Lsi06G016140 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G016140
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Elongator complex protein 3
Location	chr06: 26474889 .. 26475386 (+)
RNA-Seq Expression	Lsi06G016140
Synteny	Lsi06G016140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTGCAGTGGTGGCGGAATCAAATCGGAAACTGCCTCGACCTGGCCGGGGCGGCTTCGAAGCTCATGGATTTTCCGAGGAAGAAGCCCGAGTTCGTGCCATTGCTGAGATTGTTAACTCCATGGTTGACCTTTCACGTAAAGGGCAAAATGTCGATCTGAACGCTCTGAAATCCGCCGCCTGCCGGAAGTATGGCCTTGCACGGGCCCCAAAGCTCGTCGAAATGATCGCAGCGCTTCCTGAGTCGGACCGCGAGGCCCTGTTACCGAAGCTTCGAGCCAAGCCGGTTCGAACAGCCTCCGGTATTGCAGTCGTAGCCGTGATGTCTAAGCCGCATCGATGCCCTCATATTGCTACGACGGGGAATATTTGTGTATACTGCCCCGGAGGACCTGATTCGGACTTTGAGTACAGTACTCAATCTTACACTGGTTATGAGCCTACAAGCATGCGTGCAATTCGTGCAAGGTTGGTTGTAACTTGTAACTTCTAA

mRNA sequence

ATGGCGACTGCAGTGGTGGCGGAATCAAATCGGAAACTGCCTCGACCTGGCCGGGGCGGCTTCGAAGCTCATGGATTTTCCGAGGAAGAAGCCCGAGTTCGTGCCATTGCTGAGATTGTTAACTCCATGGTTGACCTTTCACGTAAAGGGCAAAATGTCGATCTGAACGCTCTGAAATCCGCCGCCTGCCGGAAGTATGGCCTTGCACGGGCCCCAAAGCTCGTCGAAATGATCGCAGCGCTTCCTGAGTCGGACCGCGAGGCCCTGTTACCGAAGCTTCGAGCCAAGCCGGTTCGAACAGCCTCCGGTATTGCAGTCGTAGCCGTGATGTCTAAGCCGCATCGATGCCCTCATATTGCTACGACGGGGAATATTTGTGTATACTGCCCCGGAGGACCTGATTCGGACTTTGAGTACAGTACTCAATCTTACACTGGTTATGAGCCTACAAGCATGCGTGCAATTCGTGCAAGGTTGGTTGTAACTTGTAACTTCTAA

Coding sequence (CDS)

ATGGCGACTGCAGTGGTGGCGGAATCAAATCGGAAACTGCCTCGACCTGGCCGGGGCGGCTTCGAAGCTCATGGATTTTCCGAGGAAGAAGCCCGAGTTCGTGCCATTGCTGAGATTGTTAACTCCATGGTTGACCTTTCACGTAAAGGGCAAAATGTCGATCTGAACGCTCTGAAATCCGCCGCCTGCCGGAAGTATGGCCTTGCACGGGCCCCAAAGCTCGTCGAAATGATCGCAGCGCTTCCTGAGTCGGACCGCGAGGCCCTGTTACCGAAGCTTCGAGCCAAGCCGGTTCGAACAGCCTCCGGTATTGCAGTCGTAGCCGTGATGTCTAAGCCGCATCGATGCCCTCATATTGCTACGACGGGGAATATTTGTGTATACTGCCCCGGAGGACCTGATTCGGACTTTGAGTACAGTACTCAATCTTACACTGGTTATGAGCCTACAAGCATGCGTGCAATTCGTGCAAGGTTGGTTGTAACTTGTAACTTCTAA

Protein sequence

MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARLVVTCNF

Homology

[Close]

BLAST of Lsi06G016140 vs. ExPASy Swiss-Prot
Match: Q93ZR1 (Elongator complex protein 3 OS=Arabidopsis thaliana OX=3702 GN=HAG3 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 9.7e-70
Identity = 130/159 (81.76%), Postives = 146/159 (91.82%), Query Frame = 0


Query: 1   MATAVVAESN-RKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALK 60
           MATAVV     +K PRPG+GG++  G +EEEARVRAI+EIV++M++ S + +NVDLNA+K
Sbjct: 1   MATAVVMNGELKKQPRPGKGGYQGRGLTEEEARVRAISEIVSTMIERSHRNENVDLNAIK 60

Query: 61  SAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 120
           +AACRKYGLARAPKLVEMIAALP+S+RE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHI
Sbjct: 61  TAACRKYGLARAPKLVEMIAALPDSERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 120

Query: 121 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159

[Close]

BLAST of Lsi06G016140 vs. ExPASy Swiss-Prot
Match: Q7X7L3 (Elongator complex protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ELP3 PE=2 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.6e-67
Identity = 134/167 (80.24%), Postives = 146/167 (87.43%), Query Frame = 0


Query: 1   MATAVVA--------ESNRKLPRPGRGGFE-AHGFSEEEARVRAIAEIVNSMVDLSRKGQ 60
           MATAV A        +  R+ P PGRGG     G SEEEARVRAIAEIV++M +LSR+G+
Sbjct: 1   MATAVAAAGGGGGGEQPRRRKPAPGRGGVVLPAGLSEEEARVRAIAEIVSAMGELSRRGE 60

Query: 61  NVDLNALKSAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMS 120
           +VDLNALKSAACR+YGLARAPKLVEMIAA+PE+DR ALLP+LRAKPVRTASGIAVVAVMS
Sbjct: 61  DVDLNALKSAACRRYGLARAPKLVEMIAAVPEADRAALLPRLRAKPVRTASGIAVVAVMS 120

Query: 121 KPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           KPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 KPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 167

[Close]

BLAST of Lsi06G016140 vs. ExPASy Swiss-Prot
Match: Q5ZHS1 (Elongator complex protein 3 OS=Gallus gallus OX=9031 GN=ELP3 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 5.7e-46
Identity = 89/139 (64.03%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 20  GFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIA 79
           G +    S  E  +  IA+I+  +++   +G++V+LN LK+    KYGL+  P+LV++IA
Sbjct: 2   GQKRKDLSHAELMMMTIADIIKQLIEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIA 61

Query: 80  ALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEY 139
           A+P   R+AL+PKL+AKP+RTASGIAVVAVM KPHRCPHI  TGNICVYCPGGPDSDFEY
Sbjct: 62  AVPPQHRKALVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEY 121

Query: 140 STQSYTGYEPTSMRAIRAR 159
           STQSYTGYEPTSMRAIRAR
Sbjct: 122 STQSYTGYEPTSMRAIRAR 140

[Close]

BLAST of Lsi06G016140 vs. ExPASy Swiss-Prot
Match: Q9CZX0 (Elongator complex protein 3 OS=Mus musculus OX=10090 GN=Elp3 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45
Identity = 87/132 (65.91%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 27  SEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPESDR 86
           S  E  +  I +++  +V+   +G++VDLN +K+    KYGLA  P+LV++IAA+P   R
Sbjct: 10  SPAELMMLTIGDVIKQLVEAHEQGKDVDLNKMKTKTAAKYGLASQPRLVDIIAAVPPHYR 69

Query: 87  EALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTG 146
           + L+PKL+AKPVRTASGIAVVAVM KPHRCPHI+ TGNIC+YCPGGPDSDFEYSTQSYTG
Sbjct: 70  KILIPKLKAKPVRTASGIAVVAVMCKPHRCPHISFTGNICIYCPGGPDSDFEYSTQSYTG 129

Query: 147 YEPTSMRAIRAR 159
           YEPTSMRAIRAR
Sbjct: 130 YEPTSMRAIRAR 141

[Close]

BLAST of Lsi06G016140 vs. ExPASy Swiss-Prot
Match: Q9VQZ6 (Elongator complex protein 3 OS=Drosophila melanogaster OX=7227 GN=Elp3 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.2e-45
Identity = 88/134 (65.67%), Postives = 107/134 (79.85%), Query Frame = 0


Query: 25  GFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLARAPKLVEMIAALPES 84
           G S +E +V  I EI+  ++      ++V+LN +KS    KYGL  +P+LV++IAA+P+ 
Sbjct: 10  GLSRQERQVLVIGEIIQELLKAHEAKKDVNLNRMKSLVASKYGLDSSPRLVDIIAAVPQD 69

Query: 85  DREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSY 144
            ++ LLPKLRAKP+RTASGIAVVAVM KPHRCPHI  TGNICVYCPGGPDSDFEYSTQSY
Sbjct: 70  AKKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSY 129

Query: 145 TGYEPTSMRAIRAR 159
           TGYEPTSMRAIR+R
Sbjct: 130 TGYEPTSMRAIRSR 143

[Close]

BLAST of Lsi06G016140 vs. ExPASy TrEMBL
Match: A0A6J1C012 (Elongator complex protein 3 OS=Momordica charantia OX=3673 GN=LOC111007041 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.7e-82
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. ExPASy TrEMBL
Match: A0A5D3BHH9 (Elongator complex protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00810 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAMVAEPNRKLPRPGRGGFEGHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. ExPASy TrEMBL
Match: A0A5A7UW35 (Elongator complex protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00780 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAMVAEPNRKLPRPGRGGFEGHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. ExPASy TrEMBL
Match: A0A1S3CM22 (Elongator complex protein 3 OS=Cucumis melo OX=3656 GN=LOC103502347 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.2e-80
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAMVAEPNRKLPRPGRGGFEGHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. ExPASy TrEMBL
Match: A0A6J1KT98 (Elongator complex protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111496204 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.3e-80
Identity = 155/158 (98.10%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATAVVAES RKLPRPGRGGFE HGFSEEE RVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAVVAESARKLPRPGRGGFEGHGFSEEEGRVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. NCBI nr
Match: XP_022134894.1 (elongator complex protein 3 [Momordica charantia])

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-81
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. NCBI nr
Match: XP_038880764.1 (elongator complex protein 3 [Benincasa hispida])

HSP 1 Score: 308.9 bits (790), Expect = 2.6e-80
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATA+VAESNRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAMVAESNRKLPRPGRGGFEGHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGL+RAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLSRAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. NCBI nr
Match: XP_008464479.1 (PREDICTED: elongator complex protein 3 [Cucumis melo] >TYJ98479.1 elongator complex protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 308.1 bits (788), Expect = 4.4e-80
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAMVAEPNRKLPRPGRGGFEGHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. NCBI nr
Match: KAA0057795.1 (elongator complex protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 308.1 bits (788), Expect = 4.4e-80
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAMVAEPNRKLPRPGRGGFEGHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. NCBI nr
Match: XP_004138068.1 (elongator complex protein 3 [Cucumis sativus] >KGN63508.1 hypothetical protein Csa_013476 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 0


Query: 1   MATAVVAESNRKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60
           MATA+VAE NRKLPRPGRGGFE HGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS
Sbjct: 1   MATAMVAEPNRKLPRPGRGGFEGHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKS 60

Query: 61  AACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120
           AACRKYGLARAPKLVEMIAALPESDRE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA
Sbjct: 61  AACRKYGLARAPKLVEMIAALPESDRETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIA 120

Query: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 TTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 158

[Close]

BLAST of Lsi06G016140 vs. TAIR 10
Match: AT5G50320.1 (radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein )

HSP 1 Score: 264.2 bits (674), Expect = 6.9e-71
Identity = 130/159 (81.76%), Postives = 146/159 (91.82%), Query Frame = 0


Query: 1   MATAVVAESN-RKLPRPGRGGFEAHGFSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALK 60
           MATAVV     +K PRPG+GG++  G +EEEARVRAI+EIV++M++ S + +NVDLNA+K
Sbjct: 1   MATAVVMNGELKKQPRPGKGGYQGRGLTEEEARVRAISEIVSTMIERSHRNENVDLNAIK 60

Query: 61  SAACRKYGLARAPKLVEMIAALPESDREALLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 120
           +AACRKYGLARAPKLVEMIAALP+S+RE LLPKLRAKPVRTASGIAVVAVMSKPHRCPHI
Sbjct: 61  TAACRKYGLARAPKLVEMIAALPDSERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHI 120

Query: 121 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159
           ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR
Sbjct: 121 ATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRAR 159

The following BLAST results are available for this feature:

BLAST of Lsi06G016140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZR1	9.7e-70	81.76	Elongator complex protein 3 OS=Arabidopsis thaliana OX=3702 GN=HAG3 PE=1 SV=1	[more]
Q7X7L3	2.6e-67	80.24	Elongator complex protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ELP3 PE=...	[more]
Q5ZHS1	5.7e-46	64.03	Elongator complex protein 3 OS=Gallus gallus OX=9031 GN=ELP3 PE=2 SV=1	[more]
Q9CZX0	1.7e-45	65.91	Elongator complex protein 3 OS=Mus musculus OX=10090 GN=Elp3 PE=1 SV=1	[more]
Q9VQZ6	2.2e-45	65.67	Elongator complex protein 3 OS=Drosophila melanogaster OX=7227 GN=Elp3 PE=2 SV=1	[more]

BLAST of Lsi06G016140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C012	8.7e-82	100.00	Elongator complex protein 3 OS=Momordica charantia OX=3673 GN=LOC111007041 PE=3 ...	[more]
A0A5D3BHH9	2.2e-80	98.10	Elongator complex protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UW35	2.2e-80	98.10	Elongator complex protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3CM22	2.2e-80	98.10	Elongator complex protein 3 OS=Cucumis melo OX=3656 GN=LOC103502347 PE=3 SV=1	[more]
A0A6J1KT98	6.3e-80	98.10	Elongator complex protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111496204 PE=3 SV=...	[more]

BLAST of Lsi06G016140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134894.1	1.8e-81	100.00	elongator complex protein 3 [Momordica charantia]	[more]
XP_038880764.1	2.6e-80	98.10	elongator complex protein 3 [Benincasa hispida]	[more]
XP_008464479.1	4.4e-80	98.10	PREDICTED: elongator complex protein 3 [Cucumis melo] >TYJ98479.1 elongator comp...	[more]
KAA0057795.1	4.4e-80	98.10	elongator complex protein 3 [Cucumis melo var. makuwa]	[more]
XP_004138068.1	1.3e-79	97.47	elongator complex protein 3 [Cucumis sativus] >KGN63508.1 hypothetical protein C...	[more]

BLAST of Lsi06G016140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50320.1	6.9e-71	81.76	radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) ...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
IPR034687	Elongator complex protein 3-like	PANTHER	PTHR11135:SF7	ELONGATOR COMPLEX PROTEIN 3	coord: 2..159
IPR039661	ELP3/YhcC	PANTHER	PTHR11135	HISTONE ACETYLTRANSFERASE-RELATED	coord: 2..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G016140.1	Lsi06G016140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0009294	DNA mediated transformation
biological_process	GO:0035265	organ growth
biological_process	GO:0010928	regulation of auxin mediated signaling pathway
biological_process	GO:2000025	regulation of leaf formation
biological_process	GO:0090708	specification of plant organ axis polarity
biological_process	GO:0002926	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0033588	elongator holoenzyme complex
cellular_component	GO:0000791	euchromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0000049	tRNA binding
molecular_function	GO:0106261	tRNA uridine(34) acetyltransferase activity