Lsi07G001300 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G001300
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein
Location	chr07: 1434645 .. 1437850 (+)
RNA-Seq Expression	Lsi07G001300
Synteny	Lsi07G001300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTAACGGAAGGGAGAAAATGTAGCCGAAGCAAGAAGAATCGGCTTTTGAATTGCGACTAATCTGTTTGATGTTTGACCTTACTGAAGGCCGTGCAAATCATTTGGTAATTTACTTCACTTTTCTCGAATCTAACTTTGTATAAGTTTTGCATTCATTTACTCATAATAAAATTATATAATCTATACATATACTGCATTGCGAAGAAATATATGAGAAACACATGGATGGATTTTTTCTCTTTTTTTTCTTGAGTTCGGCAATGCATTGGAGTGAGAATTCAAATGTCTAACCTCTTAGTGGAGGATACATACTTAAACATTTGAGTCATGCTCAAATTGGACTACATTTTTAATATAAATAAAGGGTATGTCGTTTAGAATGACTAATGGAGCGTTTGGGGTAAGGAATGAAATTGTTTAGTCGTGAGGCCCATAGCGTACAAAGTTAATAAGTCATGAACTCGATGTCTTTTAGTTGTGGCTTCTCCAAATTCCATGAGCCAAACAAAGAGTCTTCTTCCAACTCTTAATCCTTGTGACGTGCATGTTCTAAGTACTTAGAAATGTTTTTTTCCCTACTTAAAAATGCTTGGAGATAGTCATTCCAAATAGGTTCTTTGTGATCGAAATTTGTTTGTATATTTTAATATTTTTTTTCTTGTTAAGTTCAAGGAGTTATTGCAGGATGAGGATAGAACCATCAACTTTTAAAATTATAATTTATGTCTTATCCACCAAGTTATATTAGAATTTTTGTTCCTACAGTTTAATTAATTGGTTTCTATAAAGATATTTGTTTTTTACTATTTCAAATTTTCATTTATCATCTTATTTGATTTAAAGTATATAGCATGGGGAGTAGATTTACATCTAAAACTCATAAAAAGTATAGATGTCTAACTATTCAAATTTTATCGAAATTAATGTCATTTCACACATCCCACTAACACCTAAATTTCTAGAACAATAATATTTAATTGATATGAACTTGAAAATAAAAAAAGAAGAAAGTGAATAAGTCACGTGCAAATGCATGTGAAAAATGCACTAGTACATATATTAAGAAAGAGAGCAAACATTCCTTATAACATGTGGTGAAAACAGAAGCATTAAAAAAATAATCTCAATCCTTGAGACAATCCCAGTACAAATTTTCAGACCCCCCAAAAAAATAGCGTTGTTGTTGTGGGAACACAAGGAAAGGGAGGAAAAGACGTTTAATCCTATGCAACACCATGGCTGAAGAGAAACACTCGTTCTTTTCTTTTTCCTTTTCTTTTTCTTTTTCTTTTTCTTCGTTTCTACCATATGCAATCTAATTTTATTATAAGTAATTATATATTATCACTTTCATAATAAGATAGATTAAATTCAAACATCATCAGTCTAACATCTGAACATTAATCCTGGATTTTGAGTGTGTTGATGAAGCTCTTTCCTTCCGCAAGATCGTTGCTAGAGAGAAATTTGAGAAAATCATTGAAGCTGCTGTCTTTATACTTTATAGGATTTTGTTCATCCACAAGCTCTTCTGCAGGCTTCATTTTCTCGTCCATTCCCAAGCTGTGCAGACTGGTAATGGAGATTCTTGTTCTATCAGAATTGACAGTAGCTCTGTGGACGACTCCCTTGTAAAGGCCATTGGTCAGAACCTCAACATGATCGCCCACATGGACCTGCAGAGCACCATCAAGGTTTGGGACCATCTTCCATGTCCCATCAGCCGGGTCCATGATTTCAAGGCCCTGGCTGCTTTGGAGTACTGTGGTTATGCAACTGTAGTCTGTATGTGGTGGCAACCCAAGTGCGACCCCTGGCTGTGGACATGGCGGATAGCAGTTTACTGCCACTACTTGGACTCCTTCAGCCATTTTGCTGCTGAGGTATGTTGGACTTAAACTCAAGCTTTCAGTTATTGCTTCCATTATCTCTAGGCTTACTTTTCTCACCTCCTTGGTGTATTGTCCCATCTTTTCCCTGAAACGGTTGTACATATATATATATATAATGTTTATATATATATACATACATATAATCACAAGGACATATCTCTGAAGAAAATATGCACCTAGGATTCTTATAAAATTTCAATTTATATGTGGTTTTCTTATAGTAAAAGATTAAATAATAGTTTTATTTTGGGGGGCCGGGTGGGCCAGTGATATTTTTTGATTTGTTGTTTAGAATATTCGTTAGTATTGATATTTTCATTCGAGACGTCAATATCCCACTCCGACTCTTGTCTGCAAGTAAAAAGTGCTTTCTCTAATTAATTGTCATGTTTTGATTGTCATTTATTGGTGTGCATTTGGACTCCTTTATTTATGGTTCATTGAAGAAGAAGAATGCCTCAATATTATGCTGAGTATGCATTAAAAAAATCCAAACTTTTAGACCATATTAAACGTTAGCGTATATAAATTAAAACCAACATTGTTAGCTGGAAATCAGCTGGTTCAAAGGCGGCAGCATATGCATATGCATAGCGGTGCTCTCTTTTGGCGGTTCAATTGTTTCATTGTATCTTTCTGTTGAATTTCTTTGAACAGTCTTCTCGTGTAGTGAAATTTGCATATGGTTAATCAGGAAGAGAAAAATAATGAAAATTAGTTCAGAAGTGGAGATGGAGAATTAAAATATTTAGTTACCTATAATTAAGTGGATTGGTGGGCCAGGAGTCTATCCAATCTTCCAACGGATGAGCATAGTGTTTGAGGAAGACTCTCCAAAACTTTATTTTATCTACTCCATCTTTCAAGCTTGTCCCATACCTGACTGCTTTGCAAACATCATCTGACTTATACTTCATCTTCTCCTTCAGTGGTAAGTTGAAGAACTCATTTGCTTGGCTGAGTGCTTCCTCCATCACCGTTTCACTGATTCCATGATTGATTATCTGAAGAGAAAAAAAAAAAGGATTTAAGTTCAGAGCTAATTGATATAAATAAATCTTTCCAAGGTTCCTGGATCAATACGAAGAATTTGAACTTGAACTAGCGTAGGTTGGTTGCTTGAAAACTTACCTGAAAGAAACCTAGGCTAATGCAAACTTTTCTGAGCTCTTCAATGGCAAGGGACCTTTGAACTGAATCATTTGATCTTAGAGAAGCCATGTCAATGATAGGAACAATGGCGATCTGGGGCGACAAACTCGGGCGGTGTGGGCCAGGAATCACATAAGCATTAGGAACATAGCTTAA

mRNA sequence

ATGGTGTGTGTTGATGAAGCTCTTTCCTTCCGCAAGATCGTTGCTAGAGAGAAATTTGAGAAAATCATTGAAGCTGCTGTCTTTATACTTTATAGGATTTTGTTCATCCACAAGCTCTTCTGCAGGCTTCATTTTCTCGTCCATTCCCAAGCTGTGCAGACTGGTAATGGAGATTCTTGTTCTATCAGAATTGACAGTAGCTCTGTGGACGACTCCCTTGTAAAGGCCATTGGTCAGAACCTCAACATGATCGCCCACATGGACCTGCAGAGCACCATCAAGGTTTGGGACCATCTTCCATGTCCCATCAGCCGGGTCCATGATTTCAAGGCCCTGGCTGCTTTGGAGTACTGTGGTTATGCAACTGTAGTCTGTATGTGGTGGCAACCCAAGTGCGACCCCTGGCTGTGGACATGGCGGATAGCAGTTTACTGCCACTACTTGGACTCCTTCAGCCATTTTGCTGCTGAGAGAAGCCATGTCAATGATAGGAACAATGGCGATCTGGGGCGACAAACTCGGGCGGTGTGGGCCAGGAATCACATAAGCATTAGGAACATAGCTTAA

Coding sequence (CDS)

ATGGTGTGTGTTGATGAAGCTCTTTCCTTCCGCAAGATCGTTGCTAGAGAGAAATTTGAGAAAATCATTGAAGCTGCTGTCTTTATACTTTATAGGATTTTGTTCATCCACAAGCTCTTCTGCAGGCTTCATTTTCTCGTCCATTCCCAAGCTGTGCAGACTGGTAATGGAGATTCTTGTTCTATCAGAATTGACAGTAGCTCTGTGGACGACTCCCTTGTAAAGGCCATTGGTCAGAACCTCAACATGATCGCCCACATGGACCTGCAGAGCACCATCAAGGTTTGGGACCATCTTCCATGTCCCATCAGCCGGGTCCATGATTTCAAGGCCCTGGCTGCTTTGGAGTACTGTGGTTATGCAACTGTAGTCTGTATGTGGTGGCAACCCAAGTGCGACCCCTGGCTGTGGACATGGCGGATAGCAGTTTACTGCCACTACTTGGACTCCTTCAGCCATTTTGCTGCTGAGAGAAGCCATGTCAATGATAGGAACAATGGCGATCTGGGGCGACAAACTCGGGCGGTGTGGGCCAGGAATCACATAAGCATTAGGAACATAGCTTAA

Protein sequence

MVCVDEALSFRKIVAREKFEKIIEAAVFILYRILFIHKLFCRLHFLVHSQAVQTGNGDSCSIRIDSSSVDDSLVKAIGQNLNMIAHMDLQSTIKVWDHLPCPISRVHDFKALAALEYCGYATVVCMWWQPKCDPWLWTWRIAVYCHYLDSFSHFAAERSHVNDRNNGDLGRQTRAVWARNHISIRNIA

Homology

[Close]

BLAST of Lsi07G001300 vs. ExPASy TrEMBL
Match: A0A0A0KXN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025090 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.7e-52
Identity = 95/114 (83.33%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 44  HFLVHSQAVQTGNGDSCSIRIDSSSVDDSLVKAIGQNLNMIAHMDLQSTIKVWDHLPCPI 103
           HFLVHSQA+QT +GDSCS+RIDS SVD+S VKAI +N +MIAHMDLQSTI +WDHLPCPI
Sbjct: 10  HFLVHSQAMQTCDGDSCSLRIDSCSVDNSFVKAIAKNFHMIAHMDLQSTINLWDHLPCPI 69

Query: 104 SRVHDFKALAALEYCGYATVVCMWWQPKCDPWLWTWRIAVYCHYLDSFSHFAAE 158
           S VHDFKALAAL+ CGYATVVCMWWQP+CDPWLWTW IA+YCHYLDSFSHFAAE
Sbjct: 70  SWVHDFKALAALKNCGYATVVCMWWQPECDPWLWTWGIAIYCHYLDSFSHFAAE 123

[Close]

BLAST of Lsi07G001300 vs. ExPASy TrEMBL
Match: A0A058ZWR3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00121 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 5   DEALSFRKIVAREKFEKIIEAAVFILYRILFIHKLFCRLHFLVHSQAVQTGNGDSCSIRI 64
           DEAL+  KI   ++ +++ EA    ++ ++  H+LFC  + L+H+Q V+  N D C + I
Sbjct: 35  DEALALCKISGGQEIQEMPEATHVRIHWLVLTHRLFCSAYLLIHAQTVEASNRDPCPLTI 94

Query: 65  DSSSVDDSLVKAIGQNLNMIAHMDLQSTIKV-WDHLPCPISRVHDFKALAAL 116
            +S VD + V+AI Q  +M++ ++LQ T+   +      I  +HD +A  AL
Sbjct: 95  QNSPVDQTCVQAIAQPFDMVSDVNLQGTVDFGYQFQRATILGIHDLEARRAL 146

[Close]

BLAST of Lsi07G001300 vs. ExPASy TrEMBL
Match: A0A5H2XM22 (2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_91S000400 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-07
Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 20  EKIIEAAVFILYRILFIHKLFCRLHFLVHSQAVQTGNGDSCSIRIDSSSVDDSLVKAIGQ 79
           +K+ EA +F+   +LF+H+ +CR +FLV  + V+T NG S  +  +  SV ++ V +I Q
Sbjct: 34  KKVSEAELFVRLWMLFVHEHWCRPYFLVQRKTVETYNGKSTFLSANCCSVKNTFVMSIAQ 93

Query: 80  NLNMIAHMDLQSTIKVWDHLPCPISRVHDFKALAALEYCGYATVV 125
           NL++++ ++ +S+    D LP  +  V D K    L+  GY  +V
Sbjct: 94  NLHLVSQLNQESSFDGRDRLPVAV-LVLDLKPWTTLKQDGYGAIV 137

[Close]

BLAST of Lsi07G001300 vs. ExPASy TrEMBL
Match: A0A5J9UDP5 (Uncharacterized protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_31490 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-04
Identity = 29/106 (27.36%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 14  VAREKFEKIIEAAVFILYRILFIHKLFCRLHFLVHSQAVQTGNGDSCSIRIDSSSVDDSL 73
           ++ +  E++ +AA+F+L  IL IHKL       +  + +       C  RI + ++ + L
Sbjct: 26  ISGKMVEEVTKAALFVLLGILLIHKLLGTCDLFMQCKTMNASYRYPCFFRIQNGTMHNCL 85

Query: 74  VKAIGQNLNMIAHMDLQSTIKVWDHLPCPISRVHDFKALAALEYCG 120
             AI Q  ++++ +D+Q   ++ DH P   + + +FKAL   E  G
Sbjct: 86  DSAIAQYFHVVSSVDIQCMRELLDHFPAVAAAISNFKALTTCEQDG 131

[Close]

BLAST of Lsi07G001300 vs. NCBI nr
Match: KCW46232.1 (hypothetical protein EUGRSUZ_K00121 [Eucalyptus grandis])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-08
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 0


Query: 5   DEALSFRKIVAREKFEKIIEAAVFILYRILFIHKLFCRLHFLVHSQAVQTGNGDSCSIRI 64
           DEAL+  KI   ++ +++ EA    ++ ++  H+LFC  + L+H+Q V+  N D C + I
Sbjct: 35  DEALALCKISGGQEIQEMPEATHVRIHWLVLTHRLFCSAYLLIHAQTVEASNRDPCPLTI 94

Query: 65  DSSSVDDSLVKAIGQNLNMIAHMDLQSTIKV-WDHLPCPISRVHDFKALAAL 116
            +S VD + V+AI Q  +M++ ++LQ T+   +      I  +HD +A  AL
Sbjct: 95  QNSPVDQTCVQAIAQPFDMVSDVNLQGTVDFGYQFQRATILGIHDLEARRAL 146

[Close]

BLAST of Lsi07G001300 vs. NCBI nr
Match: BBN67485.1 (2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein [Prunus dulcis])

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-06
Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 20  EKIIEAAVFILYRILFIHKLFCRLHFLVHSQAVQTGNGDSCSIRIDSSSVDDSLVKAIGQ 79
           +K+ EA +F+   +LF+H+ +CR +FLV  + V+T NG S  +  +  SV ++ V +I Q
Sbjct: 34  KKVSEAELFVRLWMLFVHEHWCRPYFLVQRKTVETYNGKSTFLSANCCSVKNTFVMSIAQ 93

Query: 80  NLNMIAHMDLQSTIKVWDHLPCPISRVHDFKALAALEYCGYATVV 125
           NL++++ ++ +S+    D LP  +  V D K    L+  GY  +V
Sbjct: 94  NLHLVSQLNQESSFDGRDRLPVAV-LVLDLKPWTTLKQDGYGAIV 137

[Close]

BLAST of Lsi07G001300 vs. NCBI nr
Match: TVU21823.1 (hypothetical protein EJB05_31490, partial [Eragrostis curvula])

HSP 1 Score: 55.1 bits (131), Expect = 7.7e-04
Identity = 29/106 (27.36%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 14  VAREKFEKIIEAAVFILYRILFIHKLFCRLHFLVHSQAVQTGNGDSCSIRIDSSSVDDSL 73
           ++ +  E++ +AA+F+L  IL IHKL       +  + +       C  RI + ++ + L
Sbjct: 26  ISGKMVEEVTKAALFVLLGILLIHKLLGTCDLFMQCKTMNASYRYPCFFRIQNGTMHNCL 85

Query: 74  VKAIGQNLNMIAHMDLQSTIKVWDHLPCPISRVHDFKALAALEYCG 120
             AI Q  ++++ +D+Q   ++ DH P   + + +FKAL   E  G
Sbjct: 86  DSAIAQYFHVVSSVDIQCMRELLDHFPAVAAAISNFKALTTCEQDG 131

The following BLAST results are available for this feature:

BLAST of Lsi07G001300 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G001300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXN7	1.7e-52	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025090 PE=4 SV=1	[more]
A0A058ZWR3	1.1e-08	33.04	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00121 PE=4 SV...	[more]
A0A5H2XM22	6.2e-07	33.33	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein OS=Prunus dulc...	[more]
A0A5J9UDP5	3.7e-04	27.36	Uncharacterized protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_31490...	[more]

BLAST of Lsi07G001300 vs. NCBI nr


Match Name	E-value	Identity	Description
KCW46232.1	2.3e-08	33.04	hypothetical protein EUGRSUZ_K00121 [Eucalyptus grandis]	[more]
BBN67485.1	1.3e-06	33.33	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein [Prunus dulcis...	[more]
TVU21823.1	7.7e-04	27.36	hypothetical protein EJB05_31490, partial [Eragrostis curvula]	[more]

BLAST of Lsi07G001300 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G001300.1	Lsi07G001300.1	mRNA