Lsi07G001540 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G001540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Tetratricopeptide-like helical
Location	chr07: 1653926 .. 1657159 (+)
RNA-Seq Expression	Lsi07G001540
Synteny	Lsi07G001540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGAATTGATTTGAATGAATGGAATATGGATGCTGAAGAATGGGAAAGAAGCCAAATGAAGAACGATATTATTCCGCCACATTTATTAGCCGACCACCAAGAACATGATCATAATGCAGTCAGTAGTCCGATCACTAACTTTGACTTTCCGGCCGCCGGATTCTTCCGCACCTGGCGGCAGAAGGCGGCGGAGCTGATGGTGCTCATGGCATTTTGGGTGTCATCTCTGTCATTTAACCACAACCATAGAGAAAAGGGCTTCTAATGATCTCATATATAAGAAGAAAATTCTAGTATTATTGTAGTATTTACTACTCTCATTTATTATTTGGCACGTCATCAAATGATTTATTAATCTATTATTCATATATTCTATAAAATTCTTAAATACTATTTTTATGACAAACAATGAATGGAAATAGTATTGTATACGTATGAAATTTTTTGCTTTTTATTTTTCTATGTTTTTATAATTATTACATTGCTAGGGCTAGGCTGTTAAATATGTGTGACACTGATTTAAAATATTTATGATAAAATTTAAATTTATTTATTTTTAATTAAATATATTATCGAAAACCTTTGCTTTCTAAACTCCTTAAAATCTAGGATATATTTATTTAATTACAATTGCATAAAAATTACATGAAAATATGAGAATTTTTTATATCTAGAGAGATACATGAAAAATGCATACAAATTACTACCATTGGAAGAGAAGAACTAAGAGGCATATAATATAAAGAAATAAACAAAATTATCACTTGTCCAACTTATAAAATAAAATAACAATATAATTATCCAAACCTAACCATCTTTTTTAAAAACCCAATAAATCTCTATTATTGAAATTGTTGTACTAATAAAAGAATGAATAAGTATATGATGTTTATTATTATTATTTTTGAAAAAGTAATAGGGAATTTGAACAACAAATTTCTTGGTCTTTAGCATGTATTAATGTCAATTGGGCTGATCTGTTGTTAGTTTATATGCTAAATATCTTAGTGTTGTTATTGTTTTTTATTCGTCACTAAAAGTTTAAATATAGTTTAGAAATAATAGAGTGTGGTTTATTTACAATTTAAGTGGGGCTCAATAATATTTTGAGTTTATTTGGCAACTTGCATCTGTTACCTGTGGATATAGCTTAATGATTATTGGGCGCAGCCATTACAGACCTTTAAAAGTATGGTTTGAAGAAAAAATGGGAATATTAAATGCATTACTTACCTAATATTATAGAATATGGTAAATAATGCTTTTGGTTGGTGGAATTTTGGATTCTTTTATCTGTTAATTATGGTGATTTATATTAACATAAAATGTATAAAATGCATGATTAAGAAAATTAAATATATGCTTGCAAGGTTGTATTGCAATGGAAAAGCCAAGATTTATGTTACTAGATAGCTATGTTTTTTCCCTAAATATTATGGTGATTATGTGTGGATTTAATTCTATTTACATTCAATCGTATATTTATTGTCTTTGGCCGATTCTTAACATGAACATAATTCAAATGATTTAAATAGGTATTACTTACAAAAGGTAGAGGTTCCATTTCTTTAACCATGGTTTGAACACAAAGATAAAATATTTGATGCAAATCAAATTTCTATAATCTAGACATATTTTTCTAAATTGTTGATGGGATGATGTGCAATTTTTTCTTTTTTCTTTTCATAAAAAGGCATTTCTATCACCAACTCCAATTTAAAAAGAAAAGTACTTGGGTGTTAGCTAGGCTATACCTATTTTTGCGCACTCTAGATGCAACCCGCTCTAATTGTCCAATTAAAATTAATTGTCATGTGACAAACAATTATGTTTTTTTTTTAAATGGTATCGTTATTTTCGAACGGTTATTTTTCAACTATATAATAAATTGAATTATCATTTACTTATGCAGGCTGCACCTTATCACTGTCCTTTTAAAAACATAGCAAATGACTTTTGTTATGTGGTTATTTTCTCTTAAAAGCAAGGATTAAAATATCGATGTCGATATTGATATCGACATTTCAATTTTACGGATATATTGACAAAATATCGATATCGATGGATATTTCTGTAAATCACGAATTTTATAAAATTTATTTAGATTAATAATTAAGTTGTTTTTATTCTCAAACTAAGTTATGGATATTGTTATTAGTATTTCTGCTCATATTAGATTAAATAGGTGACATTTTTATGTGTTACAAGCATTAATAAAAGATGGAGATGATCCATAGATATTTAATATCGATATCGAACCCTTTGACTTACGAATATATCGACATATCCATGGACATTTTCATTCTTGCTTAAAAGTACGACATCATATGAGGTGGGTTATATTTTCAATTCAATTACACTCCTACTATAAGAACAAGAAAAGTACTTGAGTGTATCCAAGACTACACCTATAATTGTGTAGTCTACTCAAATGTCTAATCACAAATTGTCGTGCTGTCAATTTTTTTCTTTTAAAAAATATATTTTTTCTTTTATGATTGTAGGGATGCATAGAAATTGAGAAGTGTTAGAGAGAGATAGAGAGAAATAGAGAGAGATAGAAAACGGAGGTTTTTGATATTAGGGTTTCCACCTCAACACAATTCTATTGAAAATATGTTTCAATACTAGAGGTCCAACAAACATTTATGTATATGAGAAATTAACATAATATAAAATATTATTACATTAAACATTGAATAATTCTAATAGATGGAAATACACTCATCTTGTATTTCTTTAAATTGGAAGGTTTTCCTCTCGCCTTCCTTGTTTGGACTTCTTGTCCCTCTTGTACATTTGTCCCTTACTAATGCATCTTTTTTGGGCCGAGGCGCTAAGAATATGTCAACTGCGCCCGTTGATCCCTCCACCTCTAGTACTTTTTCAAAAAATAGATGGAAATACACCTAAATATTACTCTAAAAAATAAATTAATTAAGTTACATTCCATAGTTATCTAATTATAGTCTCCTTTTCATAAAATTCTATTTTGAGAACAAAGTGATCACAAAAATTTATAATTTATTTTCTAATTTTAGAAACATGCTTAAAATCTTAATTCAGTCCAAAAATAAATATCTTTGTCAAACTCCCGAAGATACGTTTTATATAGCAACGAATTCTAAAGGCTAAATATGGATTTCGCACAGAACTTATAAATTATACAGAAATAATTTACGTCAAAATCACACGGGACACGGTTTATAAAGTAGATATGACTTTATAG

mRNA sequence

ATGGCAGGAATTGATTTGAATGAATGGAATATGGATGCTGAAGAATGGGAAAGAAGCCAAATGAAGAACGATATTATTCCGCCACATTTATTAGCCGACCACCAAGAACATGATCATAATGCAGTCAGTAGTCCGATCACTAACTTTGACTTTCCGGCCGCCGGATTCTTCCGCACCTGGCGGCAGAAGGCGGCGGAGCTGATGCTTAATGATTATTGGGCGCAGCCATTACAGACCTTTAAAAAACTTATAAATTATACAGAAATAATTTACGTCAAAATCACACGGGACACGGTTTATAAAGTAGATATGACTTTATAG

Coding sequence (CDS)

ATGGCAGGAATTGATTTGAATGAATGGAATATGGATGCTGAAGAATGGGAAAGAAGCCAAATGAAGAACGATATTATTCCGCCACATTTATTAGCCGACCACCAAGAACATGATCATAATGCAGTCAGTAGTCCGATCACTAACTTTGACTTTCCGGCCGCCGGATTCTTCCGCACCTGGCGGCAGAAGGCGGCGGAGCTGATGCTTAATGATTATTGGGCGCAGCCATTACAGACCTTTAAAAAACTTATAAATTATACAGAAATAATTTACGTCAAAATCACACGGGACACGGTTTATAAAGTAGATATGACTTTATAG

Protein sequence

MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTWRQKAAELMLNDYWAQPLQTFKKLINYTEIIYVKITRDTVYKVDMTL

Homology

[Close]

BLAST of Lsi07G001540 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.7e-10
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEH---DHNAVSSPITNFDFPAAGFF 60
          MAGID NEW MDAEEWER+++  D++PPHLLAD ++    D +  +S I+N+ FP  G F
Sbjct: 10 MAGIDSNEWAMDAEEWERNEI--DVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSF 69

Query: 61 RTWR 62
            WR
Sbjct: 70 EGWR 71

[Close]

BLAST of Lsi07G001540 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.7e-09
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRT 60
          MAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  
Sbjct: 10 MAGIDSNEWGMDAQEWERNEI--DVVPPHLLADEEDDEDGEYVTSTISNYCFRVDGSFGG 69

Query: 61 WRQK 64
          WR++
Sbjct: 70 WRRR 71

[Close]

BLAST of Lsi07G001540 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.7e-09
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRT 60
          MAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  
Sbjct: 10 MAGIDSNEWGMDAQEWERNEI--DVVPPHLLADEEDDEDGEYVTSTISNYCFRVDGSFGG 69

Query: 61 WRQK 64
          WR++
Sbjct: 70 WRRR 71

[Close]

BLAST of Lsi07G001540 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.6e-06
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT 48
          MAGID NEW MDAEEWER++M+ D IPPHLLAD   E D  +   P T
Sbjct: 10 MAGIDSNEWAMDAEEWERNEMEKD-IPPHLLADEDDEEDEMSTKFPAT 56

[Close]

BLAST of Lsi07G001540 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERS--QMKN-DIIPPHLLADHQEHD 39
          MAGID NEW MDAEEW+ +  QM+N DIIPPHLLAD  E +
Sbjct: 10 MAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEEN 50

[Close]

BLAST of Lsi07G001540 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 6.3e-11
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFFRTW 60
          MAGI  NEW MDAEEWER++++ND +PPHLLAD  + D N V+S ++N+ FP AGFF + 
Sbjct: 10 MAGITSNEWAMDAEEWERNEIEND-VPPHLLADEDDDDDN-VTSTVSNYSFPVAGFFDSL 69

Query: 61 RQK 64
          R++
Sbjct: 70 RRE 70

[Close]

BLAST of Lsi07G001540 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQEHDHNAVSSPITNFDFPAAGFF 58
          MAGI  NEW MDAEEWER++++ND +PPHLLAD  + D N V+S ++N+ FP AGFF
Sbjct: 10 MAGITSNEWAMDAEEWERNEIEND-VPPHLLADEDDDDDN-VTSTVSNYSFPVAGFF 64

[Close]

BLAST of Lsi07G001540 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-09
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRT 60
          MAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  
Sbjct: 10 MAGIDSNEWGMDAQEWERNEI--DVVPPHLLADEEDDEDGEYVTSTISNYCFRVDGSFGG 69

Query: 61 WRQK 64
          WR++
Sbjct: 70 WRRR 71

[Close]

BLAST of Lsi07G001540 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-09
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADHQ-EHDHNAVSSPITNFDFPAAGFFRT 60
          MAGID NEW MDA+EWER+++  D++PPHLLAD + + D   V+S I+N+ F   G F  
Sbjct: 10 MAGIDSNEWGMDAQEWERNEI--DVVPPHLLADEEDDEDGEYVTSTISNYCFRVDGSFGG 69

Query: 61 WRQK 64
          WR++
Sbjct: 70 WRRR 71

[Close]

BLAST of Lsi07G001540 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-05
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1  MAGIDLNEWNMDAEEWERSQMKNDIIPPHLLADH-QEHDHNAVSSPIT 48
          MAGID NEW MDAEEWER++M+ D IPPHLLAD   E D  +   P T
Sbjct: 10 MAGIDSNEWAMDAEEWERNEMEKD-IPPHLLADEDDEEDEMSTKFPAT 56

The following BLAST results are available for this feature:

BLAST of Lsi07G001540 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G001540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE7	5.7e-10	53.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5D3CZU0	3.7e-09	51.56	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TS68	3.7e-09	51.56	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1FX98	8.6e-06	62.50	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KU90	1.6e-04	68.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of Lsi07G001540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577295.1	6.3e-11	57.14	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015383.1	1.8e-10	61.40	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TYK16880.1	7.7e-09	51.56	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
KAA0044707.1	7.7e-09	51.56	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
XP_022943015.1	1.8e-05	62.50	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]

BLAST of Lsi07G001540 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G001540.1	Lsi07G001540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane