Lsi07G002400 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G002400
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionType I restriction-modification systemmethyltransferase subunit
Locationchr07: 2644143 .. 2648694 (-)
RNA-Seq ExpressionLsi07G002400
SyntenyLsi07G002400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTCATAAATATCTATATCAACTCTCTTCATCTATCTTTTATTTTCTTTTTTATTTGTTACTTTACTTGTTTTTTTTTTTTTTTTGATGGTAAATGAGTTGTTTTATTTATTATGAGCTCTACGTTTCGTACTTATCTTTGGTTGATGATGAGTATTTCATCTATTCAGCTAGATTTTTTTAGTTTTTCTTGAAGTTTTTGGAATTTTTTTTTAATTTTCTTTTTTACCCCTTTATTGTTCATTCGTTGAAATTTACAGTGGGACTAGTATTCAATTGAACTTAAAAAATAATATCTTGCATTTTGAAGGTTCATTTTTAAAGGTAATCAATGGCATGGTTGTTGATTACTGAATAAAAAATGGAGTGGAATTTTTTAATATTTTTAAATAGTTTTGCTATTTTTTTTTATATTTGAAAATGATTTTTTTACTCAAAATAATTAAACAAATAATATAATTTTGGAAAATTTTTATGGATAAAAAAAAGTTAAAATTATTTACAGAAAATAGTGAAAAAAAAATATTGATAAGACATCAATAGAGTTTTAATAGTATTTAAGTATTTATCATTTTCAATAAGACATTAATAGAATTCTAATATTATTTATCATTTCTATACGTGGATAGATTTTTTTAAAAAAAAGATAACTTCTTTTAGTATAATGATAGATTTCTGTCCAGAAAAATAGGTTTTTTTTTATTTTATTTTTTATTTTTAAAAATTCCTCATAATTTTATATTGTGAATACATTTTTATCGACTTTTGAGGATTTAAATTTATAATTTGTGTGATTAAAATTGGATATAAACTGAACGAACTTCAAATTTTTATTTTTTTTTTNTACAAGGGAATAGACTGTGGCATCCAGCTTATATATATATCGAAGCGTCTTATATAATGCCACATATCATTAAATAATTTGGTGGGTTATGGTTGTGTGTATTATGTAATAATTTGTGCGTTGAGTGGTTAGATCAATGTTTCTTATAATGTATGTCATAAATATCTATATCAACTCTCTTCATCTATCTTTTATTTTCTTTTTTATTTGTTACTTTACTTGTTTTTTTTTTTTTTTGGATGGTAAATGAGTTGTTTTATTTATTATGAGCTCTACGTTTCGTACTTATCTTTGGTTGATGATGAGTATTTCATCTATTCAGCTAGATTTTTTTAGTTTTTCTTGAAGTTTTTGGAATTTTTTTTTAATTTTCTTTTTTACCCCTTTATTGTTCATTCGTTGAAATTTACAGTGGGACTAGTATTCAATTGAACTTAAAAAATAATATCTTGCATTTTGAAGGTTCATTTTTAAAGGTAATCAATGGCATGGTTGTTGATTACTGAATAAAAAATGGAGTGGAATTTTTTAATATTTTTAAATAGTTTTGCTATTTTTTTTTATATTTGAAAATGATTTTTTTACTCAAAATAATTAAACAAATAATATAATTTTGGAAAATTTTTATGGATAAAAAAAAGTTAAAATTATTTACAGAAAATAGTGAAAAAAAAATATTGATAAGACATCAATAGAGTTTTAATAGTATTTAAGTATTTATCATTTTCAATAAGACATTAATAGAATTCTAATATTATTTATCATTTCTATACGTGGATAGATTTTTTTAAAAAAAAGATAACTTCTTTTAGTATAATGATAGATTTCTGTCCAGAAAAATAGGTTTTTTTTTATTTTATTTTTTATTTTTAAAAATTCCTCATAATTTTATATTGTGAATACATTTTTATCGACTTTTGAGGATTTAAATTTATAATTTGTGTGATTAAAATTGGATATAAACTGAACGAACTTCAAATTTTTATTTTTTTTTTCAAAAAGAGGTATTTTAGTCTTTTAAGTTTTCTCTAAAGAGCACATACATTTAATTGGCACATATGGGACAAGGACAGGACTACAAATTGTATTTTTTTAATAGAAGTTTTTAAACTTCAAAGTTCTCTTTCTTTATATTTAATTTTCAAATATTTAATTATCTTACCTATTCAATTTTGACATTAAAATCTCTTAATCTAATATTCAAAGAATATTTGCAATTGAATTACTCATAAAAAAATAATATTTGTGATTGTTATTGTTTGGTAGCTATTTAGTTATTGAAAGTCCAAAGAGTCCTTTTAAAATCAAAGTTAAATTTTGGAGGGAAAAAATGTATTTTTAAAAAAATTGTTGGCCAAGAATTTGAAAATGAGAAAATAAGCATAATTTTTAATAACTAAAAATTAAGACAAAATTGGCCTGTTCGGCAAAATTGCTCTCTCTCCTATGAATGAAATTAAGGCTAATTCTTCATCATGTAACAAAAAGAAAGCTAATACTACAGGTTTTGTGTGAGTACAAGCACGAAGGAACACAAAGTAACAGAACAAAATATAGCTTGATATGGTCCACCTTTAAGCCTTTGAAGCCTTTCGTCCGTTTTTGGATGTCCCGTTACCGAGTAAAAACTATCCAGGCCGCCATGAATCAAAGATTCAACATAACCATAGTTTATAATTTACTATACACTACGTTAGATTGGCGGGCTTCCATCTCCGTTCTTTCAGAATCATGGCTTCTTCATCATTTGCTGTTGATACTCACCACAGTGCACAAGGCAGAGTGCTCCTCAACTATGGTTTTCTTCCACCAAGGAATCAGCCAAGAAGGAATCAGTTGAGAATGAGAAGACTGTTAATGAGAAAACAGGATCACCAAAAGTTACCACAAGAACAAGTCCCGTTGTGGAAGTGATGAAATCTCATGTTATCCCTTATAATGATCTCCCTTCCAGTGATCTCAGATGCAGCACACATGACATTGTGGCAATCCTCGCATATCCTAAGGTTTTTCATGATCTTAATGGTATCACCAGCATCAGTACATAGCAATCCATATGCCAATGCAAGCTTTTCACTATGACTCATCAGTATTCGCTCCTTTTCATCATCACTCATATCATAAGGCACAGATCTCAAGTTTGGCTTGTATCCATGGGCTCTTAATCTTTCAAGGAGTTGCTTCAAGGCTTCTCTAATCTCACCTGATCGTGGATGGGTTGTATCACTAGCAAAGAACTCGTGAATTTCCCCCTTCTTTCCTTCAAACCAGCTGCAGCCAGGATTCTTTTTTAAGCCTTTTTCTCTAATCACTTTCCTCAATTTCGATACTTCTTCCCACCTTCCTGCTGATGCATATATGTTTGATAGCAGAATGTAGTTCCCTATACCATCTGGTTCGAGCTCGAATAGTTGGTTTGCAGCTATTTGAGCAATGTCAGGATTCCCATGGATGCGGCAAGCTCCAAGCAGTGCTCCCCATACACCTCCGTGGGGTTCCATTGACATGGTTTCGATGAGCTCGAGTGCTTCTTCTAAACATCCAGCTCGACCAAGGAGATCTACCATACATGCATAGTGATCAGGTGAAGGAGCAACACTAAAATACTTCTCCATCTTAGCGAATAGCTGCCGACCTTGTTCAACCAAACCGGCATGGCTGCAGGCTGAAAGCACCCCAATAAAAGTAACCTTATTCGGTCTGATTTCTGTCTTTAACATCTCATGGAACAACTGCAAAGCTGAATGAGCACGACCATGCATTGCATATCCCGCAATCATTGAACTATAAGAAAACACATTTCTTTCCTTCATTACTTCAAAAACCTTATATGCCTCATCAGGACTGCCACATTTAGAGTACATATCAATAAGAGCAGATCCCACGACTACATTTTCAGAAGGTCCAAAACCTGATTTTTCAGCAATGTCTCTAATCCAGTTAGCATATTTAACTGCACCCAACTGTGCACAGGCCGAGATGACACCAACCAGTGTAACTTCATCGGTGTCCATACCTACGTCCTGCATTTTTTGAAAATACTCCAATGCCTCCTTTGGTCTAGCATTTTGGGCATAACCAGTGACCATTGCCGTCCATGCCACCATATCCTTCAAAGGCAATTCATCAAACAGGTCACCAGCAGATTCCATATCCCCAAACTTCGCATACGCAACAATCAGCTCAGTCCAAGAAACCACATCTCTCTCAGACATTTCATCGAACACCTTCCGCCCACAACCCAAGAACCCACATTTCACATACATATCAATCATCGTATTACCAACATACAAATCAGAAGCAAATCCCCCAATCAAAATCGTGTGGGCGTGCACCTGCTTACCCAAATCCAGATTAAGAACAGCCCCACAAGCTTTAAAAAGCGCCGAAAACGTAAACGAAACAGGACTGACGCCATCCCTCCTCATTCTCGTATACAAGTTAATAGATTCAGACAAGGGTCCTTGAAGCGCATACCCACGAATCATGGCAGTCCAAAGAAAGGGGTTGGGGTATTTAACCTGTCCAAAAACCAGACGTGGGTAGGAATCCATCGGGACATCTACCCTCGTGAGCATGCGGATGAGTTTGGTGAGGACGTAAGAGCATTGACTCAATCCGTTGCGGACGATATGGCCGTGGACTTGCTTGATTTGAGAAAAGACCGTGCAGTCGTGAAGAATACTTATAAGTCGCCATTCTAA

mRNA sequence

ATGTATTGCACAAGGCAGAGTGCTCCTCAACTATGGTTTTCTTCCACCAAGGAATCAGCCAAGAAGGAATCAGTTGAGAATGAGAAGACTGTTAATGAGAAAACAGGATCACCAAAAGTTACCACAAGAACAAGTCCCGTTGTGGAAGTGATGAAATCTCATGTTATCCCTTATAATGATCTCCCTTCCAGTGATCTCAGATGCAGCACACATGACATTGTGGCAATCCTCGCATATCCTAAGCATCAGTACATAGCAATCCATATGCCAATGCAAGCTTTTCACTATGACTCATCAGTATTCGCTCCTTTTCATCATCACTCATATCATAAGGCACAGATCTCAAGATTCCCATGGATGCGGCAAGCTCCAAGCAGTGCTCCCCATACACCTCCGTGGGGTTCCATTGACATGGTTTCGATGAGCTCGATTAGCATATTTAACTGCACCCAACTGTGCACAGGCCGAGATGACACCAACCAGTGTAACTTCATCGGTGTCCATACCTACGTCCTGCATTTTTTGAAAATACTCCAATGCCTCCTTTGGTCTAGCATTTTGGGCATAACCAGTGACCATTGCCGTCCATGCCACCATATCCTTCAAAGGCAATTCATCAAACAGGTCACCAGCAGATTCCATATCCCCAAACTTCGCATACGCAACAATCAGCTCAGTCCAAGAAACCACATCTCTCTCAGACATTTCATCGAACACCTTCCGCCCACAACCCAAGAACCCACATTTCACATACATATCAATCATCGTATTACCAACATACAAATCAGAAGCAAATCCCCCAATCAAAATCGTGTGGGCGTGCACCTGCTTACCCAAATCCAGATTAAGAACAGCCCCACAAGCTTTAAAAAGCGCCGAAAACGTAAACGAAACAGGACTGACGCCATCCCTCCTCATTCTCGTATACAAGTTAATAGATTCAGACAAGGGTCCTTGAAGCGCATACCCACGAATCATGGCAGTCCAAAGAAAGGGGTTGGGGTATTTAACCTGTCCAAAAACCAGACGTGGGTAGGAATCCATCGGGACATCTACCCTCGTGAGCATGCGGATGAGTTTGGTGAGGACGTAAGAGCATTGACTCAATCCGTTGCGGACGATATGGCCGTGGACTTGCTTGATTTGAGAAAAGACCGTGCAGTCGTGAAGAATACTTATAAGTCGCCATTCTAA

Coding sequence (CDS)

ATGTATTGCACAAGGCAGAGTGCTCCTCAACTATGGTTTTCTTCCACCAAGGAATCAGCCAAGAAGGAATCAGTTGAGAATGAGAAGACTGTTAATGAGAAAACAGGATCACCAAAAGTTACCACAAGAACAAGTCCCGTTGTGGAAGTGATGAAATCTCATGTTATCCCTTATAATGATCTCCCTTCCAGTGATCTCAGATGCAGCACACATGACATTGTGGCAATCCTCGCATATCCTAAGCATCAGTACATAGCAATCCATATGCCAATGCAAGCTTTTCACTATGACTCATCAGTATTCGCTCCTTTTCATCATCACTCATATCATAAGGCACAGATCTCAAGATTCCCATGGATGCGGCAAGCTCCAAGCAGTGCTCCCCATACACCTCCGTGGGGTTCCATTGACATGGTTTCGATGAGCTCGATTAGCATATTTAACTGCACCCAACTGTGCACAGGCCGAGATGACACCAACCAGTGTAACTTCATCGGTGTCCATACCTACGTCCTGCATTTTTTGAAAATACTCCAATGCCTCCTTTGGTCTAGCATTTTGGGCATAACCAGTGACCATTGCCGTCCATGCCACCATATCCTTCAAAGGCAATTCATCAAACAGGTCACCAGCAGATTCCATATCCCCAAACTTCGCATACGCAACAATCAGCTCAGTCCAAGAAACCACATCTCTCTCAGACATTTCATCGAACACCTTCCGCCCACAACCCAAGAACCCACATTTCACATACATATCAATCATCGTATTACCAACATACAAATCAGAAGCAAATCCCCCAATCAAAATCGTGTGGGCGTGCACCTGCTTACCCAAATCCAGATTAAGAACAGCCCCACAAGCTTTAAAAAGCGCCGAAAACGTAAACGAAACAGGACTGACGCCATCCCTCCTCATTCTCGTATACAAGTTAATAGATTCAGACAAGGGTCCTTGAAGCGCATACCCACGAATCATGGCAGTCCAAAGAAAGGGGTTGGGGTATTTAACCTGTCCAAAAACCAGACGTGGGTAGGAATCCATCGGGACATCTACCCTCGTGAGCATGCGGATGAGTTTGGTGAGGACGTAAGAGCATTGACTCAATCCGTTGCGGACGATATGGCCGTGGACTTGCTTGATTTGAGAAAAGACCGTGCAGTCGTGAAGAATACTTATAAGTCGCCATTCTAA

Protein sequence

MYCTRQSAPQLWFSSTKESAKKESVENEKTVNEKTGSPKVTTRTSPVVEVMKSHVIPYNDLPSSDLRCSTHDIVAILAYPKHQYIAIHMPMQAFHYDSSVFAPFHHHSYHKAQISRFPWMRQAPSSAPHTPPWGSIDMVSMSSISIFNCTQLCTGRDDTNQCNFIGVHTYVLHFLKILQCLLWSSILGITSDHCRPCHHILQRQFIKQVTSRFHIPKLRIRNNQLSPRNHISLRHFIEHLPPTTQEPTFHIHINHRITNIQIRSKSPNQNRVGVHLLTQIQIKNSPTSFKKRRKRKRNRTDAIPPHSRIQVNRFRQGSLKRIPTNHGSPKKGVGVFNLSKNQTWVGIHRDIYPREHADEFGEDVRALTQSVADDMAVDLLDLRKDRAVVKNTYKSPF
Homology
[Close]
BLAST of Lsi07G002400 vs. ExPASy TrEMBL
Match: A0A2P2Q334 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.6e-20
Identity = 61/146 (41.78%), Postives = 89/146 (60.96%), Query Frame = 0 

Query: 253 INHRITNIQIRSKSPNQNRVGVHLLTQIQIKNSPTSFKKRRKRKRNRTDAIPPHSRIQVN 312
           +N+RI N+QI +K  NQNR+ +HLL Q  I++  T  K RRKRKRNR  A+  H ++Q N
Sbjct: 1   MNNRIGNMQICAKPTNQNRLCMHLLPQTHIQSHTTCLKNRRKRKRNRPSALSSHDKVQSN 60

Query: 313 RFRQGSLKRIPTNHGSPKKGVGVFNLSKNQTWVGI-HRDIYPREHADEFGEDVRALTQSV 372
            F +  L R+  N G  KKGV   +  +N T VG+ H D+   E  D+ G+DV AL +++
Sbjct: 61  GFAKPPLGRVTPNDGCVKKGVWKLDPVENGTSVGVFHGDVEFGERTDDLGDDVAALFEAI 120

Query: 373 ADDMAVDLLDLRKDRAVVKNTYKSPF 398
            +D++VDLLDL    A ++   +  F
Sbjct: 121 EEDLSVDLLDLSDASAAIEEVIELGF 146

[Close]
BLAST of Lsi07G002400 vs. ExPASy TrEMBL
Match: A0A371FBM5 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_44389 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-06
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 0 

Query: 150 TQLCTGRDDTNQCNFIGVHTYVLHFLKILQCLLWSSILGITSDHCRPCHHILQRQFIKQV 209
           TQL   R   NQ  FI +H +  H  K  Q L+  +IL IT    RP ++IL+ + IKQ 
Sbjct: 2   TQLRRSRHQANQYEFIRLHIHRFHLEKNSQRLIRLAILDITRYQSRPGNNILRPRMIKQE 61

Query: 210 TSRFHIPKLRIRNNQLSPRNHISLRHFIEHLPPTTQEPTFHIHINHRITNIQIRSKSPNQ 269
               H+ +L I  N    RN+I LRH I+H       P  H   +H +    I  +   +
Sbjct: 62  PRGHHVTRLGIPINHGGERNNILLRHSIKHASGAGHIPYLHKTQHHGVPRRHISVRHFIK 121

Query: 270 NRVGVHLLTQIQIKNSPTS 289
           + +G+H +++  I N  +S
Sbjct: 122 HLLGLHNISKGSIANKQSS 140

[Close]
BLAST of Lsi07G002400 vs. ExPASy TrEMBL
Match: A0A398ANN9 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_A00178 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-05
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 0 

Query: 187 LGITSDHCRPCHHILQRQFIKQVTSRFHIPKLRIRNNQLSPRNHISLRHFIEHLPPTTQE 246
           L I  +H RP   I  R FI+ +      P LR+  +   PR HIS+RHF+EHLP   Q 
Sbjct: 50  LNIPVNHRRPRVTISLRHFIEHLPRFLDQPSLRVTVHHHVPRTHISVRHFVEHLPRIDQA 109

Query: 247 PTFHIHINHRITNIQIRSKSPNQNRVGVHLLT 279
           P F +H +  + +    +K P    V +HLLT
Sbjct: 110 PAFRVHSHQTVADNDAGNK-PGGYNVFMHLLT 140

[Close]
BLAST of Lsi07G002400 vs. ExPASy TrEMBL
Match: A0A5A7R720 (Type I restriction-modification systemmethyltransferase subunit OS=Striga asiatica OX=4170 GN=STAS_29955 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-04
Identity = 41/123 (33.33%), Postives = 60/123 (48.78%), Query Frame = 0 

Query: 176 KILQCLLWSSILGITSDHCRPCHHILQRQFIKQVTSR----FHIPKLRIRNNQLSPRNHI 235
           K+L   L  S +    +H R    +  + F K+V         +P L I     +PR+H+
Sbjct: 9   KLLFAQLKKSRVPTNPNHARVRKIVHFQTFTKRVFKEPQGLLVLPHLCIPIYHPTPRHHV 68

Query: 236 SLRHFIEHLPPTTQEPTFHIHINHRITNIQIRSKSPNQNRVGVHLLTQIQIKNSPTSFKK 295
            L HF+EH+P  TQ P F IHI+HR  ++   ++ PN +R  VH LTQ  I      F  
Sbjct: 69  FLGHFVEHVPGITQHPAFRIHIDHRAPHVHALAE-PNLHRQTVHRLTQAMIVYHRARFDH 128

[Close]
BLAST of Lsi07G002400 vs. ExPASy TrEMBL
Match: A0A3Q7INU8 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-04
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 218 LRIRNNQLSPRNHISLRHFIEHLPPTTQEPTFHIHINHRITNIQIRSKSPNQNRVGVHLL 277
           LRI +NQ SPRNHISLRHFI+HLP  T   T  +HIN R+    I +K P    V ++  
Sbjct: 47  LRIPSNQRSPRNHISLRHFIKHLPSITHTLTLGVHINQRVIRNSIMTK-PRPQEVFMNYS 106

Query: 278 TQIQ 282
           T  Q
Sbjct: 107 TFFQ 109

[Close]
BLAST of Lsi07G002400 vs. NCBI nr
Match: RDX75698.1 (hypothetical protein CR513_44389, partial [Mucuna pruriens])

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-06
Identity = 45/139 (32.37%), Postives = 68/139 (48.92%), Query Frame = 0 

Query: 150 TQLCTGRDDTNQCNFIGVHTYVLHFLKILQCLLWSSILGITSDHCRPCHHILQRQFIKQV 209
           TQL   R   NQ  FI +H +  H  K  Q L+  +IL IT    RP ++IL+ + IKQ 
Sbjct: 2   TQLRRSRHQANQYEFIRLHIHRFHLEKNSQRLIRLAILDITRYQSRPGNNILRPRMIKQE 61

Query: 210 TSRFHIPKLRIRNNQLSPRNHISLRHFIEHLPPTTQEPTFHIHINHRITNIQIRSKSPNQ 269
               H+ +L I  N    RN+I LRH I+H       P  H   +H +    I  +   +
Sbjct: 62  PRGHHVTRLGIPINHGGERNNILLRHSIKHASGAGHIPYLHKTQHHGVPRRHISVRHFIK 121

Query: 270 NRVGVHLLTQIQIKNSPTS 289
           + +G+H +++  I N  +S
Sbjct: 122 HLLGLHNISKGSIANKQSS 140

[Close]
BLAST of Lsi07G002400 vs. NCBI nr
Match: KAF8083292.1 (hypothetical protein N665_0783s0002, partial [Sinapis alba])

HSP 1 Score: 63.2 bits (152), Expect = 6.0e-06
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 0 

Query: 223 NQLSPRNHISLRHFIEHLPPTTQEPTFHIHINHRITNIQIRSKSPNQNRVGVHLLTQIQI 282
           N   P N+ISLRHF+EHL    + PTF I IN R T+IQI SK+   + +G++ LT    
Sbjct: 4   NHSVPSNNISLRHFVEHLDCHIEFPTFSIEINQRSTDIQIISKAATFH-MGMYQLTIFNR 63

Query: 283 KNSPTSFKKRRKRKRNRTDAIPPHSRIQVNRFRQGSLKRIPTNHGSPKKGVG 335
             + T  +++R R    ++A+  H  +Q+  F +  + R+ ++H  P+  +G
Sbjct: 64  SQTSTRLQRKRVRILRGSNAVTQHLVVQIQSFFRVIVGRVGSDHYVPRNRIG 114

[Close]
BLAST of Lsi07G002400 vs. NCBI nr
Match: RID77250.1 (hypothetical protein BRARA_A00178 [Brassica rapa])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-04
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 0 

Query: 187 LGITSDHCRPCHHILQRQFIKQVTSRFHIPKLRIRNNQLSPRNHISLRHFIEHLPPTTQE 246
           L I  +H RP   I  R FI+ +      P LR+  +   PR HIS+RHF+EHLP   Q 
Sbjct: 50  LNIPVNHRRPRVTISLRHFIEHLPRFLDQPSLRVTVHHHVPRTHISVRHFVEHLPRIDQA 109

Query: 247 PTFHIHINHRITNIQIRSKSPNQNRVGVHLLT 279
           P F +H +  + +    +K P    V +HLLT
Sbjct: 110 PAFRVHSHQTVADNDAGNK-PGGYNVFMHLLT 140

[Close]
BLAST of Lsi07G002400 vs. NCBI nr
Match: GER52497.1 (type I restriction-modification systemmethyltransferase subunit [Striga asiatica])

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-04
Identity = 41/123 (33.33%), Postives = 60/123 (48.78%), Query Frame = 0 

Query: 176 KILQCLLWSSILGITSDHCRPCHHILQRQFIKQVTSR----FHIPKLRIRNNQLSPRNHI 235
           K+L   L  S +    +H R    +  + F K+V         +P L I     +PR+H+
Sbjct: 9   KLLFAQLKKSRVPTNPNHARVRKIVHFQTFTKRVFKEPQGLLVLPHLCIPIYHPTPRHHV 68

Query: 236 SLRHFIEHLPPTTQEPTFHIHINHRITNIQIRSKSPNQNRVGVHLLTQIQIKNSPTSFKK 295
            L HF+EH+P  TQ P F IHI+HR  ++   ++ PN +R  VH LTQ  I      F  
Sbjct: 69  FLGHFVEHVPGITQHPAFRIHIDHRAPHVHALAE-PNLHRQTVHRLTQAMIVYHRARFDH 128

The following BLAST results are available for this feature:
BLAST of Lsi07G002400 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi07G002400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P2Q3344.6e-2041.78Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A371FBM51.7e-0632.37Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_44389 P... [more]
A0A398ANN95.5e-0538.04Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRARA_A00178 PE=4 SV=1[more]
A0A5A7R7202.7e-0433.33Type I restriction-modification systemmethyltransferase subunit OS=Striga asiati... [more]
A0A3Q7INU83.5e-0450.00Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1[more]
BLAST of Lsi07G002400 vs. NCBI nr
Match NameE-valueIdentityDescription
RDX75698.13.5e-0632.37hypothetical protein CR513_44389, partial [Mucuna pruriens][more]
KAF8083292.16.0e-0634.82hypothetical protein N665_0783s0002, partial [Sinapis alba][more]
RID77250.11.1e-0438.04hypothetical protein BRARA_A00178 [Brassica rapa][more]
GER52497.15.6e-0433.33type I restriction-modification systemmethyltransferase subunit [Striga asiatica... [more]
BLAST of Lsi07G002400 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G002400.1Lsi07G002400.1mRNA