Lsi07G002200 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G002200
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr07: 2360624 .. 2364781 (-)
RNA-Seq ExpressionLsi07G002200
SyntenyLsi07G002200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCACACCATGAAATCCTCAGAGCTAGAGAGAGAAAACAGAGAGTAATACAACAAACTAACCCATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTTTGTAGTTGTACCTTTTTTTTTTTTTTTTTCTCTCACACCATGAAATCCTCAGAGCTAGAGAGAGAAAACAGAGAGTAATACAACAAACTAACCCATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTTTGTAGTTGTACCTTTTTTTTTTTTTTTTTCTCTCACACCATGAAATCCTCAGAGCTAGAGAGAGAAAACAGAGAGTAATACAACAAACTAACCCATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTTTGTAGTTGTACCTTTTTTTTTTTTTTTTTCTCTCACACCATGAAATCCTCAGAGCTAGAGAGAGAAAACAGAGAGTAATACAACAAACTAACCCATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGTTTGTAGTTGTACCTTTTTTTTTTTTTTTTTTTGAAGTAAAGGGTCATGACTCTTTTTTAAGTCCCATTCATTATTCTACTCAATTTTTGGTAAAATTGTCAAAACCTAAAATTGACCCAATACTCTATTTTTCTTGTGTAAATCAAAGTTCATTTTGTTTTTTCGTATTTTAGGTAATTTGGGTGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCAGAGGCGGCGGCAGGGGGGAAAAAGAGGAAGCTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTCGGGAGTGAACACAAATTGGAATCGGAAAGAAAGGACCGTTTAGCGTCGGAGTTGGGGCTGGATCCCCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTTGAGGAGGAGTATTCTAACCTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTAGAAACTGAGGTCTGTTTCCTTCTCTCTTTCTCTTCTTCGCTCCCAAACAGAATAAAAACCATTTTCTTTTTTCTTATTTTATTCGATTACTTTGAGAAAATGGGAGAAAACTTCTAAAACTACCGATAATATTTAAGAAATTGTATCATTTAATAATGTATTAGTTAATTCATTTAGTGCATATACTATGTTGATTCATCTGAACTTATCTACGTTGTTGAACTAAAAAAAGAGTTAAAAGTATGTATATCATATCTAAGGTTGCTATGTAATATTTATTAGGGAAATTATTATAAAGTGAAAAAATAATATCAAACTATTTATAAATATAGAAAATTGTTACTGTTTATCAGCGATAGACTGCAATAGGATTCTATCATTTGAGTGATAGACAGCTATAGAAGTCTAATGCTCAAGTGATAGAATTTTATTGCGGTCCATCGCTGATAGATAGTAAAATTTTTCTATATTTGTAAATAGTTTTGTTCATTTTTCTATATTTGAAAACAACTCTATTTATTACCTATCAGAAGAAATATCTTCGGCTTAGTTTTTTTAGTTCAACAACTACAAGATAGGAGATCGAACCTCCAGCTTCTAAGAAGAAAAATCATGCCAATTATTCTTTTTGAAAACACGGATGATGATTGGTAGAAAAATAGATTAAGTTATAAATATGTAGTTTCAAGATTTTAAGGGTGTTTGGGTTATTATAGTTTGTAAAATATAATAGTCTCTAGAATATAATCGTTTGTGTTTGGAATGCAAACTATTTTAGTATGGATAGGAAATAGTAAAAATTGTAACAAATAGTAAATACGGTAACAAAGAGGAATTTGAAATAGTAATACAATAGTTAATTGTAGGTAAATAGTTGGAAATACTAACTATTATAATTGGAGTTTTAAACATATAACTCACTCCACTCACTTGAAGTTGGGGTCCATACAACCTCTAAAAGCTCTCTCAGCTTTTTTTAAATGTCTATTAGGCGTTCCATATATCCTTAAATTAAAAAAATATTAAATAATTTTTAATGTTTTAATTTTGTATTTGATAAACTCTTGATACATTTAAGACTTATAAAAACCGATCTATTATTAGATTTAAAATTGAATTGCATGTAAAATGAAAAATAGGACTTTGAACTTTGAACTTTCTACCTAATAGATTTATAAATTTTAAGAACTCTTGAATAGAGTTAAAGATCTATCAGATACAAAAACAAACATACAATGTCTTATTGGACAAAAATTTAAAAGTTTAAAATTTTATTAGACACTTTCTAAATTTACAGACCTATTTGACAAAAAATTGAAAATTCTCACATTCATTATATATTTTTCTAAAGTTCAAATAACAATTAGACACAAAGTCAAAATTTTAGAGAAAGTAAACACTTGAACTAATGTTGAAAATGTGTATTCAAAGTTAGAGAGAGAAAAAAAAAAAAGAGAAGATAAACTTTTTACTGTAATAAATATGAGGTATAGATATTTAAACTTCTAATCTTAAAAAAATGAGTTCACAATATTTACCGTTGCGGATGCCACATTAAAAAATGAAGAGACTTCACATTTTTAATAAGATAAATGAGTTACTCCTCTTTTTTTTCAATTAAATTTGAGATAGAACATTATATTATTTAATAGAACTATCTTTATATTAACAAACAAAAGATAAACTTCTTTGCTATTAAAATAAACACGTGCAAAAAATTTAACGGTAGACGAAAAAAAGCTGGGTAACTTTGGGGTGAAAAAGAGAGGAGTGGGCCAAGATTAATGAACGTGCATGGGCTCTTGGCTCGAAGCAACCCACGCCACCTTGTTGAGAATCGGGTAGAAAAAATACTTTTTCTTTTTGTAAAAAGAAAATATTTTGACAGAACTTTTGATAAGCCAATTGCCTTACAACAGCCACCTCCACAACTAAACTATTTTACAAATATTCAAATTGAAATTTTAAAAAAAATAATAATAATAATAAAAAATAGAAATAAAGTGTTTCGTACAACGTTGTCTGTGTTTCTATGGGTATGGGCCATCGGCCCACTTTGGTGGGTCTCACTTCAACATTGCACCTATCAAGACAAAACAAACCACACCCTTCTCTCTCTCTCTTTTTATATATATATATATATATATATATATATTTCAACTTATACCATTTTAAGGGGTCTTGCACTTATTCTTAGTACAACAAATATAGAAGTATGTGTCTTAATCGTCGAGTTATATTCATGTACTAATCTTTATCTCTTTGTTCTTAGAATAATTTGAAGAGTCGTTATTTTTAATGGCTTTCTCTTTTAAAATAATTTTAAGAAGGTTTCTTAAATGATTTTAAGGCTAAATTACAATTTTGGTCACAAACCATTTTTTTTTATTTTAAAAAATGTCTATTAAGTATCTAGAAGAAAAAAAATGGAAAGGACAAGAAATTTTGTATCATATAAAAGTGGATGAATTTTGAGGCTTATAAAAGATTGGAACATAGGTTGTTTGACACAATAAAAAATTGATTTAGTTATTAAATATTTTAAATTTTTTTTTGCAGATACTGAAGTTGAAAGAACAACTTTCAGAAGCAGAAAAAGAGAAAGAGAGGGTAATAATGGGAGAACGGGCCGATGGGCCTGTAAGCAGCAGCAGCCCAAGCCCATCAATGTCAATAGATGCCATGGACCCCACATGCCTTGGGGAAATTCCACCATCATATGAAGATGTGTTTTATTACATGCCTGAAAATTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGATTTTCCTTATAATTCTTCCCTTTTTTTTATGTATTATAAAAATGTTTTTATTAGTCTTCCTTTTTTTTTTCTTTGTAGAAATCTTATCAAGCCAGTGTAAATCCTAAGTTAAATTTTCCTTTCACTTTTCTCTCTCTCTAGCTATTTAATTTAATTGTTAATCCTTTT

mRNA sequence

CTCTCACACCATGAAATCCTCAGAGCTAGAGAGAGAAAACAGAGAGTAATACAACAAACTAACCCATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGGTCATGACTCTTTTTTAAGTCCCATTCATTATTCTACTCAATTTTTGGTAAAATTGTCAAAACCTAAAATTGACCCAATACTCTATTTTTCTTGTGTAAATCAAAGTAATTTGGGTGAGTCTAAACCGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCAGAGGCGGCGGCAGGGGGGAAAAAGAGGAAGCTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTCGGGAGTGAACACAAATTGGAATCGGAAAGAAAGGACCGTTTAGCGTCGGAGTTGGGGCTGGATCCCCGGCAGGTGGCTGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAACAAGAAACTTGAGGAGGAGTATTCTAACCTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTAGAAACTGAGATACTGAAGTTGAAAGAACAACTTTCAGAAGCAGAAAAAGAGAAAGAGAGGGTAATAATGGGAGAACGGGCCGATGGGCCTGTAAGCAGCAGCAGCCCAAGCCCATCAATGTCAATAGATGCCATGGACCCCACATGCCTTGGGGAAATTCCACCATCATATGAAGATGTGTTTTATTACATGCCTGAAAATTATTGTATTTATGGCATGGAATGGCCTAATCCCTACATTTGATTTTCCTTATAATTCTTCCCTTTTTTTTATGTATTATAAAAATGTTTTTATTAGTCTTCCTTTTTTTTTTCTTTGTAGAAATCTTATCAAGCCAGTGTAAATCCTAAGTTAAATTTTCCTTTCACTTTTCTCTCTCTCTAGCTATTTAATTTAATTGTTAATCCTTTT

Coding sequence (CDS)

ATGAACCACCAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGAAGCTGAAGAGCATCAAGCAGTACAAATCTCTCAGTTGTACACTGAATTATACATCCAAATGGTACCCCAACAAGGGTCATGA

Protein sequence

MNHQEAEEHQAVQISQLYTELYIQMVPQQEAEEHQAVQISQLYTELYIQMVPQQEAEEHQAVQISQLYTELYIQMVPQQEAEEHQAVQISQLYTELYIQMVPQQGS
Homology
[Close]
BLAST of Lsi07G002200 vs. NCBI nr
Match: XP_038877287.1 (homeobox-leucine zipper protein ATHB-40-like [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-04
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 1  MNHQEAEEHQAVQISQLYTELYIQMVPQQ 30
          MNHQE EEHQAVQISQLYTELYIQMVPQQ
Sbjct: 1  MNHQETEEHQAVQISQLYTELYIQMVPQQ 29

The following BLAST results are available for this feature:
BLAST of Lsi07G002200 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi07G002200 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi07G002200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877287.12.0e-0496.55homeobox-leucine zipper protein ATHB-40-like [Benincasa hispida][more]
BLAST of Lsi07G002200 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G002200.1Lsi07G002200.1mRNA