Lsi07G000880 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTCCTCTAAAACCCTAAAAAGAATGGGGGGTTTAGAGAAGGAAGGCAAGGCTTCTGAAGCTTCTCTTCGAAACCCTAGAAAGAAGCGCAAACAGCGGCCTCCAAACAAGCCTAAAAACGCCAAGAAGAGGAAGCCCGATGCGACCCACAATCAAGATGCCCATAACCCCACCAATGATAGTGAAAACAATGTATCTGAGGCACTTCCATTGGAGCCCTTCAGCTTTTTTCTGGAAGAGTTTCAGACGGCTAATGAAGTGCAGGTTTCTTCGCTTGAGTTTGAGTCCATGAAAGGTACTTTACTAATCTGGATCATATTCTCGTAACATCTTTGGAGTGTTTAATTGCTTTTGGCATTCTAATTAGCCGTTTTAGTAAAATGGTACTTGAAGTATGGTTGATAGAGCCTAATTGTGTGTGAACTAATCTGATTTTTTTTTTTATGATTGGAGAATTTTGTAGATAGATGTATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAGACCTTGGTGAAACATATCAAGGAAGCGTTTGGGTCATCGTGGAAAGAAGTTATTTGTAAAGGGGAACTCTTGGAAGGAAGGACTGAACCTGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCACTTAGGTCGATTGAACTTCTAAAGTAAGATGGAGACTGCTTTTCTGCTAGTATTGATATTTATGGAATGAGTGCCGCCTGCTTTTGTCTAACTTATTTTTATTCATCAGGGGTTTTCGATCCTTAACTAAAGAATGCCATGCTGTAAAGCTATTTTCAAAGCACATGAAGATTGAGGAACAGGTAGTTACAAGTTTCTGTTCATGCTCTTTTCTCTTTTAGATGATTCAGAGATACGAGTAACATATGTTTTTGTTGTTTAATAATGTTTCAAGTTTGTTTTGTTCACATATTTCGTCAATTGAATGCTTGTCGTATATCAACGCCATAGAGTTGGGATGATAATCGCTTACATTTTGCTAGCTGGAACAAGTGGGAAAAACTCCACGATATGTTTTTAGACTTCTAGAGTATTCAAAGTCGTATCTCTATTTTGAAACCCTCTTAGTTTCAAAATTTTGGGTTTGGGAGATGAAGATAATTCAAATAATCATCAGAGGCAAAAGCACTGCTGAATTTGATGGTTTGCACGTCAGTCTGATCCTGTATTTTTATAACTTTTGCTCTTAATTGTCCTGATTTCAGAACCTGCCGTTCTCTTTGTGCTTAGTTTTTGTTTTGATCTTCATGGTCACATAATTAATTATGAATAGTGTTTGTAGTATGCTGCTTTTCTTGATGAGCTTTGAAAGTCAAAGCAATGATTTAGCTTCTTGATTCTTGAACACATATCAAGTAACAATATTCTGCAATAGCGATCTGTGATTTTTATTGCTCTATTATTTTTTTAGAAACTGGGTGTCTTGGCCATTTACTGGGTTGCAAGTTATTTCATATTTTTGTGGTGAAGATGTGTTGTGCATCCGTCCTACTTGTTTACTTTATTGGGTTTGGGAAATGATGACAAGCTAGAAAAATCTCTCAGATGCAGCTGCTATGCTGAACTTGATATTTGCACGTCAGTCTGATCCCATATTCTCAATGACATTTGTCATTTCTGAGCTTCTGAATGCTAGACTTGTGTTTACTTGTCATATTTTTTGGTTTTTTAAATATCGATAAAGAAGAAGGTATTTTAGCATTTCCCTTCAACCTCTTGAAACAAACATTTACATCTATAACTTTTCCTGCTTTTAATTTTGTGTTTCCCATCATTCTTTAAGTTTTTGTACACCCATGTTATGCACAGATCTGTTATTTTTATATGAAATCGTCAGCTGAACTCCCAATCTTATAGTCAGCTGCCTGTGCTGGCTACAATTTTGTTTTCTTATTTTTATGTTTGGGAAATGATGACAAAATTGAAATGTTAAACAGAGGTAGATACTGTGCTGAACTCTATTGCACGTCAGTCTGATCCCTATAATTGTTTATTGGGTGTAATCTAAGCACTTACTATGGAAAGTATTTATTTCTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGAGATTCTGGGTTTTGTACTTCTGTTATGATTTGGATCATTATCCCAAATCCTCATATCTGCTGAATTGGCAATCAAAGATCCTTTTGAATTGGCCAAAATCCTTTTGATCAAACGAAACTGCACCTCCTCAGACCTGCATGTTGTCATAGTACTAGATTAGTATCATTCCAAGTGACATCTTATTTCAATTTTCTGAAACTGTCCGTAATGCAATCTTTTCAGCTGCATCATCATTTGATTTCTTAAAATCTACAGTTGTCAGTGTTGATTTCTTAAAATCTACAGTTGTCAGTGTTGGTTTTCAGTTGTGTGATTTTTATGGACGTGCTGAAGGGATTGACCATAAGTTTCTTGAACTGTTATTGTTTTTCCCTTTATGATGGGTGCAGGTACAGCTGTTGAAGAACCGTGTAAACATTGCGAGTGGTACACCGAGCAGGTTAGCTTTCAGTACTGGGTTTATCACTATTGGTTCAAGAGTTCCAGTTCTAGGATTTTGTTTCTGATAGGAGTTCTGTTGATTATGGGTGGAGTAAAATAAATATTGCAAAATCTACAACCTTCTTGCTCTGGATCTACCACCTCTTGCACTGATATTTATAGTTCATTTATTTTCTTTCCATTCATTTCTAAAGGTTGTCAACTGTTACACTGATCCTTCGTCACATTCTCTTCTGTATCAATTTTAGGATTAAAAAATTGATTGAAATTGAGGCCTTGGGGCTTTCAAGATTAGCAGTTATTGTGCTCGACGTTCAACCAGATGTTAAGGGATATTCTTTATTTTCACTTCCACAAGTCAGGTTTGAACCTCGTTTATAACTCCTCTCAATTTTCCTAATGTACGTTTAAATCTTTCGTTCTGTGCTCTTAGATTGTGAAAATACAAATTAAAAAAAAATGTTTTGGTTTAGATATGGAAAAATTGATCATTGGACTCTCGACATTCTTACTCATAAAATTCATATTGCAGAGATGAATTCTGGGATTTGTACAAGAGCTACTTACACCCACGAGTAGTCGAGGGCGAGCTGCGAATTTGCCTCTTTGGACCTTTACAACCTTCTCGTAAACGAAGGAAAAAAGAAGTTGCCAGTCCAGGTGAATAAAGTACCAACAAAGTTGAAACTTAGACCAGCGCTTCTGTTAATGTATCCTCAAATTTATCAATTCTCTCAAATTAATTTAATCTCTTGATCGTTTTTCCCTGCCCTCCATTCCTGTATTCCAATTTGGTTGGGTTGTACCAAAATTTTGCAACCTGAGCTGAGTGCCCTATTGTTGTAGTTTTGCTTATAGTTACCGAAATATATCTGAAAATGGTCTACTTTTCTTGAAGTCAGAGCTATGTGAAACCTTATACCGAAGGTGGTGTTGTACATTTTTTTTATCTCCCATTTCAAAATATATAATAACATTTTTCCCCATAAATTGATGAAATACAAATATAATCCCAGGTTTAGCTTGGCTGTGTATGGGGATTTCTGTACAGTAGCAAATTAGAGACTTAAATGAGATTGACTCAATTTTG CTTCCTCTAAAACCCTAAAAAGAATGGGGGGTTTAGAGAAGGAAGGCAAGGCTTCTGAAGCTTCTCTTCGAAACCCTAGAAAGAAGCGCAAACAGCGGCCTCCAAACAAGCCTAAAAACGCCAAGAAGAGGAAGCCCGATGCGACCCACAATCAAGATGCCCATAACCCCACCAATGATAGTGAAAACAATGTATCTGAGGCACTTCCATTGGAGCCCTTCAGCTTTTTTCTGGAAGAGTTTCAGACGGCTAATGAAGTGCAGGTTTCTTCGCTTGAGTTTGAGTCCATGAAAGATAGATGTATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAGACCTTGGTGAAACATATCAAGGAAGCGTTTGGGTCATCGTGGAAAGAAGTTATTTGTAAAGGGGAACTCTTGGAAGGAAGGACTGAACCTGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCACTTAGGTCGATTGAACTTCTAAAGGGTTTTCGATCCTTAACTAAAGAATGCCATGCTGTAAAGCTATTTTCAAAGCACATGAAGATTGAGGAACAGGTACAGCTGTTGAAGAACCGTGTAAACATTGCGAGTGGTACACCGAGCAGGATTAAAAAATTGATTGAAATTGAGGCCTTGGGGCTTTCAAGATTAGCAGTTATTGTGCTCGACGTTCAACCAGATGTTAAGGGATATTCTTTATTTTCACTTCCACAAGTCAGAGATGAATTCTGGGATTTGTACAAGAGCTACTTACACCCACGAGTAGTCGAGGGCGAGCTGCGAATTTGCCTCTTTGGACCTTTACAACCTTCTCGTAAACGAAGGAAAAAAGAAGTTGCCAGTCCAGGTGAATAAAGTACCAACAAAGTTGAAACTTAGACCAGCGCTTCTGTTAATGTATCCTCAAATTTATCAATTCTCTCAAATTAATTTAATCTCTTGATCGTTTTTCCCTGCCCTCCATTCCTGTATTCCAATTTGGTTGGGTTGTACCAAAATTTTGCAACCTGAGCTGAGTGCCCTATTGTTGTAGTTTTGCTTATAGTTACCGAAATATATCTGAAAATGGTCTACTTTTCTTGAAGTCAGAGCTATGTGAAACCTTATACCGAAGGTGGTGTTGTACATTTTTTTTATCTCCCATTTCAAAATATATAATAACATTTTTCCCCATAAATTGATGAAATACAAATATAATCCCAGGTTTAGCTTGGCTGTGTATGGGGATTTCTGTACAGTAGCAAATTAGAGACTTAAATGAGATTGACTCAATTTTG ATGGGGGGTTTAGAGAAGGAAGGCAAGGCTTCTGAAGCTTCTCTTCGAAACCCTAGAAAGAAGCGCAAACAGCGGCCTCCAAACAAGCCTAAAAACGCCAAGAAGAGGAAGCCCGATGCGACCCACAATCAAGATGCCCATAACCCCACCAATGATAGTGAAAACAATGTATCTGAGGCACTTCCATTGGAGCCCTTCAGCTTTTTTCTGGAAGAGTTTCAGACGGCTAATGAAGTGCAGGTTTCTTCGCTTGAGTTTGAGTCCATGAAAGATAGATGTATTCTGGGTCCTCCTGAAAGTTCAGTTCAGGATGATAAGACCTTGGTGAAACATATCAAGGAAGCGTTTGGGTCATCGTGGAAAGAAGTTATTTGTAAAGGGGAACTCTTGGAAGGAAGGACTGAACCTGGCAGTCCTGCTGTTCTTATAATCAGCACATCTGCACTTAGGTCGATTGAACTTCTAAAGGGTTTTCGATCCTTAACTAAAGAATGCCATGCTGTAAAGCTATTTTCAAAGCACATGAAGATTGAGGAACAGGTACAGCTGTTGAAGAACCGTGTAAACATTGCGAGTGGTACACCGAGCAGGATTAAAAAATTGATTGAAATTGAGGCCTTGGGGCTTTCAAGATTAGCAGTTATTGTGCTCGACGTTCAACCAGATGTTAAGGGATATTCTTTATTTTCACTTCCACAAGTCAGAGATGAATTCTGGGATTTGTACAAGAGCTACTTACACCCACGAGTAGTCGAGGGCGAGCTGCGAATTTGCCTCTTTGGACCTTTACAACCTTCTCGTAAACGAAGGAAAAAAGAAGTTGCCAGTCCAGGTGAATAA MGGLEKEGKASEASLRNPRKKRKQRPPNKPKNAKKRKPDATHNQDAHNPTNDSENNVSEALPLEPFSFFLEEFQTANEVQVSSLEFESMKDRCILGPPESSVQDDKTLVKHIKEAFGSSWKEVICKGELLEGRTEPGSPAVLIISTSALRSIELLKGFRSLTKECHAVKLFSKHMKIEEQVQLLKNRVNIASGTPSRIKKLIEIEALGLSRLAVIVLDVQPDVKGYSLFSLPQVRDEFWDLYKSYLHPRVVEGELRICLFGPLQPSRKRRKKEVASPGE Homology
BLAST of Lsi07G000880 vs. ExPASy Swiss-Prot
Match: Q5FVR6 (Protein CMSS1 OS=Rattus norvegicus OX=10116 GN=Cmss1 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.8e-13 Identity = 47/147 (31.97%), Postives = 86/147 (58.50%), Query Frame = 0
BLAST of Lsi07G000880 vs. ExPASy Swiss-Prot
Match: Q9CZT6 (Protein CMSS1 OS=Mus musculus OX=10090 GN=Cmss1 PE=2 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 3.7e-13 Identity = 48/147 (32.65%), Postives = 86/147 (58.50%), Query Frame = 0
BLAST of Lsi07G000880 vs. ExPASy Swiss-Prot
Match: Q5XJK9 (Protein CMSS1 OS=Danio rerio OX=7955 GN=cmss1 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 5.9e-11 Identity = 78/263 (29.66%), Postives = 123/263 (46.77%), Query Frame = 0
BLAST of Lsi07G000880 vs. ExPASy Swiss-Prot
Match: Q9BQ75 (Protein CMSS1 OS=Homo sapiens OX=9606 GN=CMSS1 PE=1 SV=2) HSP 1 Score: 68.9 bits (167), Expect = 1.0e-10 Identity = 72/259 (27.80%), Postives = 122/259 (47.10%), Query Frame = 0
BLAST of Lsi07G000880 vs. ExPASy Swiss-Prot
Match: Q68EV5 (Protein CMSS1 OS=Xenopus laevis OX=8355 GN=cmss1 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10 Identity = 79/269 (29.37%), Postives = 123/269 (45.72%), Query Frame = 0
BLAST of Lsi07G000880 vs. ExPASy TrEMBL
Match: A0A5A7TR86 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 PE=4 SV=1) HSP 1 Score: 467.6 bits (1202), Expect = 3.6e-128 Identity = 244/274 (89.05%), Postives = 254/274 (92.70%), Query Frame = 0
BLAST of Lsi07G000880 vs. ExPASy TrEMBL
Match: A0A1S3BYM0 (protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1) HSP 1 Score: 465.7 bits (1197), Expect = 1.4e-127 Identity = 243/274 (88.69%), Postives = 253/274 (92.34%), Query Frame = 0
BLAST of Lsi07G000880 vs. ExPASy TrEMBL
Match: A0A5D3CZG6 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 PE=4 SV=1) HSP 1 Score: 463.4 bits (1191), Expect = 6.8e-127 Identity = 242/274 (88.32%), Postives = 252/274 (91.97%), Query Frame = 0
BLAST of Lsi07G000880 vs. ExPASy TrEMBL
Match: A0A0A0KUA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1) HSP 1 Score: 462.2 bits (1188), Expect = 1.5e-126 Identity = 237/274 (86.50%), Postives = 254/274 (92.70%), Query Frame = 0
BLAST of Lsi07G000880 vs. ExPASy TrEMBL
Match: A0A6J1IXV6 (protein CMS1 OS=Cucurbita maxima OX=3661 GN=LOC111479452 PE=4 SV=1) HSP 1 Score: 458.4 bits (1178), Expect = 2.2e-125 Identity = 238/283 (84.10%), Postives = 257/283 (90.81%), Query Frame = 0
BLAST of Lsi07G000880 vs. NCBI nr
Match: XP_038906109.1 (protein CMS1 isoform X3 [Benincasa hispida]) HSP 1 Score: 478.0 bits (1229), Expect = 5.5e-131 Identity = 245/277 (88.45%), Postives = 260/277 (93.86%), Query Frame = 0
BLAST of Lsi07G000880 vs. NCBI nr
Match: KAA0044636.1 (protein CMSS1 [Cucumis melo var. makuwa]) HSP 1 Score: 467.6 bits (1202), Expect = 7.4e-128 Identity = 244/274 (89.05%), Postives = 254/274 (92.70%), Query Frame = 0
BLAST of Lsi07G000880 vs. NCBI nr
Match: XP_008453922.1 (PREDICTED: protein CMSS1 [Cucumis melo]) HSP 1 Score: 465.7 bits (1197), Expect = 2.8e-127 Identity = 243/274 (88.69%), Postives = 253/274 (92.34%), Query Frame = 0
BLAST of Lsi07G000880 vs. NCBI nr
Match: TYK16952.1 (protein CMSS1 [Cucumis melo var. makuwa]) HSP 1 Score: 463.4 bits (1191), Expect = 1.4e-126 Identity = 242/274 (88.32%), Postives = 252/274 (91.97%), Query Frame = 0
BLAST of Lsi07G000880 vs. NCBI nr
Match: XP_004152079.1 (protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_014754 [Cucumis sativus]) HSP 1 Score: 462.2 bits (1188), Expect = 3.1e-126 Identity = 237/274 (86.50%), Postives = 254/274 (92.70%), Query Frame = 0
BLAST of Lsi07G000880 vs. TAIR 10
Match: AT2G43110.1 (unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). ) HSP 1 Score: 257.7 bits (657), Expect = 1.1e-68 Identity = 145/275 (52.73%), Postives = 190/275 (69.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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