Lsi07G000210 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi07G000210
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Ciliary neurotrophic factor
Location	chr07: 266209 .. 269176 (-)
RNA-Seq Expression	Lsi07G000210
Synteny	Lsi07G000210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTGTTGCCGGAGAAAGAAAGTGGAGAGGAAAAAGAAGAAAAAGAGATGGCGGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGACTGATGGAGGAGAACGACAACAGCACCGCCTCTCATCGGAGCTCAGGCGCCGGCGGCGACGACGACGATCTGCAACTTCTTTCCCGATTACTCTCTCAGGTTAGATTACGTTAATCAATTCATACGTATCAGTTTTGCTTCAAAATAATATAAAAAATGGTTTATTTATTAAATTTTGAATTTTAAAATATCTTTCGATTGTTTTATTTACTATTAAGATTCAAATGTTTTGTGATTTAATTTCTTTCATAATTATTCAACAAAATAAAATCTTGGGAGAGTCGAATTCTGGAGAGTTCAAGTTTATTGTTAATCAAGGTTTTAAATAATGTCCATGATTACGAAAATAACGATATTTCTGGAAAAATAAAACTATATCTATATATCCATCTAATATCAATATATATATAGGGATATTTTGTTACATTTCATACGTTTTTCTATTATATAAAACAAGTTTGAAATATGAAAATATCAAGATCTCGATTTTATGAAAATATTGATATCGATGGAAATTTTAGGAACTTTATGGAAATTGAAGAAAATTGTTATAATTAGTTAATGGAACTTTGATGATAACTTAATTAAACTATAATTGTCCATTTCTAATAATCTATCACGGGTTGACTGGTTGTAAAAAATGAGATATAGTCTAAATAAATGACTTCAAGGGTTTAATTTATGAGTTTTCTTGACACTCAAATGTTGTAAGGTCAAATATAGGTTTTTTTGTGGTTTTTTCAAATTTAATTTCTTTAAAAATGAAAGTTTCAAATTGAAATTAAAGATGGAAATTTAGAAAAGTAGCACATTCAACAAGCTTCATTGGAAATGGTATTAACATGAAAAACTATATAATTGTGTGTAATCAAGATTATAGAATAAAACAAAATAAATTTTTTCTTGAAATTTTGAAATTTTGGATGTAAATTTTTCACCATGGTTGATGTAAACACAAGAATTGAGAATTGAGAATGAAATCATTATCAATCTCTCCTTTCTTATCTTTTCTTTCGTTCTCAAGATACTGTTTTTAAGGCCACTAAGATACCATAACCAAGTCCCAATAACATAATTAAATCGATTAAAACCTCATAGGTTGTTTTCAAATCGATGTCTATAATATATATATATATATATATATATATATATATATATTTAATTTAGACTTTGATAGGAATCCACCCTGGAGTACCAAGCTTTATCTAAACAATCATTTACCAAGAGCACCACTAAAAAGGAAGTGGACTTTAATCAAATCTGTAATAATCATTTCTTTGGTACCTTTAGCTATTTGTTTTTCTAATTACACATTTAACCTAAATTTTTAAATAACTAACTTATATCTGGAATCGCTAATGACGGGACATGGAAATTGAAATAACATTTTTATCTCCATTGGTAACCATTTAATTTTAATTTTTAATCTTTTATAACTAGCCATGAAAACACCAATTTCACCTTTAAATTTCTTGTTTTGTCATCTACTTTCTATCAATGTTTTCAAAAATCAAGCCAAAATTTAAAAACTAAAAATAGTACTTTTTAAAAACTTAATTTTATTTTTGAAATTTGACTAAAATTTCAACTGCAATGCAAACCAAAACCATAGTAAGAAAATGTCAAAAGTGGAAATTGAAAGTTGATTGGCAATGGTCACTAGAAACAGTGGTCGGAGAGTGCCCAAATTAGGGAGAAATTACTCAAAATTCATTTTTCTAAAAGTTGGTTTAAGTATTTATCTTCTTAAACCAACTTATTTTTTCAAAATTCATTTTAAGTGGTTGCCAAAAACATGAATTTTTTTTCAAAATAACTTATTTTTTAATTTAAACACTTGAAAAGGTATTCCAAAATCTCAAAAACAAACCAAATGGTTAACCAGGCCTAAATAAGAAATAGGTTTGATTTTTCTCTGTAACACAAAGCTGAGAGAACCAAAGAGATAAGAGAATAGAGATTATCCACAGTTTATTTTAATCTTCCAGCTTGCAGCCAAATGGTCGAAATCCTTTACTTCATTTTCTAATTGGGGAACAAGTAATTTTAGTCCCACAAATAATTGGCCTTTACTGCAATTAACAGGTGGAATCAACAAGAGAAGAACAGAGGCTCAACCACTCCCAAATCTCATCTCAGCAAGAGGATGAGAAAATAATTGAGACAGACTTAGAGCCTCAAAGTGAAAATGTGGAAAGAAATGGAAGCATAGTGAAAACAGAGAAGGAGATCGTGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTTATAACTCACTGCCTTGTTTCAGCAATGATTATCCTCACTGTTGCTTGGCAAATCTCTGAGGTGTCTTTCATTTTGAAACTCAGAGATGGCTTGAGCAATCCATTCAAATCCCTGGGTACAATTCTGAAAAGGAAGACAACTTCAGCAATACAACAACAGATTGAAGCTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCATGTGACCCTACCAGAGTTTGACTTGGAAATTAATACCTGATTTATTGCCACCAATCAATCATCCACAAAAACAGTAGCTTCATCAAGTTGTTCCATTGGATGTGCAGCTCTTTGATTTAATTTTCTAGGCACAACCAAACATTTCAACAACTTTGTATCTATATATTAGTTGTTTAAAGGAAAAGATCACATTGAAACCCTGTATTTTTTGGGCGTAGAGTGCCGGTACTGCTTTCATTTCGGACATTCATATTTCAATTTCCATGACGTAGAAGTTTAAAGTTGTGATTTTCGACATGTATAATACCATATAGTACACTTGCATTTGAATAGATAGAATAGGGACTATTGAGCAAATCACTTGAATTTGAAGAAAGTATCTATTTCATCAA

mRNA sequence

ATGATTCTGTTGCCGGAGAAAGAAAGTGGAGAGGAAAAAGAAGAAAAAGAGATGGCGGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGACTGATGGAGGAGAACGACAACAGCACCGCCTCTCATCGGAGCTCAGGCGCCGGCGGCGACGACGACGATCTGCAACTTCTTTCCCGATTACTCTCTCAGGTGGAATCAACAAGAGAAGAACAGAGGCTCAACCACTCCCAAATCTCATCTCAGCAAGAGGATGAGAAAATAATTGAGACAGACTTAGAGCCTCAAAGTGAAAATGTGGAAAGAAATGGAAGCATAGTGAAAACAGAGAAGGAGATCGTGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTTATAACTCACTGCCTTGTTTCAGCAATGATTATCCTCACTGTTGCTTGGCAAATCTCTGAGGTGTCTTTCATTTTGAAACTCAGAGATGGCTTGAGCAATCCATTCAAATCCCTGGGTACAATTCTGAAAAGGAAGACAACTTCAGCAATACAACAACAGATTGAAGCTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCATGTGACCCTACCAGAGTTTGACTTGGAAATTAATACCTGATTTATTGCCACCAATCAATCATCCACAAAAACAGTAGCTTCATCAAGTTGTTCCATTGGATGTGCAGCTCTTTGATTTAATTTTCTAGGCACAACCAAACATTTCAACAACTTTGTATCTATATATTAGTTGTTTAAAGGAAAAGATCACATTGAAACCCTGTATTTTTTGGGCGTAGAGTGCCGGTACTGCTTTCATTTCGGACATTCATATTTCAATTTCCATGACGTAGAAGTTTAAAGTTGTGATTTTCGACATGTATAATACCATATAGTACACTTGCATTTGAATAGATAGAATAGGGACTATTGAGCAAATCACTTGAATTTGAAGAAAGTATCTATTTCATCAA

Coding sequence (CDS)

ATGATTCTGTTGCCGGAGAAAGAAAGTGGAGAGGAAAAAGAAGAAAAAGAGATGGCGGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAGACTGATGGAGGAGAACGACAACAGCACCGCCTCTCATCGGAGCTCAGGCGCCGGCGGCGACGACGACGATCTGCAACTTCTTTCCCGATTACTCTCTCAGGTGGAATCAACAAGAGAAGAACAGAGGCTCAACCACTCCCAAATCTCATCTCAGCAAGAGGATGAGAAAATAATTGAGACAGACTTAGAGCCTCAAAGTGAAAATGTGGAAAGAAATGGAAGCATAGTGAAAACAGAGAAGGAGATCGTGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTTATAACTCACTGCCTTGTTTCAGCAATGATTATCCTCACTGTTGCTTGGCAAATCTCTGAGGTGTCTTTCATTTTGAAACTCAGAGATGGCTTGAGCAATCCATTCAAATCCCTGGGTACAATTCTGAAAAGGAAGACAACTTCAGCAATACAACAACAGATTGAAGCTACTGAATTGCCTCATCTTAATATGCCTGCCCTACCTCATGTGACCCTACCAGAGTTTGACTTGGAAATTAATACCTGA

Protein sequence

MILLPEKESGEEKEEKEMAEAAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETDLEPQSENVERNGSIVKTEKEIVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILKLRDGLSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFDLEINT

Homology

[Close]

BLAST of Lsi07G000210 vs. ExPASy TrEMBL
Match: A0A1S3BXR6 (uncharacterized protein LOC103494562 OS=Cucumis melo OX=3656 GN=LOC103494562 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.0e-63
Identity = 148/186 (79.57%), Postives = 162/186 (87.10%), Query Frame = 0


Query: 21  AAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHS 80
           A EEMELISLAIRRLMEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH 
Sbjct: 5   AEEEMELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH- 64

Query: 81  QISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCLVSAMII 140
              S+QED +IIET+LE + E NVER+   VKTE EIVKELKEVK+QNF+THCLVSAMII
Sbjct: 65  --YSKQEDGEIIETNLEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMII 124

Query: 141 LTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHV 200
           LTVAWQISEVSFILKLRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV
Sbjct: 125 LTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHV 184

Query: 201 TLPEFD 205
           +LP+FD
Sbjct: 185 SLPDFD 186

[Close]

BLAST of Lsi07G000210 vs. ExPASy TrEMBL
Match: A0A0A0KTW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012410 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 4.4e-62
Identity = 153/192 (79.69%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 18  MAEAAE-EMELISLAIRRLMEENDNSTASHRSS--GAGGDDDDLQLLSRLLSQVESTREE 77
           MAEAA  EMELISLAIRRLMEEN + T SHRSS   A  D DD+QLLSRLLS+VESTR E
Sbjct: 1   MAEAAAVEMELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGE 60

Query: 78  QRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCL 137
           QRLNH    S+QED +IIET+LE + E NVER+   +KTE EIVKELKEVK+QNFITHCL
Sbjct: 61  QRLNH----SKQEDGEIIETNLEAERENNVERSEMKLKTE-EIVKELKEVKKQNFITHCL 120

Query: 138 VSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNM 197
           VSAMIILTVAWQISEVSFILKLRDG LSNPFKSL TILKRKTTSAIQ QIEATELPHLN+
Sbjct: 121 VSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNI 180

Query: 198 PALPHVTLPEFD 205
           PALPHVTLP+FD
Sbjct: 181 PALPHVTLPDFD 187

[Close]

BLAST of Lsi07G000210 vs. ExPASy TrEMBL
Match: A0A5A7TSP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003210 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.7e-62
Identity = 145/182 (79.67%), Postives = 159/182 (87.36%), Query Frame = 0


Query: 25  MELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISS 84
           MELISLAIRRLMEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH    S
Sbjct: 1   MELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH---YS 60

Query: 85  QQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCLVSAMIILTVA 144
           +QED +IIET+LE + E NVER+   VKTE EIVKELKEVK+QNF+THCLVSAMIILTVA
Sbjct: 61  KQEDGEIIETNLEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMIILTVA 120

Query: 145 WQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPE 204
           WQISEVSFILKLRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+
Sbjct: 121 WQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHVSLPD 178

[Close]

BLAST of Lsi07G000210 vs. ExPASy TrEMBL
Match: A0A5D3CZN3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001570 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.6e-56
Identity = 134/171 (78.36%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 36  MEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISSQQEDEKIIETD 95
           MEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH    S+QED +IIET+
Sbjct: 1   MEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH---YSKQEDGEIIETN 60

Query: 96  LEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCLVSAMIILTVAWQISEVSFILK 155
           LE + E NVER+   VKTE EIVKELKEVK+QNF+THCLVSAMIILTVAWQISEVSFILK
Sbjct: 61  LEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMIILTVAWQISEVSFILK 120

Query: 156 LRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPEFD 205
           LRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+FD
Sbjct: 121 LRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHVSLPDFD 167

[Close]

BLAST of Lsi07G000210 vs. ExPASy TrEMBL
Match: A0A6J1IS75 (uncharacterized protein LOC111479485 OS=Cucurbita maxima OX=3661 GN=LOC111479485 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.0e-51
Identity = 131/189 (69.31%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 18  MAE-AAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQR 77
           MAE AAEEMELISLAIRRLMEE +N T SHRSSG     +DLQ LSRLLSQVESTRE+ R
Sbjct: 1   MAEAAAEEMELISLAIRRLMEEKNNRTGSHRSSGG----NDLQFLSRLLSQVESTREQGR 60

Query: 78  LNHSQISSQQEDEKIIETDLEPQSENVERNGSIVKTEKEIVKELKEVKRQNFITHCLVSA 137
             HS     Q+D+KII+ +L               TEKEIVKE+KEVKRQNFITHCLVSA
Sbjct: 61  RKHS-----QQDDKIIQKNL---------------TEKEIVKEIKEVKRQNFITHCLVSA 120

Query: 138 MIILTVAWQISEVSFILKLRDGLSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALP 197
           M++LTVAWQ+SEVSFILKLRDGLSNPFKSL  ILKR TTSAIQ +IEATEL     PALP
Sbjct: 121 MVVLTVAWQVSEVSFILKLRDGLSNPFKSLARILKRNTTSAIQHKIEATEL-----PALP 160

Query: 198 HVTLPEFDL 206
           HV LP+F L
Sbjct: 181 HVNLPDFHL 160

[Close]

BLAST of Lsi07G000210 vs. NCBI nr
Match: XP_038895500.1 (uncharacterized protein LOC120083719 [Benincasa hispida])

HSP 1 Score: 300.1 bits (767), Expect = 1.5e-77
Identity = 169/190 (88.95%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 18  MAEAAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRL 77
           MAEA EEMELISLAIRRLMEE+DN TASHRSSGA  D  DLQLLSRLLSQVESTREEQRL
Sbjct: 1   MAEATEEMELISLAIRRLMEEDDNRTASHRSSGA--DAHDLQLLSRLLSQVESTREEQRL 60

Query: 78  NHSQISSQQEDEKIIETDLEPQSENVERNG-SIVKTEKEIVKELKEVKRQNFITHCLVSA 137
           NHSQIS+QQ+DEKIIET+LEPQSENVER+G + VK EK IVKELKEVKRQNFITHCLVSA
Sbjct: 61  NHSQISAQQKDEKIIETELEPQSENVERSGRNRVKIEKVIVKELKEVKRQNFITHCLVSA 120

Query: 138 MIILTVAWQISEVSFILKLRDGLSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALP 197
           MIILTVAWQ+SEVSFILKLR+GLSNPFKSLGTILKRKTTSAIQ QIEATELPHLNMPALP
Sbjct: 121 MIILTVAWQVSEVSFILKLRNGLSNPFKSLGTILKRKTTSAIQHQIEATELPHLNMPALP 180

Query: 198 HVTLPEFDLE 207
           HV LPEFDL+
Sbjct: 181 HVNLPEFDLD 188

[Close]

BLAST of Lsi07G000210 vs. NCBI nr
Match: XP_008454012.1 (PREDICTED: uncharacterized protein LOC103494562 [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 6.3e-63
Identity = 148/186 (79.57%), Postives = 162/186 (87.10%), Query Frame = 0


Query: 21  AAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHS 80
           A EEMELISLAIRRLMEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH 
Sbjct: 5   AEEEMELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH- 64

Query: 81  QISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCLVSAMII 140
              S+QED +IIET+LE + E NVER+   VKTE EIVKELKEVK+QNF+THCLVSAMII
Sbjct: 65  --YSKQEDGEIIETNLEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMII 124

Query: 141 LTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHV 200
           LTVAWQISEVSFILKLRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV
Sbjct: 125 LTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHV 184

Query: 201 TLPEFD 205
           +LP+FD
Sbjct: 185 SLPDFD 186

[Close]

BLAST of Lsi07G000210 vs. NCBI nr
Match: XP_004152113.1 (uncharacterized protein LOC101214522 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 9.0e-62
Identity = 153/192 (79.69%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 18  MAEAAE-EMELISLAIRRLMEENDNSTASHRSS--GAGGDDDDLQLLSRLLSQVESTREE 77
           MAEAA  EMELISLAIRRLMEEN + T SHRSS   A  D DD+QLLSRLLS+VESTR E
Sbjct: 1   MAEAAAVEMELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGE 60

Query: 78  QRLNHSQISSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCL 137
           QRLNH    S+QED +IIET+LE + E NVER+   +KTE EIVKELKEVK+QNFITHCL
Sbjct: 61  QRLNH----SKQEDGEIIETNLEAERENNVERSEMKLKTE-EIVKELKEVKKQNFITHCL 120

Query: 138 VSAMIILTVAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNM 197
           VSAMIILTVAWQISEVSFILKLRDG LSNPFKSL TILKRKTTSAIQ QIEATELPHLN+
Sbjct: 121 VSAMIILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNI 180

Query: 198 PALPHVTLPEFD 205
           PALPHVTLP+FD
Sbjct: 181 PALPHVTLPDFD 187

[Close]

BLAST of Lsi07G000210 vs. NCBI nr
Match: KAA0044571.1 (uncharacterized protein E6C27_scaffold46G003210 [Cucumis melo var. makuwa])

HSP 1 Score: 247.3 bits (630), Expect = 1.2e-61
Identity = 145/182 (79.67%), Postives = 159/182 (87.36%), Query Frame = 0


Query: 25  MELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNHSQISS 84
           MELISLAIRRLMEEN N T SHRSS    D DD+QLLS+LLS+VESTREEQRLNH    S
Sbjct: 1   MELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH---YS 60

Query: 85  QQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCLVSAMIILTVA 144
           +QED +IIET+LE + E NVER+   VKTE EIVKELKEVK+QNF+THCLVSAMIILTVA
Sbjct: 61  KQEDGEIIETNLEAEGENNVERSEIKVKTE-EIVKELKEVKKQNFVTHCLVSAMIILTVA 120

Query: 145 WQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTLPE 204
           WQISEVSFILKLRDG LSNPFKSLGTILKRKTTSAIQ QIEATELP LN+PA+PHV+LP+
Sbjct: 121 WQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHVSLPD 178

[Close]

BLAST of Lsi07G000210 vs. NCBI nr
Match: KAE8649098.1 (hypothetical protein Csa_015237 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-60
Identity = 147/184 (79.89%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 25  MELISLAIRRLMEENDNSTASHRSS--GAGGDDDDLQLLSRLLSQVESTREEQRLNHSQI 84
           MELISLAIRRLMEEN + T SHRSS   A  D DD+QLLSRLLS+VESTR EQRLNH   
Sbjct: 1   MELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGEQRLNH--- 60

Query: 85  SSQQEDEKIIETDLEPQSE-NVERNGSIVKTEKEIVKELKEVKRQNFITHCLVSAMIILT 144
            S+QED +IIET+LE + E NVER+   +KTE EIVKELKEVK+QNFITHCLVSAMIILT
Sbjct: 61  -SKQEDGEIIETNLEAERENNVERSEMKLKTE-EIVKELKEVKKQNFITHCLVSAMIILT 120

Query: 145 VAWQISEVSFILKLRDG-LSNPFKSLGTILKRKTTSAIQQQIEATELPHLNMPALPHVTL 204
           VAWQISEVSFILKLRDG LSNPFKSL TILKRKTTSAIQ QIEATELPHLN+PALPHVTL
Sbjct: 121 VAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNIPALPHVTL 179

[Close]

BLAST of Lsi07G000210 vs. TAIR 10
Match: AT1G27300.1 (unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-15
Identity = 56/151 (37.09%), Postives = 90/151 (59.60%), Query Frame = 0


Query: 20  EAAEEMELISLAIRRLMEENDNSTASHRSSGAGGDDDDLQLLSRLLSQVESTREEQRLNH 79
           E++E++E +S AI +L+ E     AS        D DD   LS L+SQ+ES   + +   
Sbjct: 2   ESSEDVENLSRAIEKLLHEKRKREAS--GDAFIEDADDQLFLSSLISQLESPNPKGK--E 61

Query: 80  SQISSQQEDEKIIETDLEPQSENVERNGSIVKTEKEIVKELKEVKRQNFITHCLVSAMII 139
             I+ ++E+++    D  P     E    + ++ +EI K++K+VK+QN ITH L+SA II
Sbjct: 62  DVITGEEEEKEEESADSSPSKGKSEGQRQLEESIEEIAKDIKKVKKQNKITHVLLSATII 121

Query: 140 LTVAWQISEVSFILKLRDGLSNPFKSLGTIL 171
           LT+ WQ+SE S I  L+D +S+P +S+G +L
Sbjct: 122 LTLVWQLSEYSMIFMLKDRISHPVRSIGGML 148

The following BLAST results are available for this feature:

BLAST of Lsi07G000210 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi07G000210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BXR6	3.0e-63	79.57	uncharacterized protein LOC103494562 OS=Cucumis melo OX=3656 GN=LOC103494562 PE=...	[more]
A0A0A0KTW6	4.4e-62	79.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012410 PE=4 SV=1	[more]
A0A5A7TSP6	5.7e-62	79.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CZN3	1.6e-56	78.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1IS75	2.0e-51	69.31	uncharacterized protein LOC111479485 OS=Cucurbita maxima OX=3661 GN=LOC111479485...	[more]

BLAST of Lsi07G000210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895500.1	1.5e-77	88.95	uncharacterized protein LOC120083719 [Benincasa hispida]	[more]
XP_008454012.1	6.3e-63	79.57	PREDICTED: uncharacterized protein LOC103494562 [Cucumis melo]	[more]
XP_004152113.1	9.0e-62	79.69	uncharacterized protein LOC101214522 [Cucumis sativus]	[more]
KAA0044571.1	1.2e-61	79.67	uncharacterized protein E6C27_scaffold46G003210 [Cucumis melo var. makuwa]	[more]
KAE8649098.1	1.3e-60	79.89	hypothetical protein Csa_015237 [Cucumis sativus]	[more]

BLAST of Lsi07G000210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27300.1	2.3e-15	37.09	unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..89
None	No IPR available	PANTHER	PTHR35280:SF1	F17L21.9	coord: 8..205
None	No IPR available	PANTHER	PTHR35280	F17L21.9	coord: 8..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G000210.1	Lsi07G000210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane