Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTCTACCAACAGACTGTCACAATGCCATATGTCCTATTCTTGTTTCCAAAACAGTTGCGAATTCTCTCTTTCAAATTCTCTGTTTTTGTCTTTAAGCTTTCTTCATCTCATCCTTTTTTTTCTGTGTCTCTGTTGTGCAACTCAAATGCAATGGGTTGTGGAAACTCCAAGCTTAATCCGGAAGGAGAATTGATTCCTCCCAGGATTCGCCCACTTCTTCTCCGGAGTAAATTTATGGAGTTGAGGAAACGTAAGAATGGAACCAATCTTAGAGATGGAACGCTGTCAAAGAAAGTGCTTTTGAAAGATGGAGAATCAGAAGAAAACTCCATGCTTGTTGATAACAGGAAGAGTATGTGTTGTTCACATGAAGGCAGCACAAATGAACATGATTCAGCTTCAGCTATTCCCCTATCTAACAATGCAACCAAAGATGGGGAACAGAGCAATCATCTCTTGGAGGAGGTGCCTCTGACAAACGTACAATTGAAAACTATCCACCCTGATGAAACTCCTGATCTTGAACTGAAACAAGACAAAACAATGGATGACCATAAATGTATCCAACAAGGAGATGATAACAAGAAAGAAGGAGAAGAGGGGAGGGCTGACAACGAAGAGAATCGCGGCTTCATCTGTCCTGGATCTCCCAGTTTCAGAGTTTATTTTGTTGAAGAAACACAAGATGACAAAGAAAATGGTAAACTAAAACAAAACAAGACTTTCAAGCCAGATGTAGAAATCATTATGTATTATAACCAAATACAATATCTATATACATATTGTGCAGTTGAAATGAAAGATGCAGGTATGGAAGATGTCTCACACAAGAAGTCGCCAAGTCATGACAGCGTTGAGAGCTCCACTAGTGCAAAATCTGTCGAGGTGGGTTCGCACATTCTCATCTTTAGAAGATTTGGTGTTTGGGATTTTTGTTTGTGTTTCTCTCATTGATTTGATTTCACTTGAACAGGGCCAGGAGAACAAGGTGATGAAGAAAGGGAAAAAAGGAACCACTTTCAATAGGGTCATCAGTAAAAAAAGACCAGTTGGTGTTGGTGTGAAGAATCTGTTGAATGTTAAATCTTGCTATCATTTAAGTTGTTCTGGCAATGACAGAGCCAGTCTTCTAGCTAGAAAAGCCGAAGCTTAAGATTTTCCTAGCAATGAAAGGGATAGTTTCTACTCTTCCTTTCTCCATTTCAAGGGGTTGGGGGAAGGGAGATTTCGTGCTGATTTTTTAGGTCATTAGTCCCTCAATGTG
mRNA sequence
AATTTCTACCAACAGACTGTCACAATGCCATATGTCCTATTCTTGTTTCCAAAACAGTTGCGAATTCTCTCTTTCAAATTCTCTGTTTTTGTCTTTAAGCTTTCTTCATCTCATCCTTTTTTTTCTGTGTCTCTGTTGTGCAACTCAAATGCAATGGGTTGTGGAAACTCCAAGCTTAATCCGGAAGGAGAATTGATTCCTCCCAGGATTCGCCCACTTCTTCTCCGGAGTAAATTTATGGAGTTGAGGAAACGTAAGAATGGAACCAATCTTAGAGATGGAACGCTGTCAAAGAAAGTGCTTTTGAAAGATGGAGAATCAGAAGAAAACTCCATGCTTGTTGATAACAGGAAGAGTATGTGTTGTTCACATGAAGGCAGCACAAATGAACATGATTCAGCTTCAGCTATTCCCCTATCTAACAATGCAACCAAAGATGGGGAACAGAGCAATCATCTCTTGGAGGAGGTGCCTCTGACAAACGTACAATTGAAAACTATCCACCCTGATGAAACTCCTGATCTTGAACTGAAACAAGACAAAACAATGGATGACCATAAATGTATCCAACAAGGAGATGATAACAAGAAAGAAGGAGAAGAGGGGAGGGCTGACAACGAAGAGAATCGCGGCTTCATCTGTCCTGGATCTCCCAGTTTCAGAGTTTATTTTGTTGAAGAAACACAAGATGACAAAGAAAATGTTGAAATGAAAGATGCAGGTATGGAAGATGTCTCACACAAGAAGTCGCCAAGTCATGACAGCGTTGAGAGCTCCACTAGTGCAAAATCTGTCGAGGGCCAGGAGAACAAGGTGATGAAGAAAGGGAAAAAAGGAACCACTTTCAATAGGGTCATCAGTAAAAAAAGACCAGTTGGTGTTGGTGTGAAGAATCTGTTGAATGTTAAATCTTGCTATCATTTAAGTTGTTCTGGCAATGACAGAGCCAGTCTTCTAGCTAGAAAAGCCGAAGCTTAAGATTTTCCTAGCAATGAAAGGGATAGTTTCTACTCTTCCTTTCTCCATTTCAAGGGGTTGGGGGAAGGGAGATTTCGTGCTGATTTTTTAGGTCATTAGTCCCTCAATGTG
Coding sequence (CDS)
ATGCCATATGTCCTATTCTTGTTTCCAAAACAGTTGCGAATTCTCTCTTTCAAATTCTCTGTTTTTGTCTTTAAGCTTTCTTCATCTCATCCTTTTTTTTCTGTGTCTCTGTTGTGCAACTCAAATGCAATGGGTTGTGGAAACTCCAAGCTTAATCCGGAAGGAGAATTGATTCCTCCCAGGATTCGCCCACTTCTTCTCCGGAGTAAATTTATGGAGTTGAGGAAACGTAAGAATGGAACCAATCTTAGAGATGGAACGCTGTCAAAGAAAGTGCTTTTGAAAGATGGAGAATCAGAAGAAAACTCCATGCTTGTTGATAACAGGAAGAGTATGTGTTGTTCACATGAAGGCAGCACAAATGAACATGATTCAGCTTCAGCTATTCCCCTATCTAACAATGCAACCAAAGATGGGGAACAGAGCAATCATCTCTTGGAGGAGGTGCCTCTGACAAACGTACAATTGAAAACTATCCACCCTGATGAAACTCCTGATCTTGAACTGAAACAAGACAAAACAATGGATGACCATAAATGTATCCAACAAGGAGATGATAACAAGAAAGAAGGAGAAGAGGGGAGGGCTGACAACGAAGAGAATCGCGGCTTCATCTGTCCTGGATCTCCCAGTTTCAGAGTTTATTTTGTTGAAGAAACACAAGATGACAAAGAAAATGTTGAAATGAAAGATGCAGGTATGGAAGATGTCTCACACAAGAAGTCGCCAAGTCATGACAGCGTTGAGAGCTCCACTAGTGCAAAATCTGTCGAGGGCCAGGAGAACAAGGTGATGAAGAAAGGGAAAAAAGGAACCACTTTCAATAGGGTCATCAGTAAAAAAAGACCAGTTGGTGTTGGTGTGAAGAATCTGTTGAATGTTAAATCTTGCTATCATTTAAGTTGTTCTGGCAATGACAGAGCCAGTCTTCTAGCTAGAAAAGCCGAAGCTTAA
Protein sequence
MPYVLFLFPKQLRILSFKFSVFVFKLSSSHPFFSVSLLCNSNAMGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGESEENSMLVDNRKSMCCSHEGSTNEHDSASAIPLSNNATKDGEQSNHLLEEVPLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDDNKKEGEEGRADNEENRGFICPGSPSFRVYFVEETQDDKENVEMKDAGMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKKGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA
Homology
BLAST of Lsi06G016660 vs. ExPASy TrEMBL
Match:
A0A5D3BHA4 (ABC transporter F family member 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00270 PE=4 SV=1)
HSP 1 Score: 409.1 bits (1050), Expect = 1.7e-110
Identity = 225/291 (77.32%), Postives = 251/291 (86.25%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 103
MGCGNSKLNPEGEL+PPRIRPLL+R+KF+ELRKRKNGT+LRDG LSKKVLLK+GES EEN
Sbjct: 1 MGCGNSKLNPEGELVPPRIRPLLVRNKFLELRKRKNGTHLRDGALSKKVLLKEGESEEEN 60
Query: 104 SMLVDNR----KSMCCSHEGST------NEHDSASAIPLSN---NATKDGEQSNHLLEEV 163
+M VDNR + C + + T +EH+SAS IP SN NATK+GEQSN +LEE
Sbjct: 61 AMFVDNRHECGSTKCLASQQHTINNATKDEHNSASTIPPSNNDANATKNGEQSNRILEEE 120
Query: 164 PLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FICP 223
P ++QLKT HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG ICP
Sbjct: 121 PRPHIQLKTTHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSIICP 180
Query: 224 GSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMK 283
GSPSFR YFVEETQDDKE VEMKDA GM DVSHKKSPSHDSVES+TSAKS EGQENKV+K
Sbjct: 181 GSPSFRFYFVEETQDDKEKVEMKDAGGMGDVSHKKSPSHDSVESTTSAKSGEGQENKVIK 240
Query: 284 KGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 318
KGKKGTTFNRVISK+RPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 KGKKGTTFNRVISKRRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 291
BLAST of Lsi06G016660 vs. ExPASy TrEMBL
Match:
A0A1S3CLT6 (uncharacterized protein LOC103502290 OS=Cucumis melo OX=3656 GN=LOC103502290 PE=4 SV=1)
HSP 1 Score: 409.1 bits (1050), Expect = 1.7e-110
Identity = 225/291 (77.32%), Postives = 251/291 (86.25%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 103
MGCGNSKLNPEGEL+PPRIRPLL+R+KF+ELRKRKNGT+LRDG LSKKVLLK+GES EEN
Sbjct: 7 MGCGNSKLNPEGELVPPRIRPLLVRNKFLELRKRKNGTHLRDGALSKKVLLKEGESEEEN 66
Query: 104 SMLVDNR----KSMCCSHEGST------NEHDSASAIPLSN---NATKDGEQSNHLLEEV 163
+M VDNR + C + + T +EH+SAS IP SN NATK+GEQSN +LEE
Sbjct: 67 AMFVDNRHECGSTKCLASQQHTINNATKDEHNSASTIPPSNNDANATKNGEQSNRILEEE 126
Query: 164 PLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FICP 223
P ++QLKT HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG ICP
Sbjct: 127 PRPHIQLKTTHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSIICP 186
Query: 224 GSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMK 283
GSPSFR YFVEETQDDKE VEMKDA GM DVSHKKSPSHDSVES+TSAKS EGQENKV+K
Sbjct: 187 GSPSFRFYFVEETQDDKEKVEMKDAGGMGDVSHKKSPSHDSVESTTSAKSGEGQENKVIK 246
Query: 284 KGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 318
KGKKGTTFNRVISK+RPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 247 KGKKGTTFNRVISKRRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 297
BLAST of Lsi06G016660 vs. ExPASy TrEMBL
Match:
A0A0A0LNT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000760 PE=4 SV=1)
HSP 1 Score: 397.9 bits (1021), Expect = 4.0e-107
Identity = 221/292 (75.68%), Postives = 245/292 (83.90%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 103
MGCGNSKLNP GEL+PPRIRPL +R+K +ELRKRKNGT+LRDG LSKKVLLKDGES EEN
Sbjct: 1 MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60
Query: 104 SMLVDNR----KSMCCSHEGSTN-------EHDSASAIPLSNN---ATKDGEQSNHLLEE 163
+M VDNR + C + + TN EH+SAS IP SNN ATK GEQSNH+LEE
Sbjct: 61 AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120
Query: 164 VPLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FIC 223
P ++QLK HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG FIC
Sbjct: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC 180
Query: 224 PGSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVM 283
PGSPSFR+YFVEETQDDKE VEMKDA GM DVSHKKSPS DSVES+TSAK EGQENK +
Sbjct: 181 PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI 240
Query: 284 KKGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 318
KKGKK TTFNRV+SKKRPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 292
BLAST of Lsi06G016660 vs. ExPASy TrEMBL
Match:
A0A6J1E3W4 (uncharacterized protein LOC111429712 OS=Cucurbita moschata OX=3662 GN=LOC111429712 PE=4 SV=1)
HSP 1 Score: 280.4 bits (716), Expect = 9.2e-72
Identity = 173/290 (59.66%), Postives = 206/290 (71.03%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGE-SEEN 103
MGCGNSKL PEGE I P IRPLL R+KF E RKRKNGT+LR+ LSKKVLLK+GE EEN
Sbjct: 1 MGCGNSKLTPEGESILPMIRPLLFRTKFAEFRKRKNGTHLRETALSKKVLLKEGEIEEEN 60
Query: 104 SML-VDNRKSMCCSHEGST-----------NEHDSASAIPLSNNATKDGEQSNHLLEEVP 163
S+L V NR S+ SH+G T +EHDS +A NHLLE+
Sbjct: 61 SILPVHNRNSIYGSHDGKTICLHTKQENHMDEHDSPNA--------------NHLLEQHK 120
Query: 164 LTNVQLKTIHPDETPDLELKQDKTMDDHK-CIQQGDD-NKKEGEEGRADNEENRGFICPG 223
D +ELK++KTM++ + +++GDD NK+EGEEGR DNE+NR ICPG
Sbjct: 121 PN---------DNGTRVELKENKTMNNQRTAVEEGDDENKEEGEEGRPDNEDNRCLICPG 180
Query: 224 SPSFRVYFVEETQDDKENVEMKDAG-MEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKK 283
SPSFRVYFVE+T +DK+NVEM D G MED S KKSPS DSVESS+S KS EGQENK +KK
Sbjct: 181 SPSFRVYFVEQTPNDKQNVEMNDDGDMEDASLKKSPSRDSVESSSSTKSNEGQENKTIKK 240
Query: 284 GKKGTTFNRVISKKRPVGVGVKNLLNVKS-CYHLSCSGNDRASLLARKAE 317
GKKGTT NR S++RPVGVG+K+LLNV + CYHLSC+GNDR + LARKAE
Sbjct: 241 GKKGTTLNRAGSRERPVGVGLKSLLNVNNCCYHLSCTGNDRVNHLARKAE 267
BLAST of Lsi06G016660 vs. ExPASy TrEMBL
Match:
A0A6J1JK15 (uncharacterized protein LOC111485806 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485806 PE=4 SV=1)
HSP 1 Score: 265.8 bits (678), Expect = 2.4e-67
Identity = 166/282 (58.87%), Postives = 198/282 (70.21%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGE-SEEN 103
MGCGNSKL PEGE I P IRPLL R+KF E RKRKNGT+LRD LSKKVLL +GE EEN
Sbjct: 1 MGCGNSKLTPEGESILPMIRPLLFRTKFAEFRKRKNGTHLRDTALSKKVLLTEGEIEEEN 60
Query: 104 SML-VDNRKSMCCSHEGSTNEHDSASAIPLSNNATKDGEQSNHLLE-EVPLTNVQLKTIH 163
S+L V NR + SH+G T +Q NH E + P N L+
Sbjct: 61 SILAVHNRNCIYGSHDGKT--------------ICLHTKQENHKDEHDSPNANHPLEQHK 120
Query: 164 P-DETPDLELKQDKTMDD-HKCIQQGDDNKK-EGEEGRADNEENRGFICPGSPSFRVYFV 223
P D ++LK+DKTM++ HK +++GDD K EGEEGR DNE+NR ICPGSPSFRVYFV
Sbjct: 121 PNDNGTRVKLKEDKTMNNQHKAVEEGDDESKGEGEEGRPDNEDNRCLICPGSPSFRVYFV 180
Query: 224 EETQDDKENVEMKDAG-MEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKKGKKGTTFNR 283
E+T ++K+NVEM D G MED S KKSPS DSVES++S KS E QE K +KKGKKGTT NR
Sbjct: 181 EQTPNEKQNVEMNDDGDMEDASLKKSPSRDSVESTSSTKSNECQEKKTIKKGKKGTTLNR 240
Query: 284 VISKKRPVGVGVKNLLNVKS-CYHLSCSGNDRASLLARKAEA 318
S+KRPVGVG+K+LLNV + CYHLSC+GNDR + L KAE+
Sbjct: 241 AGSRKRPVGVGLKSLLNVNNCCYHLSCTGNDRGNHLPIKAES 268
BLAST of Lsi06G016660 vs. NCBI nr
Match:
XP_008464387.1 (PREDICTED: uncharacterized protein LOC103502290 [Cucumis melo])
HSP 1 Score: 409.1 bits (1050), Expect = 3.6e-110
Identity = 225/291 (77.32%), Postives = 251/291 (86.25%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 103
MGCGNSKLNPEGEL+PPRIRPLL+R+KF+ELRKRKNGT+LRDG LSKKVLLK+GES EEN
Sbjct: 7 MGCGNSKLNPEGELVPPRIRPLLVRNKFLELRKRKNGTHLRDGALSKKVLLKEGESEEEN 66
Query: 104 SMLVDNR----KSMCCSHEGST------NEHDSASAIPLSN---NATKDGEQSNHLLEEV 163
+M VDNR + C + + T +EH+SAS IP SN NATK+GEQSN +LEE
Sbjct: 67 AMFVDNRHECGSTKCLASQQHTINNATKDEHNSASTIPPSNNDANATKNGEQSNRILEEE 126
Query: 164 PLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FICP 223
P ++QLKT HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG ICP
Sbjct: 127 PRPHIQLKTTHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSIICP 186
Query: 224 GSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMK 283
GSPSFR YFVEETQDDKE VEMKDA GM DVSHKKSPSHDSVES+TSAKS EGQENKV+K
Sbjct: 187 GSPSFRFYFVEETQDDKEKVEMKDAGGMGDVSHKKSPSHDSVESTTSAKSGEGQENKVIK 246
Query: 284 KGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 318
KGKKGTTFNRVISK+RPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 247 KGKKGTTFNRVISKRRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 297
BLAST of Lsi06G016660 vs. NCBI nr
Match:
KAA0057746.1 (ABC transporter F family member 4-like [Cucumis melo var. makuwa] >TYJ98429.1 ABC transporter F family member 4-like [Cucumis melo var. makuwa])
HSP 1 Score: 409.1 bits (1050), Expect = 3.6e-110
Identity = 225/291 (77.32%), Postives = 251/291 (86.25%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 103
MGCGNSKLNPEGEL+PPRIRPLL+R+KF+ELRKRKNGT+LRDG LSKKVLLK+GES EEN
Sbjct: 1 MGCGNSKLNPEGELVPPRIRPLLVRNKFLELRKRKNGTHLRDGALSKKVLLKEGESEEEN 60
Query: 104 SMLVDNR----KSMCCSHEGST------NEHDSASAIPLSN---NATKDGEQSNHLLEEV 163
+M VDNR + C + + T +EH+SAS IP SN NATK+GEQSN +LEE
Sbjct: 61 AMFVDNRHECGSTKCLASQQHTINNATKDEHNSASTIPPSNNDANATKNGEQSNRILEEE 120
Query: 164 PLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FICP 223
P ++QLKT HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG ICP
Sbjct: 121 PRPHIQLKTTHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSIICP 180
Query: 224 GSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMK 283
GSPSFR YFVEETQDDKE VEMKDA GM DVSHKKSPSHDSVES+TSAKS EGQENKV+K
Sbjct: 181 GSPSFRFYFVEETQDDKEKVEMKDAGGMGDVSHKKSPSHDSVESTTSAKSGEGQENKVIK 240
Query: 284 KGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 318
KGKKGTTFNRVISK+RPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 KGKKGTTFNRVISKRRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 291
BLAST of Lsi06G016660 vs. NCBI nr
Match:
XP_011649820.1 (probable DNA-directed RNA polymerase I subunit RPA43 isoform X1 [Cucumis sativus])
HSP 1 Score: 397.9 bits (1021), Expect = 8.2e-107
Identity = 221/292 (75.68%), Postives = 245/292 (83.90%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 103
MGCGNSKLNP GEL+PPRIRPL +R+K +ELRKRKNGT+LRDG LSKKVLLKDGES EEN
Sbjct: 1 MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60
Query: 104 SMLVDNR----KSMCCSHEGSTN-------EHDSASAIPLSNN---ATKDGEQSNHLLEE 163
+M VDNR + C + + TN EH+SAS IP SNN ATK GEQSNH+LEE
Sbjct: 61 AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120
Query: 164 VPLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FIC 223
P ++QLK HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG FIC
Sbjct: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC 180
Query: 224 PGSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVM 283
PGSPSFR+YFVEETQDDKE VEMKDA GM DVSHKKSPS DSVES+TSAK EGQENK +
Sbjct: 181 PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI 240
Query: 284 KKGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 318
KKGKK TTFNRV+SKKRPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 292
BLAST of Lsi06G016660 vs. NCBI nr
Match:
KAE8652373.1 (hypothetical protein Csa_013810 [Cucumis sativus])
HSP 1 Score: 295.4 bits (755), Expect = 5.7e-76
Identity = 179/290 (61.72%), Postives = 199/290 (68.62%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 103
MGCGNSKLNP GEL+PPRIRPL +R+K +ELRKRKNGT+LRDG LSKKVLLKDGES EEN
Sbjct: 1 MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60
Query: 104 SMLVDNR----KSMCCSHEGSTN-------EHDSASAIPLSNN---ATKDGEQSNHLLEE 163
+M VDNR + C + + TN EH+SAS IP SNN ATK GEQSNH+LEE
Sbjct: 61 AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120
Query: 164 VPLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDDNKKEGEEGRADNEENRGFICPG 223
P ++QLK HPD+TP LELKQDKTM++HK
Sbjct: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHK----------------------------- 180
Query: 224 SPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKK 283
EMKDA GM DVSHKKSPS DSVES+TSAK EGQENK +KK
Sbjct: 181 ------------------FEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAIKK 240
Query: 284 GKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 318
GKK TTFNRV+SKKRPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 GKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 243
BLAST of Lsi06G016660 vs. NCBI nr
Match:
XP_022921428.1 (uncharacterized protein LOC111429712 [Cucurbita moschata])
HSP 1 Score: 280.4 bits (716), Expect = 1.9e-71
Identity = 173/290 (59.66%), Postives = 206/290 (71.03%), Query Frame = 0
Query: 44 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGE-SEEN 103
MGCGNSKL PEGE I P IRPLL R+KF E RKRKNGT+LR+ LSKKVLLK+GE EEN
Sbjct: 1 MGCGNSKLTPEGESILPMIRPLLFRTKFAEFRKRKNGTHLRETALSKKVLLKEGEIEEEN 60
Query: 104 SML-VDNRKSMCCSHEGST-----------NEHDSASAIPLSNNATKDGEQSNHLLEEVP 163
S+L V NR S+ SH+G T +EHDS +A NHLLE+
Sbjct: 61 SILPVHNRNSIYGSHDGKTICLHTKQENHMDEHDSPNA--------------NHLLEQHK 120
Query: 164 LTNVQLKTIHPDETPDLELKQDKTMDDHK-CIQQGDD-NKKEGEEGRADNEENRGFICPG 223
D +ELK++KTM++ + +++GDD NK+EGEEGR DNE+NR ICPG
Sbjct: 121 PN---------DNGTRVELKENKTMNNQRTAVEEGDDENKEEGEEGRPDNEDNRCLICPG 180
Query: 224 SPSFRVYFVEETQDDKENVEMKDAG-MEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKK 283
SPSFRVYFVE+T +DK+NVEM D G MED S KKSPS DSVESS+S KS EGQENK +KK
Sbjct: 181 SPSFRVYFVEQTPNDKQNVEMNDDGDMEDASLKKSPSRDSVESSSSTKSNEGQENKTIKK 240
Query: 284 GKKGTTFNRVISKKRPVGVGVKNLLNVKS-CYHLSCSGNDRASLLARKAE 317
GKKGTT NR S++RPVGVG+K+LLNV + CYHLSC+GNDR + LARKAE
Sbjct: 241 GKKGTTLNRAGSRERPVGVGLKSLLNVNNCCYHLSCTGNDRVNHLARKAE 267
BLAST of Lsi06G016660 vs. TAIR 10
Match:
AT5G50830.2 (unknown protein; Has 4750 Blast hits to 3160 proteins in 341 species: Archae - 14; Bacteria - 239; Metazoa - 1329; Fungi - 394; Plants - 197; Viruses - 79; Other Eukaryotes - 2498 (source: NCBI BLink). )
HSP 1 Score: 63.9 bits (154), Expect = 2.6e-10
Identity = 89/299 (29.77%), Postives = 137/299 (45.82%), Query Frame = 0
Query: 44 MGCGNSKLN-------PEGELI--PPRIRPLLLRSKFMELRKRKNGTNLRDG-TLSKKVL 103
MGCG S+L EG ++ P IRP LLR + E++KR + L+ TLSKK L
Sbjct: 1 MGCGGSRLGGVATTRAEEGGVVPLPAGIRP-LLRRRLEEMKKRSHAGVLKGSQTLSKKEL 60
Query: 104 LKDGESEENSMLVDNRKSMCCSHE-GSTNEHDSASAIPLSNNATKDGEQSNHLLEEVPLT 163
L+ SE+ +N S+ S + +H+ + + + EEV +
Sbjct: 61 LRHNSSEDGEDTEENDGSLKASAKVAPAPDHNVEEKKEVIYEKIPSKDDVKEVKEEVVVN 120
Query: 164 NVQLKTIHPD-------ETPDLELKQDKTMDDHKCI-----QQGDDNKK-EGEEGRADNE 223
+ H D E ++ KQ++ D + ++GDD K + +EG +N
Sbjct: 121 KQEEDNHHQDVVEKQEEENKEVVKKQEEENHDDDVVVINVKKEGDDGKNHDVDEGSINNF 180
Query: 224 ENRGFICPGSPSFRVYFVE-ETQDDKENVEMKDAGMEDVSHKKSPSHDSVESSTSAKSVE 283
+ R I PGSPSFRVY V+ + DD E +++DA +KS +SV +T K V+
Sbjct: 181 DER-MIGPGSPSFRVYCVDVPSDDDDEEKDVEDA-------RKSMETESV--TTEIKEVD 240
Query: 284 GQENKVMKKGKKGTTFNRVISKKRPVGVGVKNLLNVKS-CY-HLSCSGNDRASLLARKA 316
G K KK ++G F + + K L NV + CY C GN + L+ K+
Sbjct: 241 GSIVKKEKKERRGKRFGIALPR--------KYLANVTAPCYAGGGCMGNTHSRLVQEKS 280
BLAST of Lsi06G016660 vs. TAIR 10
Match:
AT5G50830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4984 Blast hits to 3288 proteins in 342 species: Archae - 12; Bacteria - 257; Metazoa - 1366; Fungi - 452; Plants - 199; Viruses - 77; Other Eukaryotes - 2621 (source: NCBI BLink). )
HSP 1 Score: 58.5 bits (140), Expect = 1.1e-08
Identity = 87/299 (29.10%), Postives = 135/299 (45.15%), Query Frame = 0
Query: 44 MGCGNSKLN-------PEGELI--PPRIRPLLLRSKFMELRKRKNGTNLRDG-TLSKKVL 103
MGCG S+L EG ++ P IRP LLR + E++KR + L+ TLSKK L
Sbjct: 1 MGCGGSRLGGVATTRAEEGGVVPLPAGIRP-LLRRRLEEMKKRSHAGVLKGSQTLSKKEL 60
Query: 104 LKDGESEENSMLVDNRKSMCCSHE-GSTNEHDSASAIPLSNNATKDGEQSNHLLEEVPLT 163
L+ SE+ +N S+ S + +H+ + + + EEV +
Sbjct: 61 LRHNSSEDGEDTEENDGSLKASAKVAPAPDHNVEEKKEVIYEKIPSKDDVKEVKEEVVVN 120
Query: 164 NVQLKTIHPD-------ETPDLELKQDKTMDDHKCI-----QQGDDNKK-EGEEGRADNE 223
+ H D E ++ KQ++ D + ++GDD K + +EG +N
Sbjct: 121 KQEEDNHHQDVVEKQEEENKEVVKKQEEENHDDDVVVINVKKEGDDGKNHDVDEGSINNF 180
Query: 224 ENRGFICPGSPSFRVYFVE-ETQDDKENVEMKDAGMEDVSHKKSPSHDSVESSTSAKSVE 283
+ R I PGSPSFRVY V+ + DD E +++DA +KS +SV T+ +
Sbjct: 181 DER-MIGPGSPSFRVYCVDVPSDDDDEEKDVEDA-------RKSMETESV---TTEIKED 240
Query: 284 GQENKVMKKGKKGTTFNRVISKKRPVGVGVKNLLNVKS-CY-HLSCSGNDRASLLARKA 316
G K KK ++G F + + K L NV + CY C GN + L+ K+
Sbjct: 241 GSIVKKEKKERRGKRFGIALPR--------KYLANVTAPCYAGGGCMGNTHSRLVQEKS 279
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BHA4 | 1.7e-110 | 77.32 | ABC transporter F family member 4-like OS=Cucumis melo var. makuwa OX=1194695 GN... | [more] |
A0A1S3CLT6 | 1.7e-110 | 77.32 | uncharacterized protein LOC103502290 OS=Cucumis melo OX=3656 GN=LOC103502290 PE=... | [more] |
A0A0A0LNT2 | 4.0e-107 | 75.68 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000760 PE=4 SV=1 | [more] |
A0A6J1E3W4 | 9.2e-72 | 59.66 | uncharacterized protein LOC111429712 OS=Cucurbita moschata OX=3662 GN=LOC1114297... | [more] |
A0A6J1JK15 | 2.4e-67 | 58.87 | uncharacterized protein LOC111485806 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
Match Name | E-value | Identity | Description | |
XP_008464387.1 | 3.6e-110 | 77.32 | PREDICTED: uncharacterized protein LOC103502290 [Cucumis melo] | [more] |
KAA0057746.1 | 3.6e-110 | 77.32 | ABC transporter F family member 4-like [Cucumis melo var. makuwa] >TYJ98429.1 AB... | [more] |
XP_011649820.1 | 8.2e-107 | 75.68 | probable DNA-directed RNA polymerase I subunit RPA43 isoform X1 [Cucumis sativus... | [more] |
KAE8652373.1 | 5.7e-76 | 61.72 | hypothetical protein Csa_013810 [Cucumis sativus] | [more] |
XP_022921428.1 | 1.9e-71 | 59.66 | uncharacterized protein LOC111429712 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
AT5G50830.2 | 2.6e-10 | 29.77 | unknown protein; Has 4750 Blast hits to 3160 proteins in 341 species: Archae - 1... | [more] |
AT5G50830.1 | 1.1e-08 | 29.10 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... | [more] |