACCATGGCACCCATTGATGTAGCGATCTAACCCATACTTTTCATTTATTTTTATATACATTCAACTCATCCATATATCTATCAACTTCCATCTATCTTTCTATTCATTTCTCCAAATCAGCCAACAATTCTTAATTATATATATTATTCATCCTCTTCTAATTATTAATTAACTTTAATTGTTCTAATTACGTAATAAACTACATCTTTTTATTTTTCTC

mRNA sequence

GATCATTCTCATCGCATCAATATATTTTGAGCCCTTTTGAGTTCGTGTGTGTAAATTGGTTTTAATCTCCCACCTCCACCAGGCTCGCATTAGTCCCAACCAACTTTATTTTTCCACAATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAACCGAGGTTCCCGCCACACCCACAGACAATAAGCCCCAGCCCCAGCCAGCTGAGACCATTTCCCAGGGAAATAATGATGGAGGTGAGAGTGCATCAACAACATTGGTGGACCTGTCCGAGTCCAACGAACCAAAACAGGACGAAGCTGGTGGAGATGTTGAGCCCGAGCCCGCCCCTGTAGTTCCTAATGATCATAAATCAACTACTCCCGACGTTACCCATGCCGAGAAAGTCGAAGCCATTGCAAAAGAATCAGAGGACAAGAGTGAGGCTATTGTCGGCCGGAACACCCAGACCAAGGAGGGCCACCCTAGGACGACTGGTGCCGACGCTGCCAAATCAGATGCCACTCCAACTCCAACCTCTGAACAGTACAAAACCATGGCACCCATTGATGTAGCGATCTAACCCATACTTTTCATTTATTTTTATATACATTCAACTCATCCATATATCTATCAACTTCCATCTATCTTTCTATTCATTTCTCCAAATCAGCCAACAATTCTTAATTATATATATTATTCATCCTCTTCTAATTATTAATTAACTTTAATTGTTCTAATTACGTAATAAACTACATCTTTTTATTTTTCTC

Coding sequence (CDS)

ATGGGAGGTTGTGCGAGCAAACCCAAGGGTATGGATCTCCACCCAACCGAGGTTCCCGCCACACCCACAGACAATAAGCCCCAGCCCCAGCCAGCTGAGACCATTTCCCAGGGAAATAATGATGGAGGTGAGAGTGCATCAACAACATTGGTGGACCTGTCCGAGTCCAACGAACCAAAACAGGACGAAGCTGGTGGAGATGTTGAGCCCGAGCCCGCCCCTGTAGTTCCTAATGATCATAAATCAACTACTCCCGACGTTACCCATGCCGAGAAAGTCGAAGCCATTGCAAAAGAATCAGAGGACAAGAGTGAGGCTATTGTCGGCCGGAACACCCAGACCAAGGAGGGCCACCCTAGGACGACTGGTGCCGACGCTGCCAAATCAGATGCCACTCCAACTCCAACCTCTGAACAGTACAAAACCATGGCACCCATTGATGTAGCGATCTAA

Protein sequence

MGGCASKPKGMDLHPTEVPATPTDNKPQPQPAETISQGNNDGGESASTTLVDLSESNEPKQDEAGGDVEPEPAPVVPNDHKSTTPDVTHAEKVEAIAKESEDKSEAIVGRNTQTKEGHPRTTGADAAKSDATPTPTSEQYKTMAPIDVAI

Homology

[Close]

BLAST of Lsi07G003290 vs. ExPASy TrEMBL
Match: A0A5D3BYJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00110 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 122/155 (78.71%), Postives = 135/155 (87.10%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPATPTDNKPQPQ----PAETISQGNNDGGESASTTLVDLSES 60
           MGGCASKPKGMDLHPTEVP TPT N+PQPQ      ETI+QGNNDGGE+ASTTLVDLS+S
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPT-NEPQPQSQPKATETITQGNNDGGENASTTLVDLSKS 60

Query: 61  NEPKQDEAGGDVEPEPAPVVPNDHKSTTPDVTHAEKVEAIAKESEDKSEAIVGRNTQTKE 120
            EPKQDEA GDV+ + AP VPN  KSTTP++TH EKVE IAKE+EDK+EAIV +NTQTKE
Sbjct: 61  FEPKQDEAVGDVKLKSAPGVPNYDKSTTPNLTHDEKVEGIAKETEDKNEAIV-QNTQTKE 120

Query: 121 GHPRTT-GADAAKSDATPTPTSEQYKTMAPIDVAI 151
           GHPRTT GADAAKSDATPTPTSE +KTMAP+DVAI
Sbjct: 121 GHPRTTFGADAAKSDATPTPTSE-HKTMAPLDVAI 152

[Close]

BLAST of Lsi07G003290 vs. ExPASy TrEMBL
Match: A0A5A7UQQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001770 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.3e-49
Identity = 121/155 (78.06%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPATPTDNKPQPQ----PAETISQGNNDGGESASTTLVDLSES 60
           MGGCASKPKGMDLHPTEVP TPT N+PQPQ      ETI+QGNNDGGE+ASTTLVDLS+S
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPT-NEPQPQSQPKATETITQGNNDGGENASTTLVDLSKS 60

Query: 61  NEPKQDEAGGDVEPEPAPVVPNDHKSTTPDVTHAEKVEAIAKESEDKSEAIVGRNTQTKE 120
            EPKQDEA GDV+ + AP V N  KSTTP++TH EKVE IAKE+EDK+EAIV +NTQTKE
Sbjct: 61  FEPKQDEAVGDVKLKSAPRVSNYDKSTTPNLTHDEKVEGIAKETEDKNEAIV-QNTQTKE 120

Query: 121 GHPRTT-GADAAKSDATPTPTSEQYKTMAPIDVAI 151
           GHPRTT GADAAKSDATPTPTSE +KTMAP+DVAI
Sbjct: 121 GHPRTTFGADAAKSDATPTPTSE-HKTMAPLDVAI 152

[Close]

BLAST of Lsi07G003290 vs. ExPASy TrEMBL
Match: A0A0A0KVU8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G120780 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 9.8e-48
Identity = 118/151 (78.15%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPATPTDNKPQPQPAETISQGNNDGGESASTTLVDLSESNEPK 60
           MGGCASKPKGMDLHP+EV ATPT NKPQ Q  E ++QGNNDGG+SASTTLVDLS+SNE K
Sbjct: 1   MGGCASKPKGMDLHPSEVSATPT-NKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETK 60

Query: 61  QDEAGGDVEPEPAPVVPNDHKSTTPDVTHAEKVEAIAKESEDKSEAIVGRNTQTKEGHPR 120
           QD+AGGDVE EPA  VPN  KST  ++T AEKVE IAKESEDKSEAIV +NTQTKEGHPR
Sbjct: 61  QDKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIV-KNTQTKEGHPR 120

Query: 121 -TTGADAAKSDATPTPTSEQYKTMAPIDVAI 151
            T GADAAK DATPTPTSE  K MAP+DVAI
Sbjct: 121 MTIGADAAKLDATPTPTSEP-KNMAPLDVAI 148

[Close]

BLAST of Lsi07G003290 vs. NCBI nr
Match: XP_038875809.1 (uncharacterized protein LOC120068172 [Benincasa hispida])

HSP 1 Score: 233.4 bits (594), Expect = 1.3e-57
Identity = 129/150 (86.00%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPATPTDNKPQPQPAETISQGNNDGGESASTTLVDLSESNEPK 60
           MGGCASKPKGMDLHP EVPATPTD KPQPQ AETISQGNNDGGESASTTLVDLSESNEPK
Sbjct: 1   MGGCASKPKGMDLHPNEVPATPTD-KPQPQAAETISQGNNDGGESASTTLVDLSESNEPK 60

Query: 61  QDEAGGDVEPEPAPVVPNDHKSTTPDVTHAEKVEAIAKESEDKSEAIVGRNTQTKEGHPR 120
           QDEAGGDVEPEPAP VPN HKSTTP++TH EKVEAIAKESED        N QTKEGHPR
Sbjct: 61  QDEAGGDVEPEPAPGVPNYHKSTTPELTHVEKVEAIAKESED--------NIQTKEGHPR 120

Query: 121 TTGADAAKSDATPTPTSEQYKTMAPIDVAI 151
           TT ADAAKSDATPTPTSE +KTMAP+DVAI
Sbjct: 121 TTSADAAKSDATPTPTSE-HKTMAPVDVAI 140

[Close]

BLAST of Lsi07G003290 vs. NCBI nr
Match: TYK04607.1 (uncharacterized protein E5676_scaffold351G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 5.7e-50
Identity = 122/155 (78.71%), Postives = 135/155 (87.10%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPATPTDNKPQPQ----PAETISQGNNDGGESASTTLVDLSES 60
           MGGCASKPKGMDLHPTEVP TPT N+PQPQ      ETI+QGNNDGGE+ASTTLVDLS+S
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPT-NEPQPQSQPKATETITQGNNDGGENASTTLVDLSKS 60

Query: 61  NEPKQDEAGGDVEPEPAPVVPNDHKSTTPDVTHAEKVEAIAKESEDKSEAIVGRNTQTKE 120
            EPKQDEA GDV+ + AP VPN  KSTTP++TH EKVE IAKE+EDK+EAIV +NTQTKE
Sbjct: 61  FEPKQDEAVGDVKLKSAPGVPNYDKSTTPNLTHDEKVEGIAKETEDKNEAIV-QNTQTKE 120

Query: 121 GHPRTT-GADAAKSDATPTPTSEQYKTMAPIDVAI 151
           GHPRTT GADAAKSDATPTPTSE +KTMAP+DVAI
Sbjct: 121 GHPRTTFGADAAKSDATPTPTSE-HKTMAPLDVAI 152

[Close]

BLAST of Lsi07G003290 vs. NCBI nr
Match: KAA0056646.1 (uncharacterized protein E6C27_scaffold288G001770 [Cucumis melo var. makuwa])

HSP 1 Score: 204.9 bits (520), Expect = 4.8e-49
Identity = 121/155 (78.06%), Postives = 134/155 (86.45%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPATPTDNKPQPQ----PAETISQGNNDGGESASTTLVDLSES 60
           MGGCASKPKGMDLHPTEVP TPT N+PQPQ      ETI+QGNNDGGE+ASTTLVDLS+S
Sbjct: 1   MGGCASKPKGMDLHPTEVPTTPT-NEPQPQSQPKATETITQGNNDGGENASTTLVDLSKS 60

Query: 61  NEPKQDEAGGDVEPEPAPVVPNDHKSTTPDVTHAEKVEAIAKESEDKSEAIVGRNTQTKE 120
            EPKQDEA GDV+ + AP V N  KSTTP++TH EKVE IAKE+EDK+EAIV +NTQTKE
Sbjct: 61  FEPKQDEAVGDVKLKSAPRVSNYDKSTTPNLTHDEKVEGIAKETEDKNEAIV-QNTQTKE 120

Query: 121 GHPRTT-GADAAKSDATPTPTSEQYKTMAPIDVAI 151
           GHPRTT GADAAKSDATPTPTSE +KTMAP+DVAI
Sbjct: 121 GHPRTTFGADAAKSDATPTPTSE-HKTMAPLDVAI 152

[Close]

BLAST of Lsi07G003290 vs. NCBI nr
Match: XP_011653400.1 (uncharacterized protein LOC105435210 [Cucumis sativus] >KGN53750.1 hypothetical protein Csa_014628 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-47
Identity = 118/151 (78.15%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MGGCASKPKGMDLHPTEVPATPTDNKPQPQPAETISQGNNDGGESASTTLVDLSESNEPK 60
           MGGCASKPKGMDLHP+EV ATPT NKPQ Q  E ++QGNNDGG+SASTTLVDLS+SNE K
Sbjct: 1   MGGCASKPKGMDLHPSEVSATPT-NKPQTQATEIVTQGNNDGGKSASTTLVDLSKSNETK 60

Query: 61  QDEAGGDVEPEPAPVVPNDHKSTTPDVTHAEKVEAIAKESEDKSEAIVGRNTQTKEGHPR 120
           QD+AGGDVE EPA  VPN  KST  ++T AEKVE IAKESEDKSEAIV +NTQTKEGHPR
Sbjct: 61  QDKAGGDVELEPASGVPNYDKSTALNLTQAEKVEGIAKESEDKSEAIV-KNTQTKEGHPR 120

Query: 121 -TTGADAAKSDATPTPTSEQYKTMAPIDVAI 151
            T GADAAK DATPTPTSE  K MAP+DVAI
Sbjct: 121 MTIGADAAKLDATPTPTSEP-KNMAPLDVAI 148

The following BLAST results are available for this feature:

BLAST of Lsi07G003290 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G003290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYJ6	2.8e-50	78.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UQQ8	2.3e-49	78.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KVU8	9.8e-48	78.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G120780 PE=4 SV=1	[more]

BLAST of Lsi07G003290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875809.1	1.3e-57	86.00	uncharacterized protein LOC120068172 [Benincasa hispida]	[more]
TYK04607.1	5.7e-50	78.71	uncharacterized protein E5676_scaffold351G00110 [Cucumis melo var. makuwa]	[more]
KAA0056646.1	4.8e-49	78.06	uncharacterized protein E6C27_scaffold288G001770 [Cucumis melo var. makuwa]	[more]
XP_011653400.1	2.0e-47	78.15	uncharacterized protein LOC105435210 [Cucumis sativus] >KGN53750.1 hypothetical ...	[more]

BLAST of Lsi07G003290 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G003290.1	Lsi07G003290.1	mRNA