Lsi07G003030 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G003030
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr07: 3256247 .. 3256871 (-)
RNA-Seq Expression	Lsi07G003030
Synteny	Lsi07G003030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTATGGGCAGAGAGGCGAACACGGCGGTCTCTTGGACCTTTGGCTGTACAAACTTTGCTGTGACGATCTTTTCTTCCAGTGGAACGAACAATGTGGCCTCCTTGAACCTCCACAATCTCCCCGCCGCCGCCGCCGGTTCTCATCCCCAACCTTGACGACGTCGATGTTTGGCGGTGGCTCTCTCCCATTTTTCTCGCATATTCGATGCTCTGGTCGGCGTAGGCGGAAGCAGAGGCGGCAGGAGCCGCCACCGGATGAGGAGGAGGAAGCTGAAAGTAAGAACGTTTTTTGGGGGCTTGCTGCTGGTGGGGTTGCTGTTGTTGCTGTTGTGTCTGTGAATCTAAAACTGCGTAGTAATTGTGTAGATTTTGGTGTTCTTGGTGAGTGTTTTGAAGAAAAAGATGCTGATTCTGGTGCACATTGAAAGGCTGTGGTTGCTGCTGAGGGTGGTGGTGGTGGTCTTGGCGGTGGTGGGGCGGAGAATCTTGGTCTTCTTCCTCTGCTTTTCCTTCTACATGCCTCGAAATTAGAATCTGGTTTTGATGATGATGACGGCGATTTCCTTGAGGATCCAGACTCGGATTGTTTTGCTTTTCTTCTTCCAGCTTTAAACGGGTAG

mRNA sequence

ATGGCGTGGAACGAACAATGTGGCCTCCTTGAACCTCCACAATCTCCCCGCCGCCGCCGCCGGTTCTCATCCCCAACCTTGACGACGTCGATGTTTGGCGGTGGCTCTCTCCCATTTTTCTCGCATATTCGATGCTCTGGTCGGCGTAGGCGGAAGCAGAGGCGGCAGGAGCCGCCACCGGATGAGGAGGAGGAAGCTGAAAGTAAGAACGCTGTGGTTGCTGCTGAGGGTGGTGGTGGTGGTCTTGGCGGTGGTGGGGCGGAGAATCTTGGTCTTCTTCCTCTGCTTTTCCTTCTACATGCCTCGAAATTAGAATCTGGTTTTGATGATGATGACGGCGATTTCCTTGAGGATCCAGACTCGGATTGTTTTGCTTTTCTTCTTCCAGCTTTAAACGGGTAG

Coding sequence (CDS)

ATGGCGTGGAACGAACAATGTGGCCTCCTTGAACCTCCACAATCTCCCCGCCGCCGCCGCCGGTTCTCATCCCCAACCTTGACGACGTCGATGTTTGGCGGTGGCTCTCTCCCATTTTTCTCGCATATTCGATGCTCTGGTCGGCGTAGGCGGAAGCAGAGGCGGCAGGAGCCGCCACCGGATGAGGAGGAGGAAGCTGAAAGTAAGAACGCTGTGGTTGCTGCTGAGGGTGGTGGTGGTGGTCTTGGCGGTGGTGGGGCGGAGAATCTTGGTCTTCTTCCTCTGCTTTTCCTTCTACATGCCTCGAAATTAGAATCTGGTTTTGATGATGATGACGGCGATTTCCTTGAGGATCCAGACTCGGATTGTTTTGCTTTTCTTCTTCCAGCTTTAAACGGGTAG

Protein sequence

MAWNEQCGLLEPPQSPRRRRRFSSPTLTTSMFGGGSLPFFSHIRCSGRRRRKQRRQEPPPDEEEEAESKNAVVAAEGGGGGLGGGGAENLGLLPLLFLLHASKLESGFDDDDGDFLEDPDSDCFAFLLPALNG

Homology

The following BLAST results are available for this feature:

BLAST of Lsi07G003030 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G003030 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G003030 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G003030 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G003030.1	Lsi07G003030.1	mRNA