Lsi06G016770 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G016770
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Rubredoxin-like domain-containing protein
Location	chr06: 26976776 .. 26978626 (-)
RNA-Seq Expression	Lsi06G016770
Synteny	Lsi06G016770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGATGAATTTGTTGGACGGGAATGGATGGTAGTGTAAGTTTGAAGAGGGTGAGGAGTGTAGAGAGATAGGATTGGTATTGGATCAAAATGATTGGGAAGATTGATTGATTGTCCACCACTCATAGTTCCCATTCACTATTCACCCATTCTCTTCTCTCTGTTTTCTGCTGATTTCCCATCCTTCTCTCTCATTTCAACTCCCTCTGCTTCAGCTTTACCTTCCTTCAATGGCTTCCGTTTCAGCTTCTTCTCTCAGTCTCAGATTCCACCTACCATCGAACCCACATTCCAAGGTTAACCAGGTTTTTCCCTTCACATTCTTCTTCAGACTTTGTTTACACTTCCACTTCCGTTGCATTGCTCTTGTGTCCCCATGCTTTAATATTACTTTTCTTTGTTATCAATTATAATTCATTATCATTTATTTAAGGAAGACGGCGGCGCTGATAGCAACTCCATGTTTTTGGGTTCTACTTCCAAACGTTTATCTTTGAAATCCTCCTTCATCTCTCCTTTACGTAAGATTCCTTCTTTAAGGACGCCAAACTCTGTTGCTGCTGCTGCCCCCAAGTTCTCCATGCGCGTCGCTTCCAAACAAGCCTATATCTGCCGTGATTGCGGGTATCACTTCTTATCTCTGCGTTTCACCCTAATTTACATCTTAATTTTCTACATTCTTGTAAAGCTCTCTTTTCGACGAATATGTAGGTACATTTACAACGATAGAACTCCTTTTGACAAATTGCCTGATAAGTATTTCTGTCCTGGTAATTTGCTTCCCTTTCTCACGCTTCGACTATATTGACCTTTGTTTTCTTATTTCTTGTTTGTAATTCTATTCATGAACCATGCCGCCTCCTTTCTTCAAACCAATCGAACCAATTAGTTTACTGTTGACGTTGGGTCGCCTTTTTAACATAATTAAGTTCCTGCTATTATCTTAAACTGAAAACTTAAAAAAATGATAACTTCAAGAACATACAATTCTCTTCATCTAAGTGAAACCAACTTCAAATCATTTACATTCTGCTCCAACTCAATAAAGAAATTGAAATCTAATATAAATTTTATCGTGCCTTGGCAGTATGTGGTGCTCCTAAGCGACGATTTAGAGCTTATGAGCAATCTGTGAATAAAAATGATAACGAATTTGATGTGAGGAAGGCGAGAAAGGCGCAGATCCAGAAAGATGAAGCTATTGGGTAAGACGGAAAAATCAAATTACTATCTTTATAAATGATCATAGATTTTAATGATTGTTTAGTCAGTCTGATTGATATCATGTAAAATGGTATAGGAAGGTGCTGCCTATTGCTGCTGCAGTGGCAATCGTGGCACTTGTAGGTTTATACTTGTACCTGAATAACGTCTTCTAGATCGAGTGGCTTGCTCACTGACGGGGGCTTAACATCATTTGTTTGATCATATTCTTCCCGAGGCTGTTTTATTTTGATTTAGATATTATATGTATTTTTTCCATCCACTATCCAAATACACTGGCAAATTGTTTAAGCTTTACATTATTATTATATATATACACACTGAATTGTTTATTGATTATGTTTATTTGCACTCAGTGGAATAGCCGTGTGCCTTACCTAATTTATTGGACCTGTAGATGTGGCTTGGGGTTTGATTGACTTTGGGGTGATTATATTTTGGAAGATTTTGTTTAACCAGTTCTTTCATGGACTGGACAATTGATGTGCTTCTAGATTCACTTATTCAGGCAGAATTGTTAGACACATTTCTAAGCGACCGCTCTCAACAATGTCCTAAATTGCAGGACAATTTAAACTCACTCTTTCCTTTTTGGTTATGTAAAACCGTTAAAGGTGCAGAACCAGG

mRNA sequence

GGAAGATGAATTTGTTGGACGGGAATGGATGGTAGTGTAAGTTTGAAGAGGGTGAGGAGTGTAGAGAGATAGGATTGGTATTGGATCAAAATGATTGGGAAGATTGATTGATTGTCCACCACTCATAGTTCCCATTCACTATTCACCCATTCTCTTCTCTCTGTTTTCTGCTGATTTCCCATCCTTCTCTCTCATTTCAACTCCCTCTGCTTCAGCTTTACCTTCCTTCAATGGCTTCCGTTTCAGCTTCTTCTCTCAGTCTCAGATTCCACCTACCATCGAACCCACATTCCAAGGTTAACCAGGAAGACGGCGGCGCTGATAGCAACTCCATGTTTTTGGGTTCTACTTCCAAACGTTTATCTTTGAAATCCTCCTTCATCTCTCCTTTACGTAAGATTCCTTCTTTAAGGACGCCAAACTCTGTTGCTGCTGCTGCCCCCAAGTTCTCCATGCGCGTCGCTTCCAAACAAGCCTATATCTGCCGTGATTGCGGGTACATTTACAACGATAGAACTCCTTTTGACAAATTGCCTGATAAGTATTTCTGTCCTGTATGTGGTGCTCCTAAGCGACGATTTAGAGCTTATGAGCAATCTGTGAATAAAAATGATAACGAATTTGATGTGAGGAAGGCGAGAAAGGCGCAGATCCAGAAAGATGAAGCTATTGGGAAGGTGCTGCCTATTGCTGCTGCAGTGGCAATCGTGGCACTTGTAGGTTTATACTTGTACCTGAATAACGTCTTCTAGATCGAGTGGCTTGCTCACTGACGGGGGCTTAACATCATTTGTTTGATCATATTCTTCCCGAGGCTGTTTTATTTTGATTTAGATATTATATGTATTTTTTCCATCCACTATCCAAATACACTGGCAAATTGTTTAAGCTTTACATTATTATTATATATATACACACTGAATTGTTTATTGATTATGTTTATTTGCACTCAGTGGAATAGCCGTGTGCCTTACCTAATTTATTGGACCTGTAGATGTGGCTTGGGGTTTGATTGACTTTGGGGTGATTATATTTTGGAAGATTTTGTTTAACCAGTTCTTTCATGGACTGGACAATTGATGTGCTTCTAGATTCACTTATTCAGGCAGAATTGTTAGACACATTTCTAAGCGACCGCTCTCAACAATGTCCTAAATTGCAGGACAATTTAAACTCACTCTTTCCTTTTTGGTTATGTAAAACCGTTAAAGGTGCAGAACCAGG

Coding sequence (CDS)

ATGGCTTCCGTTTCAGCTTCTTCTCTCAGTCTCAGATTCCACCTACCATCGAACCCACATTCCAAGGTTAACCAGGAAGACGGCGGCGCTGATAGCAACTCCATGTTTTTGGGTTCTACTTCCAAACGTTTATCTTTGAAATCCTCCTTCATCTCTCCTTTACGTAAGATTCCTTCTTTAAGGACGCCAAACTCTGTTGCTGCTGCTGCCCCCAAGTTCTCCATGCGCGTCGCTTCCAAACAAGCCTATATCTGCCGTGATTGCGGGTACATTTACAACGATAGAACTCCTTTTGACAAATTGCCTGATAAGTATTTCTGTCCTGTATGTGGTGCTCCTAAGCGACGATTTAGAGCTTATGAGCAATCTGTGAATAAAAATGATAACGAATTTGATGTGAGGAAGGCGAGAAAGGCGCAGATCCAGAAAGATGAAGCTATTGGGAAGGTGCTGCCTATTGCTGCTGCAGTGGCAATCGTGGCACTTGTAGGTTTATACTTGTACCTGAATAACGTCTTCTAG

Protein sequence

MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSLRTPNSVAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRAYEQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVAIVALVGLYLYLNNVF

Homology

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BLAST of Lsi06G016770 vs. ExPASy Swiss-Prot
Match: P04170 (Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB) OX=525146 GN=rd1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.0e-05
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 81  QAYICRDCGYIY----NDRTPFDKLPDKYFCPVCGAPKRRF 118
           Q Y+C  CGY Y    +D  PFD+LPD + CPVCG  K +F
Sbjct: 2   QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQF 42

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BLAST of Lsi06G016770 vs. ExPASy Swiss-Prot
Match: P24297 (Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rub PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.9e-05
Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 83  YICRDCGYIYND-----------RTPFDKLPDKYFCPVCGAPKRRFRAYE 122
           ++C+ CGYIY++            T F++LPD + CP+CGAPK  F   E
Sbjct: 4   WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLE 53

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BLAST of Lsi06G016770 vs. ExPASy Swiss-Prot
Match: P58992 (Rubredoxin-1 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=rub1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 20/50 (40.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 82  AYICRDCGYIYNDR-----------TPFDKLPDKYFCPVCGAPKRRFRAY 121
           +++C +CGYIY+              PFDKLPD + CPVC  PK +F  +
Sbjct: 16  SWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKF 65

[Close]

BLAST of Lsi06G016770 vs. ExPASy Swiss-Prot
Match: O26258 (Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=MTH_155 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-04
Identity = 21/53 (39.62%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 77  VASKQAYICRDCGYIYNDR-----------TPFDKLPDKYFCPVCGAPKRRFR 119
           V++ + Y CR CGYIY+             TPF+ LP+ + CP CGA K+ F+
Sbjct: 8   VSAMKRYKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFK 60

[Close]

BLAST of Lsi06G016770 vs. ExPASy Swiss-Prot
Match: Q9V099 (Rubredoxin OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=rub PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.7e-04
Identity = 20/48 (41.67%), Postives = 26/48 (54.17%), Query Frame = 0


Query: 85  CRDCGYIYND-----------RTPFDKLPDKYFCPVCGAPKRRFRAYE 122
           C+ CGYIY++            T F+ LPD + CP+CGAPK  F   E
Sbjct: 6   CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE 53

[Close]

BLAST of Lsi06G016770 vs. ExPASy TrEMBL
Match: A0A5A7UPF0 (Rubredoxin family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00170 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.9e-75
Identity = 153/174 (87.93%), Postives = 159/174 (91.38%), Query Frame = 0


Query: 1   MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSL 60
           MASVSASSLS  FHLP  PH K+NQEDGG D NSMFL S S RLSLKSSFISPLRKIPSL
Sbjct: 1   MASVSASSLS--FHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSL 60

Query: 61  RTPNS-VAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRA 120
           R  NS VAAA+PKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFR 
Sbjct: 61  RRQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRP 120

Query: 121 YEQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVAIVALVGLYLYLNNVF 174
           YEQ+VNKNDNEFD+RKARKAQIQKDEAIGKVLPIAAA+ IVALVGLYLYLN+VF
Sbjct: 121 YEQTVNKNDNEFDLRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSVF 172

[Close]

BLAST of Lsi06G016770 vs. ExPASy TrEMBL
Match: E5GBM0 (Electron transporter OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.9e-75
Identity = 153/174 (87.93%), Postives = 159/174 (91.38%), Query Frame = 0


Query: 1   MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSL 60
           MASVSASSLS  FHLP  PH K+NQEDGG D NSMFL S S RLSLKSSFISPLRKIPSL
Sbjct: 1   MASVSASSLS--FHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSL 60

Query: 61  RTPNS-VAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRA 120
           R  NS VAAA+PKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFR 
Sbjct: 61  RRQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRP 120

Query: 121 YEQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVAIVALVGLYLYLNNVF 174
           YEQ+VNKNDNEFD+RKARKAQIQKDEAIGKVLPIAAA+ IVALVGLYLYLN+VF
Sbjct: 121 YEQTVNKNDNEFDLRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSVF 172

[Close]

BLAST of Lsi06G016770 vs. ExPASy TrEMBL
Match: A0A1S3CLS9 (uncharacterized protein LOC103502280 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502280 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.9e-75
Identity = 153/174 (87.93%), Postives = 159/174 (91.38%), Query Frame = 0


Query: 1   MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSL 60
           MASVSASSLS  FHLP  PH K+NQEDGG D NSMFL S S RLSLKSSFISPLRKIPSL
Sbjct: 1   MASVSASSLS--FHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSL 60

Query: 61  RTPNS-VAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRA 120
           R  NS VAAA+PKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFR 
Sbjct: 61  RRQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRP 120

Query: 121 YEQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVAIVALVGLYLYLNNVF 174
           YEQ+VNKNDNEFD+RKARKAQIQKDEAIGKVLPIAAA+ IVALVGLYLYLN+VF
Sbjct: 121 YEQTVNKNDNEFDLRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSVF 172

[Close]

BLAST of Lsi06G016770 vs. ExPASy TrEMBL
Match: A0A0A0LNF5 (Rubredoxin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G000640 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.2e-74
Identity = 151/174 (86.78%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 1   MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSL 60
           MAS+SASSLS  FHLP  PH K+NQEDGG D NSMFL S S RLSLKSSFISPLRKIPSL
Sbjct: 1   MASISASSLS--FHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSL 60

Query: 61  RTPNS-VAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRA 120
           R  NS VAAA+PKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFR 
Sbjct: 61  RKQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRP 120

Query: 121 YEQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVAIVALVGLYLYLNNVF 174
           YEQ+V+KNDNEFDVRKARKAQIQKDEAIGKVLPIAAA+ IVALVGLYLYLN+ F
Sbjct: 121 YEQTVSKNDNEFDVRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSAF 172

[Close]

BLAST of Lsi06G016770 vs. ExPASy TrEMBL
Match: A0A6J1E6B5 (uncharacterized protein LOC111429830 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111429830 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.3e-71
Identity = 147/174 (84.48%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 1   MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSL 60
           MAS SASSLS  FHLP NPHSK+NQEDGGAD +SM  GS S R SLKSSFISPLR+IPS 
Sbjct: 44  MASFSASSLS--FHLPPNPHSKINQEDGGADRDSMLWGSASNRSSLKSSFISPLRQIPST 103

Query: 61  RTPNSVAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRAY 120
           R      AAAPKFSMRVASKQAYICRDCGYIYNDRTPF+KLPD YFCPVCGAPKRRFR Y
Sbjct: 104 RKQKCAVAAAPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPY 163

Query: 121 EQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPI-AAAVAIVALVGLYLYLNNVF 174
           EQSV KNDNEFDVRKARKAQIQKDEAIGKVLPI AAAV IVALVGLYLYLN+VF
Sbjct: 164 EQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVALVGLYLYLNSVF 215

[Close]

BLAST of Lsi06G016770 vs. NCBI nr
Match: XP_008464376.1 (PREDICTED: uncharacterized protein LOC103502280 isoform X1 [Cucumis melo] >ADN33860.1 electron transporter [Cucumis melo subsp. melo] >KAA0057733.1 rubredoxin family protein [Cucumis melo var. makuwa] >TYJ98419.1 rubredoxin family protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74
Identity = 153/174 (87.93%), Postives = 159/174 (91.38%), Query Frame = 0


Query: 1   MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSL 60
           MASVSASSLS  FHLP  PH K+NQEDGG D NSMFL S S RLSLKSSFISPLRKIPSL
Sbjct: 1   MASVSASSLS--FHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSL 60

Query: 61  RTPNS-VAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRA 120
           R  NS VAAA+PKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFR 
Sbjct: 61  RRQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRP 120

Query: 121 YEQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVAIVALVGLYLYLNNVF 174
           YEQ+VNKNDNEFD+RKARKAQIQKDEAIGKVLPIAAA+ IVALVGLYLYLN+VF
Sbjct: 121 YEQTVNKNDNEFDLRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSVF 172

[Close]

BLAST of Lsi06G016770 vs. NCBI nr
Match: XP_004138023.1 (uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus] >KGN63440.1 hypothetical protein Csa_013438 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 6.5e-74
Identity = 151/174 (86.78%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 1   MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSL 60
           MAS+SASSLS  FHLP  PH K+NQEDGG D NSMFL S S RLSLKSSFISPLRKIPSL
Sbjct: 1   MASISASSLS--FHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSL 60

Query: 61  RTPNS-VAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRA 120
           R  NS VAAA+PKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFR 
Sbjct: 61  RKQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRP 120

Query: 121 YEQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVAIVALVGLYLYLNNVF 174
           YEQ+V+KNDNEFDVRKARKAQIQKDEAIGKVLPIAAA+ IVALVGLYLYLN+ F
Sbjct: 121 YEQTVSKNDNEFDVRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSAF 172

[Close]

BLAST of Lsi06G016770 vs. NCBI nr
Match: XP_023516579.1 (uncharacterized protein LOC111780418 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.4 bits (716), Expect = 1.0e-71
Identity = 146/173 (84.39%), Postives = 151/173 (87.28%), Query Frame = 0


Query: 1   MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSL 60
           MAS SASSLS  FHLP NPHSK+NQEDGGAD  SM  GS S R SLKSSFISPLR+IPS 
Sbjct: 1   MASFSASSLS--FHLPPNPHSKINQEDGGADRGSMLWGSASNRSSLKSSFISPLRQIPST 60

Query: 61  RTPNSVAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRAY 120
           R      AAAPKFSMRVASKQAYICRDCGYIYNDRTPF+KLPD YFCPVCGAPKRRFR Y
Sbjct: 61  RKQKCAVAAAPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPY 120

Query: 121 EQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVAIVALVGLYLYLNNVF 174
           EQSV KNDNEFDVRKARKAQIQKDEAIGKVLPIAAAV I+ALVGLYLYLN+VF
Sbjct: 121 EQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVGILALVGLYLYLNSVF 171

[Close]

BLAST of Lsi06G016770 vs. NCBI nr
Match: XP_022921625.1 (uncharacterized protein LOC111429830 isoform X1 [Cucurbita moschata])

HSP 1 Score: 277.3 bits (708), Expect = 8.8e-71
Identity = 147/174 (84.48%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 1   MASVSASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSL 60
           MAS SASSLS  FHLP NPHSK+NQEDGGAD +SM  GS S R SLKSSFISPLR+IPS 
Sbjct: 44  MASFSASSLS--FHLPPNPHSKINQEDGGADRDSMLWGSASNRSSLKSSFISPLRQIPST 103

Query: 61  RTPNSVAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRAY 120
           R      AAAPKFSMRVASKQAYICRDCGYIYNDRTPF+KLPD YFCPVCGAPKRRFR Y
Sbjct: 104 RKQKCAVAAAPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPY 163

Query: 121 EQSVNKNDNEFDVRKARKAQIQKDEAIGKVLPI-AAAVAIVALVGLYLYLNNVF 174
           EQSV KNDNEFDVRKARKAQIQKDEAIGKVLPI AAAV IVALVGLYLYLN+VF
Sbjct: 164 EQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVALVGLYLYLNSVF 215

[Close]

BLAST of Lsi06G016770 vs. NCBI nr
Match: KAG6589344.1 (hypothetical protein SDJN03_14767, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.9 bits (707), Expect = 1.2e-70
Identity = 144/169 (85.21%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 5   SASSLSLRFHLPSNPHSKVNQEDGGADSNSMFLGSTSKRLSLKSSFISPLRKIPSLRTPN 64
           SASSLSL  HLP NPHSK+NQEDGGAD +SM  GS S R SLKSSFISPLR+IPS R   
Sbjct: 195 SASSLSL--HLPPNPHSKINQEDGGADRDSMLWGSASNRSSLKSSFISPLRQIPSTRKQK 254

Query: 65  SVAAAAPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRAYEQSV 124
              AAAPKFSMRVASKQAYICRDCGYIYNDRTPF+KLPD YFCPVCGAPKRRFR YEQSV
Sbjct: 255 CAVAAAPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPYEQSV 314

Query: 125 NKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVAIVALVGLYLYLNNVF 174
            KNDNEFDVRKARKAQIQKDEAIGKVLPIAAAV IVALVGLYLYLN+VF
Sbjct: 315 TKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNSVF 361

[Close]

BLAST of Lsi06G016770 vs. TAIR 10
Match: AT5G51010.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 165.6 bits (418), Expect = 3.5e-41
Identity = 87/143 (60.84%), Postives = 109/143 (76.22%), Query Frame = 0


Query: 30  ADSNSMFLGSTSKRLSLKSSFISPLRKIPSLRTPNSVA-AAAPKFSMRVASKQAYICRDC 89
           A  +S+ L  T+  L  +SSF+ P   +  L    S++ ++AP+FSMRV+SKQAYICRDC
Sbjct: 12  AGRSSVVLPPTTPTLQ-RSSFL-PYYSMRLLGNKKSLSKSSAPRFSMRVSSKQAYICRDC 71

Query: 90  GYIYNDRTPFDKLPDKYFCPVCGAPKRRFRAYEQSVNKNDNEFDVRKARKAQIQKDEAIG 149
           GYIYNDRTPFDKLPD YFCPVC APKRRFRAY   V+KN N+ DVRKARKA++Q+DEA+G
Sbjct: 72  GYIYNDRTPFDKLPDNYFCPVCAAPKRRFRAYMPDVSKNVNDKDVRKARKAELQRDEAVG 131

Query: 150 KVLPIAAAVAIVALVGLYLYLNN 172
           K LPI  AV ++AL  LY Y+N+
Sbjct: 132 KALPIGIAVGVLALAALYFYVNS 152

[Close]

BLAST of Lsi06G016770 vs. TAIR 10
Match: AT5G17170.1 (rubredoxin family protein )

HSP 1 Score: 58.5 bits (140), Expect = 6.0e-09
Identity = 26/62 (41.94%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 69  AAPKFSMRVASKQ----AYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRAYEQSV 127
           A P+F  ++   Q     +IC DCG+IY     FD+ PD Y CP C APK+RF  Y+ + 
Sbjct: 179 APPRFGRKLTETQKARATHICLDCGFIYTLPKSFDEQPDTYVCPQCIAPKKRFAKYDVNT 238

The following BLAST results are available for this feature:

BLAST of Lsi06G016770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04170	1.0e-05	51.22	Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB) ...	[more]
P24297	3.9e-05	40.00	Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1...	[more]
P58992	1.1e-04	40.00	Rubredoxin-1 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 1038...	[more]
O26258	2.5e-04	39.62	Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096...	[more]
Q9V099	5.7e-04	41.67	Rubredoxin OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=rub PE=1 SV=1	[more]

BLAST of Lsi06G016770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UPF0	4.9e-75	87.93	Rubredoxin family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
E5GBM0	4.9e-75	87.93	Electron transporter OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3CLS9	4.9e-75	87.93	uncharacterized protein LOC103502280 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LNF5	3.2e-74	86.78	Rubredoxin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G00...	[more]
A0A6J1E6B5	4.3e-71	84.48	uncharacterized protein LOC111429830 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Lsi06G016770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464376.1	1.0e-74	87.93	PREDICTED: uncharacterized protein LOC103502280 isoform X1 [Cucumis melo] >ADN33...	[more]
XP_004138023.1	6.5e-74	86.78	uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus] >KGN63440.1 hy...	[more]
XP_023516579.1	1.0e-71	84.39	uncharacterized protein LOC111780418 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022921625.1	8.8e-71	84.48	uncharacterized protein LOC111429830 isoform X1 [Cucurbita moschata]	[more]
KAG6589344.1	1.2e-70	85.21	hypothetical protein SDJN03_14767, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi06G016770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51010.1	3.5e-41	60.84	Rubredoxin-like superfamily protein	[more]
AT5G17170.1	6.0e-09	41.94	rubredoxin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.20.28.10		coord: 80..119 e-value: 2.6E-13 score: 51.5
None	No IPR available	PANTHER	PTHR48136	RUBREDOXIN-LIKE SUPERFAMILY PROTEIN	coord: 35..172
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 80..124
IPR024934	Rubredoxin-like domain	PROSITE	PS50903	RUBREDOXIN_LIKE	coord: 80..120 score: 12.200847
IPR024935	Rubredoxin domain	CDD	cd00730	rubredoxin	coord: 83..117 e-value: 5.65698E-12 score: 55.775

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G016770.1	Lsi06G016770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005506	iron ion binding