Lsi07G001830 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi07G001830
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr07: 2002849 .. 2003064 (-)
RNA-Seq ExpressionLsi07G001830
SyntenyLsi07G001830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCCCTTGGAGCTTCCTACGCCAAAATTCACCTCCTACAGAAGCAACAGAAGGAGAAGCTTGAGAGAATGGAAGCAGATCGATTCTCTCGAGGAGAGGCCGGAACCGCCACCAGCTCCTCCGGTGGCAGTTCTTTGCTTGCAAGGAATAACAAAGTTCACCCGGGAAGCATTGCTCCGGCGGCCGCCGACAGCTACAAAAACAGGACATGA

mRNA sequence

ATGTCATCCCTTGGAGCTTCCTACGCCAAAATTCACCTCCTACAGAAGCAACAGAAGGAGAAGCTTGAGAGAATGGAAGCAGATCGATTCTCTCGAGGAGAGGCCGGAACCGCCACCAGCTCCTCCGGTGGCAGTTCTTTGCTTGCAAGGAATAACAAAGTTCACCCGGGAAGCATTGCTCCGGCGGCCGCCGACAGCTACAAAAACAGGACATGA

Coding sequence (CDS)

ATGTCATCCCTTGGAGCTTCCTACGCCAAAATTCACCTCCTACAGAAGCAACAGAAGGAGAAGCTTGAGAGAATGGAAGCAGATCGATTCTCTCGAGGAGAGGCCGGAACCGCCACCAGCTCCTCCGGTGGCAGTTCTTTGCTTGCAAGGAATAACAAAGTTCACCCGGGAAGCATTGCTCCGGCGGCCGCCGACAGCTACAAAAACAGGACATGA

Protein sequence

MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEAGTATSSSGGSSLLARNNKVHPGSIAPAAADSYKNRT
Homology
BLAST of Lsi07G001830 vs. ExPASy TrEMBL
Match: A0A2P5CW36 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-05
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEA-----GTATSSSGGSSLLARNNKVH 60
          MSS+GAS A ++++QK+QKEK+ERME +R  RGE+       +  S GGS+ L R+ K+H
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGRSGGGSNTLGRSKKIH 60

Query: 61 PGSIAPAAAD 66
          PG+   A ++
Sbjct: 61 PGNFPGAESN 70

BLAST of Lsi07G001830 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-04
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEAGTATSSSGGSSLLARNNKVHPG 58
          MSS+GAS A+I++++K+QKEKL+RME +R  +GE+    S   GS+ + R+ KVHPG
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVSGST-IGRSKKVHPG 56

BLAST of Lsi07G001830 vs. ExPASy TrEMBL
Match: A0A2P5BZF9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEA-----GTATSSSGGSSLLARNNKVH 60
          MSS+GAS A ++++QK+QKEK+ERME +R  RGE+       +  S G S+   R+ KVH
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGGSGGASNTFGRSKKVH 60

Query: 61 PGSIAPA 63
          PG    A
Sbjct: 61 PGKFPGA 67

BLAST of Lsi07G001830 vs. ExPASy TrEMBL
Match: A0A061DQL6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001203 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.1e-04
Identity = 29/71 (40.85%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEAGTATSSSGGSSLLARNNKVHPGSIA 60
          MSS+GAS A+++L++K+QKEK++RME +R  RGE  T        +++ R +KVHPG+  
Sbjct: 1  MSSIGASCAEVYLMRKRQKEKMKRMEEERVKRGETTTGIEERKAGTIVGR-SKVHPGNFT 60

Query: 61 PAAADSYKNRT 72
            A  +  N +
Sbjct: 61 SPADSAAGNES 70

BLAST of Lsi07G001830 vs. ExPASy TrEMBL
Match: I1MYV6 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G020300 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.4e-04
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEAGTATSSSGGSSLLARNNKVHPGSIA 60
          MSS+GA  A+I++++K+QKEKL+RME +R  RGE  T       SS+    NKVHPGS  
Sbjct: 1  MSSIGARSAEIYVMEKRQKEKLKRMEVERVRRGEVSTEERKVASSSV--GKNKVHPGSEQ 60

Query: 61 PAAADS 67
             +D+
Sbjct: 61 GVTSDN 64

BLAST of Lsi07G001830 vs. NCBI nr
Match: KAG6600624.1 (hypothetical protein SDJN03_05857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 3.4e-21
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEAGTATSSSGGSSLLARNNKVHPGSIA 60
          MSS+GASYAKIHLLQKQQKEKLERMEADR SRGEA TA +SSGG SLLAR NKVHPGSIA
Sbjct: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTA-ASSGGGSLLARKNKVHPGSIA 60

Query: 61 P-AAADSYKNRT 72
          P AAADSYKNRT
Sbjct: 61 PAAAADSYKNRT 71

BLAST of Lsi07G001830 vs. NCBI nr
Match: KAE8649159.1 (hypothetical protein Csa_014463, partial [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 60/72 (83.33%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEAGTATSSSGGSSLLARNNKVHPGSIA 60
          MSSLGASYAKIHLLQKQQKEKLERME +RFSRGE  TAT SS G SLLARN KVHPGSIA
Sbjct: 11 MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA 70

Query: 61 P-AAADSYKNRT 72
          P    DSYKNRT
Sbjct: 71 PTTTVDSYKNRT 82

BLAST of Lsi07G001830 vs. NCBI nr
Match: KAG6577271.1 (hypothetical protein SDJN03_24845, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 5.5e-19
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEAGTATSSSGGSSLLARNNKVHPGSIA 60
          MSS+GASYAKIHLLQKQQK+KLE MEA+R SRGEA  ATSS GG SLLAR+NKVHPGSIA
Sbjct: 1  MSSIGASYAKIHLLQKQQKDKLESMEANRPSRGEAAAATSSGGGGSLLARSNKVHPGSIA 60

Query: 61 PAAADSYKNRT 72
          P  ADS KNRT
Sbjct: 61 P-VADSNKNRT 70

BLAST of Lsi07G001830 vs. NCBI nr
Match: PON65265.1 (hypothetical protein PanWU01x14_117820 [Parasponia andersonii])

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEA-----GTATSSSGGSSLLARNNKVH 60
          MSS+GAS A ++++QK+QKEK+ERME +R  RGE+       +  S GGS+ L R+ K+H
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGRSGGGSNTLGRSKKIH 60

Query: 61 PGSIAPAAAD 66
          PG+   A ++
Sbjct: 61 PGNFPGAESN 70

BLAST of Lsi07G001830 vs. NCBI nr
Match: PON54203.1 (hypothetical protein TorRG33x02_303210 [Trema orientale])

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-04
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEADRFSRGEA-----GTATSSSGGSSLLARNNKVH 60
          MSS+GAS A ++++QK+QKEK+ERME +R  RGE+       +  S G S+   R+ KVH
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGGSGGASNTFGRSKKVH 60

Query: 61 PGSIAPA 63
          PG    A
Sbjct: 61 PGKFPGA 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5CW362.2e-0545.71Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE... [more]
A0A2N9EUS91.8e-0450.88Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1[more]
A0A2P5BZF92.4e-0446.27Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV... [more]
A0A061DQL64.1e-0440.85Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001203 PE=4 SV=1[more]
I1MYV65.4e-0446.97Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G020300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6600624.13.4e-2188.89hypothetical protein SDJN03_05857, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8649159.11.3e-2083.33hypothetical protein Csa_014463, partial [Cucumis sativus][more]
KAG6577271.15.5e-1981.69hypothetical protein SDJN03_24845, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON65265.14.5e-0545.71hypothetical protein PanWU01x14_117820 [Parasponia andersonii][more]
PON54203.15.0e-0446.27hypothetical protein TorRG33x02_303210 [Trema orientale][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..31
NoneNo IPR availablePANTHERPTHR34950:SF2BNAC01G00560D PROTEINcoord: 1..68
NoneNo IPR availablePANTHERPTHR34950OS04G0457400 PROTEINcoord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G001830.1Lsi07G001830.1mRNA