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Lsi06G016190 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAGTCAACACTCAAAGAAGACCACACATTCTTCTTGCTGCTTGTGGAAGTGTTGCTGCAGTAAAGTTTAGAAGCCTATGCCATGGTTTTTCTGAATGGGCCGAAGTTCGAGCAGTTGCCACAAGGGCAGCATTGTTCTTCATTGACCGAGCATCCCTCCCAAAGAACGTCTTTCTTTACATTGACGATGATGATTGGGCCAATTGGAGGAAACTTGGTGACAATGTCCTTCACATTCAGCTTTGCAACTGGGCTGATATTATGGTTATCGCTCCACTCTCAGCAAACACACTTGGAAAGGTTATATTATATGTTCGATCTTCATTTATATAAATCTTGCCTTTTAGGCTCTTACTTCAAGCTAAACATATAAATTAACTACCAACTAAACTTATATTGTAGTTAGCAGGCAGGAAATCAATGTCACTTGATGCAATAGAATCTTTGTGAATCAGCCCTTTAGTTTTGTGCAGCTTTTAAGGGATGTCCCCTAGCTCTTCATTTAACTTAAACATTTCTGTTAGAACCTACAGAATATAGTTAGTGTATCTAGAACCTTAGTCCTGCAACTTTAATTTTGATGGACTGAACTTCTTAGATTGGGGCAACTAACATCTCAGAGGGTGATATTGTGCATTTGGGTTATCTTTTTTTGTATTTTGATTCAAGTTATTTGATGAGTAACCTCTCTAATCAAAAGTAGAGATCCTGGCATCACATGAAAGTTCTTTACCAAATATTTCAGTTTCTTTTATTCTAGAGATAGAGCTGGTGTGAACATTGCCTATAAAGTTGATTTGTTATGTCTGTTGTCCTGTTTATCTGGCATTCACCAATTGGCTTAACATTCAATCCCAATCTATGTCGTGGTTTAGTAAAACTTTACTCATGTCTATGTTTTTATTAGATTGCGGGAGGATTGTGTGATAATCTATTAACTTGCATTGTACGAGCATGGGACTACAGCAAGCCTTTATTTGTTGCACCTGCCATGAACGCCTTAATGTGGAAAAATTCTTTCACTGAAAAACATCTTGTGTCTGTTGATGATCTTGGAATTACTCTTATACGACCAAGGACAAGTGGTGGGGAACAATGCAATGGCGTCATGGCCGAACCGAGCCACATTTCCGCAACTGTGATACTATTCTTAGAGTTACAACGTAAGAAACAAGAAACAGCCGAGCAGTAACATAACCCTCTGTGACTGTGTCCTTGTGTGCTTTGTCTGAGATTGGGCTGGGTAGGCTGTAAATGATTTTTGTATTGTTTACTTTTTTTTTTTCTCTTCCCAATTTTATCGTATCACTTGTAATCTTACTTGGCATCTTTTTGTCCGGTGGATGCCTAGAACCCATA ATGCAAGTCAACACTCAAAGAAGACCACACATTCTTCTTGCTGCTTGTGGAAGTGTTGCTGCAGTAAAGTTTAGAAGCCTATGCCATGGTTTTTCTGAATGGGCCGAAGTTCGAGCAGTTGCCACAAGGGCAGCATTGTTCTTCATTGACCGAGCATCCCTCCCAAAGAACGTCTTTCTTTACATTGACGATGATGATTGGGCCAATTGGAGGAAACTTGGTGACAATGTCCTTCACATTCAGCTTTGCAACTGGGCTGATATTATGGTTATCGCTCCACTCTCAGCAAACACACTTGGAAAGATTGCGGGAGGATTGTGTGATAATCTATTAACTTGCATTGTACGAGCATGGGACTACAGCAAGCCTTTATTTGTTGCACCTGCCATGAACGCCTTAATGTGGAAAAATTCTTTCACTGAAAAACATCTTGTGTCTGTTGATGATCTTGGAATTACTCTTATACGACCAAGGACAAGTGGTGGGGAACAATGCAATGGCGTCATGGCCGAACCGAGCCACATTTCCGCAACTGTGATACTATTCTTAGAGTTACAACGTAAGAAACAAGAAACAGCCGAGCAGTAACATAACCCTCTGTGACTGTGTCCTTGTGTGCTTTGTCTGAGATTGGGCTGGGTAGGCTGTAAATGATTTTTGTATTGTTTACTTTTTTTTTTTCTCTTCCCAATTTTATCGTATCACTTGTAATCTTACTTGGCATCTTTTTGTCCGGTGGATGCCTAGAACCCATA ATGCAAGTCAACACTCAAAGAAGACCACACATTCTTCTTGCTGCTTGTGGAAGTGTTGCTGCAGTAAAGTTTAGAAGCCTATGCCATGGTTTTTCTGAATGGGCCGAAGTTCGAGCAGTTGCCACAAGGGCAGCATTGTTCTTCATTGACCGAGCATCCCTCCCAAAGAACGTCTTTCTTTACATTGACGATGATGATTGGGCCAATTGGAGGAAACTTGGTGACAATGTCCTTCACATTCAGCTTTGCAACTGGGCTGATATTATGGTTATCGCTCCACTCTCAGCAAACACACTTGGAAAGATTGCGGGAGGATTGTGTGATAATCTATTAACTTGCATTGTACGAGCATGGGACTACAGCAAGCCTTTATTTGTTGCACCTGCCATGAACGCCTTAATGTGGAAAAATTCTTTCACTGAAAAACATCTTGTGTCTGTTGATGATCTTGGAATTACTCTTATACGACCAAGGACAAGTGGTGGGGAACAATGCAATGGCGTCATGGCCGAACCGAGCCACATTTCCGCAACTGTGATACTATTCTTAGAGTTACAACGTAAGAAACAAGAAACAGCCGAGCAGTAA MQVNTQRRPHILLAACGSVAAVKFRSLCHGFSEWAEVRAVATRAALFFIDRASLPKNVFLYIDDDDWANWRKLGDNVLHIQLCNWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNALMWKNSFTEKHLVSVDDLGITLIRPRTSGGEQCNGVMAEPSHISATVILFLELQRKKQETAEQ Homology
BLAST of Lsi06G016190 vs. ExPASy Swiss-Prot
Match: Q9SWE5 (Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana OX=3702 GN=HAL3A PE=1 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 1.2e-71 Identity = 129/194 (66.49%), Postives = 159/194 (81.96%), Query Frame = 0
BLAST of Lsi06G016190 vs. ExPASy Swiss-Prot
Match: P94063 (Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana OX=3702 GN=HAL3B PE=2 SV=2) HSP 1 Score: 270.8 bits (691), Expect = 1.2e-71 Identity = 130/194 (67.01%), Postives = 160/194 (82.47%), Query Frame = 0
BLAST of Lsi06G016190 vs. ExPASy Swiss-Prot
Match: Q69K55 (Phosphopantothenoylcysteine decarboxylase OS=Oryza sativa subsp. japonica OX=39947 GN=HAL3 PE=1 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 7.4e-69 Identity = 124/182 (68.13%), Postives = 145/182 (79.67%), Query Frame = 0
BLAST of Lsi06G016190 vs. ExPASy Swiss-Prot
Match: Q8BZB2 (Phosphopantothenoylcysteine decarboxylase OS=Mus musculus OX=10090 GN=Ppcdc PE=1 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33 Identity = 76/179 (42.46%), Postives = 102/179 (56.98%), Query Frame = 0
BLAST of Lsi06G016190 vs. ExPASy Swiss-Prot
Match: Q96CD2 (Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens OX=9606 GN=PPCDC PE=1 SV=2) HSP 1 Score: 141.4 bits (355), Expect = 1.1e-32 Identity = 73/171 (42.69%), Postives = 99/171 (57.89%), Query Frame = 0
BLAST of Lsi06G016190 vs. ExPASy TrEMBL
Match: A0A6J1JAP4 (phosphopantothenoylcysteine decarboxylase-like OS=Cucurbita maxima OX=3661 GN=LOC111485088 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 3.8e-92 Identity = 164/194 (84.54%), Postives = 174/194 (89.69%), Query Frame = 0
BLAST of Lsi06G016190 vs. ExPASy TrEMBL
Match: A0A5D3BIF0 (Putative phosphopantothenoylcysteine decarboxylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00630 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 3.8e-92 Identity = 166/196 (84.69%), Postives = 180/196 (91.84%), Query Frame = 0
BLAST of Lsi06G016190 vs. ExPASy TrEMBL
Match: A0A1S3CLH0 (probable phosphopantothenoylcysteine decarboxylase OS=Cucumis melo OX=3656 GN=LOC103502332 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 3.8e-92 Identity = 166/196 (84.69%), Postives = 180/196 (91.84%), Query Frame = 0
BLAST of Lsi06G016190 vs. ExPASy TrEMBL
Match: A0A0A0LP03 (Flavoprotein domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G002720 PE=4 SV=1) HSP 1 Score: 344.7 bits (883), Expect = 2.5e-91 Identity = 162/196 (82.65%), Postives = 180/196 (91.84%), Query Frame = 0
BLAST of Lsi06G016190 vs. ExPASy TrEMBL
Match: A0A6J1E1V3 (phosphopantothenoylcysteine decarboxylase-like OS=Cucurbita moschata OX=3662 GN=LOC111430070 PE=4 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 3.5e-90 Identity = 160/194 (82.47%), Postives = 171/194 (88.14%), Query Frame = 0
BLAST of Lsi06G016190 vs. NCBI nr
Match: XP_038880127.1 (probable phosphopantothenoylcysteine decarboxylase [Benincasa hispida]) HSP 1 Score: 380.6 bits (976), Expect = 8.3e-102 Identity = 181/196 (92.35%), Postives = 189/196 (96.43%), Query Frame = 0
BLAST of Lsi06G016190 vs. NCBI nr
Match: XP_008464452.1 (PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Cucumis melo] >KAA0057780.1 putative phosphopantothenoylcysteine decarboxylase [Cucumis melo var. makuwa] >TYJ98461.1 putative phosphopantothenoylcysteine decarboxylase [Cucumis melo var. makuwa]) HSP 1 Score: 347.4 bits (890), Expect = 7.8e-92 Identity = 166/196 (84.69%), Postives = 180/196 (91.84%), Query Frame = 0
BLAST of Lsi06G016190 vs. NCBI nr
Match: XP_022987557.1 (phosphopantothenoylcysteine decarboxylase-like [Cucurbita maxima] >XP_022987558.1 phosphopantothenoylcysteine decarboxylase-like [Cucurbita maxima]) HSP 1 Score: 347.4 bits (890), Expect = 7.8e-92 Identity = 164/194 (84.54%), Postives = 174/194 (89.69%), Query Frame = 0
BLAST of Lsi06G016190 vs. NCBI nr
Match: XP_011652837.1 (probable phosphopantothenoylcysteine decarboxylase [Cucumis sativus] >XP_031738069.1 probable phosphopantothenoylcysteine decarboxylase [Cucumis sativus] >XP_031738073.1 probable phosphopantothenoylcysteine decarboxylase [Cucumis sativus] >KGN63503.1 hypothetical protein Csa_013175 [Cucumis sativus]) HSP 1 Score: 344.7 bits (883), Expect = 5.1e-91 Identity = 162/196 (82.65%), Postives = 180/196 (91.84%), Query Frame = 0
BLAST of Lsi06G016190 vs. NCBI nr
Match: XP_023515784.1 (phosphopantothenoylcysteine decarboxylase-like [Cucurbita pepo subsp. pepo] >XP_023515785.1 phosphopantothenoylcysteine decarboxylase-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90 Identity = 161/194 (82.99%), Postives = 172/194 (88.66%), Query Frame = 0
BLAST of Lsi06G016190 vs. TAIR 10
Match: AT1G48605.1 (Flavoprotein ) HSP 1 Score: 270.8 bits (691), Expect = 8.7e-73 Identity = 130/194 (67.01%), Postives = 160/194 (82.47%), Query Frame = 0
BLAST of Lsi06G016190 vs. TAIR 10
Match: AT3G18030.1 (HAL3-like protein A ) HSP 1 Score: 270.8 bits (691), Expect = 8.7e-73 Identity = 129/194 (66.49%), Postives = 159/194 (81.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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