Lsi06G014680 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G014680
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	mini zinc finger
Location	chr06: 25190290 .. 25190565 (-)
RNA-Seq Expression	Lsi06G014680
Synteny	Lsi06G014680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAAGGTTGGTGGTGGTGAAGAAATCTGATGGCTCTGGTGGCCGACGCTCCGGTTCGGGCTCGGTCGTGCGCTACGCGGAGTGCCAGAAGAATCACGCAGCAAAGCTCGGGGGGTTCGCAGTCGACGGTTGCCGGGAATTCATGGCAAGAGGAGAGGATGGAACTGAGGAGGCTCTCAATTGTGCTGCTTGTGGCTGCCACAGGAATTTTCATAGAAGGGAAGTGGATGCTGAAGTTGTTTTTGAGTATTCTCCTCCAAACTCCAATTAA

mRNA sequence

ATGAAGAAAAGGTTGGTGGTGGTGAAGAAATCTGATGGCTCTGGTGGCCGACGCTCCGGTTCGGGCTCGGTCGTGCGCTACGCGGAGTGCCAGAAGAATCACGCAGCAAAGCTCGGGGGGTTCGCAGTCGACGGTTGCCGGGAATTCATGGCAAGAGGAGAGGATGGAACTGAGGAGGCTCTCAATTGTGCTGCTTGTGGCTGCCACAGGAATTTTCATAGAAGGGAAGTGGATGCTGAAGTTGTTTTTGAGTATTCTCCTCCAAACTCCAATTAA

Coding sequence (CDS)

ATGAAGAAAAGGTTGGTGGTGGTGAAGAAATCTGATGGCTCTGGTGGCCGACGCTCCGGTTCGGGCTCGGTCGTGCGCTACGCGGAGTGCCAGAAGAATCACGCAGCAAAGCTCGGGGGGTTCGCAGTCGACGGTTGCCGGGAATTCATGGCAAGAGGAGAGGATGGAACTGAGGAGGCTCTCAATTGTGCTGCTTGTGGCTGCCACAGGAATTTTCATAGAAGGGAAGTGGATGCTGAAGTTGTTTTTGAGTATTCTCCTCCAAACTCCAATTAA

Protein sequence

MKKRLVVVKKSDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN

Homology

[Close]

BLAST of Lsi06G014680 vs. ExPASy Swiss-Prot
Match: Q2Q493 (Mini zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=MIF3 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-28
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEA 60
          MKKR VV+K+   S    S S S VRY ECQKNHAA +GG+AVDGCREFMA G D   +A
Sbjct: 1  MKKRQVVIKQRKSSYTMTS-SSSNVRYVECQKNHAANIGGYAVDGCREFMASGGD---DA 60

Query: 61 LNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          L CAACGCHRNFHRREVD EVV EYSPPN+N
Sbjct: 61 LTCAACGCHRNFHRREVDTEVVCEYSPPNAN 87

[Close]

BLAST of Lsi06G014680 vs. ExPASy Swiss-Prot
Match: Q9CA51 (Mini zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIF1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-27
Identity = 61/101 (60.40%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MKKRLVVVKK-----------SDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREF 60
           MKKR +V+K+           +  S    S   S VRY ECQKNHAA +GG+AVDGCREF
Sbjct: 2   MKKRQMVIKQRSRNSNTSSSWTTTSSSSSSSEISNVRYVECQKNHAANIGGYAVDGCREF 61

Query: 61  MARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNS 91
           MA G +GT +AL CAACGCHRNFHR+EVD EVV EYSPPN+
Sbjct: 62  MAAGVEGTVDALRCAACGCHRNFHRKEVDTEVVCEYSPPNA 102

[Close]

BLAST of Lsi06G014680 vs. ExPASy Swiss-Prot
Match: Q9LJW5 (Mini zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIF2 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.5e-24
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGRRSGSGS------VVRYAECQKNHAAKLGGFAVDGCREFMA-RG 60
          M+KR VV++++      RS S +       VRY ECQKNHAA +GG+AVDGCREFMA RG
Sbjct: 1  MRKRQVVLRRASPEEPSRSSSTASSLTVRTVRYGECQKNHAAAVGGYAVDGCREFMASRG 60

Query: 61 EDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNS 91
          E+GT  AL CAACGCHR+FHRRE++ EVV + + P S
Sbjct: 61 EEGTVAALTCAACGCHRSFHRREIETEVVCDCNSPPS 97

[Close]

BLAST of Lsi06G014680 vs. ExPASy Swiss-Prot
Match: B8BIU8 (Mini zinc finger protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=MIF1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-20
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 18 RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREV 77
          R  +  VVRY ECQ+NHAA +GG AVDGCREFMA G +GT  AL CAACGCHR+FHRREV
Sbjct: 26 RKENNKVVRYRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREV 85

Query: 78 DA 80
          +A
Sbjct: 86 EA 87

[Close]

BLAST of Lsi06G014680 vs. ExPASy Swiss-Prot
Match: Q2RB28 (Mini zinc finger protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MIF1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-20
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 18 RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREV 77
          R  +  VVRY ECQ+NHAA +GG AVDGCREFMA G +GT  AL CAACGCHR+FHRREV
Sbjct: 26 RKENNKVVRYRECQRNHAASIGGHAVDGCREFMASGAEGTAAALLCAACGCHRSFHRREV 85

Query: 78 DA 80
          +A
Sbjct: 86 EA 87

[Close]

BLAST of Lsi06G014680 vs. ExPASy TrEMBL
Match: A0A6J1E6Q9 (mini zinc finger protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111429921 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.4e-42
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTE 60
          MKKR+VVVKKSDGSGGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTE
Sbjct: 1  MKKRVVVVKKSDGSGGRGNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEEGTE 60

Query: 61 EALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          EAL+CAACGCHRNFHRREVDAEVVFEYSPPNS+
Sbjct: 61 EALSCAACGCHRNFHRREVDAEVVFEYSPPNSD 93

[Close]

BLAST of Lsi06G014680 vs. ExPASy TrEMBL
Match: A0A6J1J9R5 (mini zinc finger protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111484829 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTE 60
          MKKR+VVVKKSDGSGGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTE
Sbjct: 1  MKKRVVVVKKSDGSGGRGNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEEGTE 60

Query: 61 EALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          EAL+CAACGCHRNFHRR+VDAEVVFEYSPPNS+
Sbjct: 61 EALSCAACGCHRNFHRRDVDAEVVFEYSPPNSD 93

[Close]

BLAST of Lsi06G014680 vs. ExPASy TrEMBL
Match: A0A6J1C4B2 (mini zinc finger protein 3-like OS=Momordica charantia OX=3673 GN=LOC111007261 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGR-RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEE 60
          MKKRLVVVKKSDGSGGR RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEE
Sbjct: 1  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEE 60

Query: 61 ALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          AL CAAC CHRNFHRREVD+EVVFEYSPPNS+
Sbjct: 61 ALICAACSCHRNFHRREVDSEVVFEYSPPNSS 92

[Close]

BLAST of Lsi06G014680 vs. ExPASy TrEMBL
Match: A0A0A0LSA6 (ZF-HD dimerization-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G009710 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.2e-41
Identity = 87/95 (91.58%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGRR----SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDG 60
          MKKRLVVV+KSDGS GRR    S SGS VRYAECQKNHAAKLGGFAVDGCREFMARGEDG
Sbjct: 1  MKKRLVVVRKSDGSNGRRNHHWSSSGSEVRYAECQKNHAAKLGGFAVDGCREFMARGEDG 60

Query: 61 TEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          TEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
Sbjct: 61 TEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 95

[Close]

BLAST of Lsi06G014680 vs. ExPASy TrEMBL
Match: A0A5A7UWS7 (Mini zinc finger protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002440 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.1e-41
Identity = 87/96 (90.62%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGRR-----SGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGED 60
          MKKRLVVVKKSDGS GRR     + SGS VRYAECQKNHAAKLGGFAVDGCREFMARGED
Sbjct: 1  MKKRLVVVKKSDGSNGRRNHHWSASSGSEVRYAECQKNHAAKLGGFAVDGCREFMARGED 60

Query: 61 GTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          GTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
Sbjct: 61 GTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 96

[Close]

BLAST of Lsi06G014680 vs. NCBI nr
Match: XP_038880256.1 (mini zinc finger protein 3 [Benincasa hispida])

HSP 1 Score: 180.6 bits (457), Expect = 5.9e-42
Identity = 89/95 (93.68%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGR----RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDG 60
          MKKRLVVVKKSDGS GR    RS SGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDG
Sbjct: 1  MKKRLVVVKKSDGSSGRRNHNRSSSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDG 60

Query: 61 TEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          TEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN
Sbjct: 61 TEEALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 95

[Close]

BLAST of Lsi06G014680 vs. NCBI nr
Match: XP_022921765.1 (mini zinc finger protein 3-like [Cucurbita moschata] >KAG6589505.1 Mini zinc finger protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 87/93 (93.55%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTE 60
          MKKR+VVVKKSDGSGGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTE
Sbjct: 1  MKKRVVVVKKSDGSGGRGNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEEGTE 60

Query: 61 EALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          EAL+CAACGCHRNFHRREVDAEVVFEYSPPNS+
Sbjct: 61 EALSCAACGCHRNFHRREVDAEVVFEYSPPNSD 93

[Close]

BLAST of Lsi06G014680 vs. NCBI nr
Match: XP_022987207.1 (mini zinc finger protein 3-like [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41
Identity = 86/93 (92.47%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTE 60
          MKKR+VVVKKSDGSGGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTE
Sbjct: 1  MKKRVVVVKKSDGSGGRGNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEEGTE 60

Query: 61 EALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          EAL+CAACGCHRNFHRR+VDAEVVFEYSPPNS+
Sbjct: 61 EALSCAACGCHRNFHRRDVDAEVVFEYSPPNSD 93

[Close]

BLAST of Lsi06G014680 vs. NCBI nr
Match: XP_022135253.1 (mini zinc finger protein 3-like [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 5.0e-41
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGR-RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEE 60
          MKKRLVVVKKSDGSGGR RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEE
Sbjct: 1  MKKRLVVVKKSDGSGGRNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEE 60

Query: 61 ALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          AL CAAC CHRNFHRREVD+EVVFEYSPPNS+
Sbjct: 61 ALICAACSCHRNFHRREVDSEVVFEYSPPNSS 92

[Close]

BLAST of Lsi06G014680 vs. NCBI nr
Match: KAG7023191.1 (Mini zinc finger protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 5.0e-41
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGR--RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTE 60
          MKKR+VVVKKSDG GGR  RSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGE+GTE
Sbjct: 1  MKKRVVVVKKSDGPGGRGNRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEEGTE 60

Query: 61 EALNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          EAL+CAACGCHRNFHRREVDAEVVFEYSPPNS+
Sbjct: 61 EALSCAACGCHRNFHRREVDAEVVFEYSPPNSD 93

[Close]

BLAST of Lsi06G014680 vs. TAIR 10
Match: AT1G18835.1 (mini zinc finger )

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-29
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEA 60
          MKKR VV+K+   S    S S S VRY ECQKNHAA +GG+AVDGCREFMA G D   +A
Sbjct: 1  MKKRQVVIKQRKSSYTMTS-SSSNVRYVECQKNHAANIGGYAVDGCREFMASGGD---DA 60

Query: 61 LNCAACGCHRNFHRREVDAEVVFEYSPPNSN 92
          L CAACGCHRNFHRREVD EVV EYSPPN+N
Sbjct: 61 LTCAACGCHRNFHRREVDTEVVCEYSPPNAN 87

[Close]

BLAST of Lsi06G014680 vs. TAIR 10
Match: AT1G74660.1 (mini zinc finger 1 )

HSP 1 Score: 123.6 bits (309), Expect = 8.0e-29
Identity = 61/101 (60.40%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MKKRLVVVKK-----------SDGSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREF 60
           MKKR +V+K+           +  S    S   S VRY ECQKNHAA +GG+AVDGCREF
Sbjct: 2   MKKRQMVIKQRSRNSNTSSSWTTTSSSSSSSEISNVRYVECQKNHAANIGGYAVDGCREF 61

Query: 61  MARGEDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNS 91
           MA G +GT +AL CAACGCHRNFHR+EVD EVV EYSPPN+
Sbjct: 62  MAAGVEGTVDALRCAACGCHRNFHRKEVDTEVVCEYSPPNA 102

[Close]

BLAST of Lsi06G014680 vs. TAIR 10
Match: AT3G28917.1 (mini zinc finger 2 )

HSP 1 Score: 110.9 bits (276), Expect = 5.4e-25
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 1  MKKRLVVVKKSDGSGGRRSGSGS------VVRYAECQKNHAAKLGGFAVDGCREFMA-RG 60
          M+KR VV++++      RS S +       VRY ECQKNHAA +GG+AVDGCREFMA RG
Sbjct: 1  MRKRQVVLRRASPEEPSRSSSTASSLTVRTVRYGECQKNHAAAVGGYAVDGCREFMASRG 60

Query: 61 EDGTEEALNCAACGCHRNFHRREVDAEVVFEYSPPNS 91
          E+GT  AL CAACGCHR+FHRRE++ EVV + + P S
Sbjct: 61 EEGTVAALTCAACGCHRSFHRREIETEVVCDCNSPPS 97

[Close]

BLAST of Lsi06G014680 vs. TAIR 10
Match: AT4G24660.1 (homeobox protein 22 )

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-21
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 13  GSGGRRSGSGSVVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNF 72
           G  GR  G G+ +RY EC KNHA  +GG AVDGC EFM  GEDGT +AL CAACGCHRNF
Sbjct: 35  GGVGRSKGVGAKIRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNF 94

Query: 73  HRREVDA 80
           HR+E ++
Sbjct: 95  HRKETES 101

[Close]

BLAST of Lsi06G014680 vs. TAIR 10
Match: AT2G02540.1 (homeobox protein 21 )

HSP 1 Score: 90.9 bits (224), Expect = 5.7e-19
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 24  VVRYAECQKNHAAKLGGFAVDGCREFMARGEDGTEEALNCAACGCHRNFHRREVDAEVVF 83
           V++Y EC KNHAA +GG A+DGC EFM  GE+G+ EAL C+ C CHRNFHRRE + E   
Sbjct: 84  VIKYKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEALTCSVCNCHRNFHRRETEGEEKT 143

Query: 84  EYSP 88
            +SP
Sbjct: 144 FFSP 147

The following BLAST results are available for this feature:

BLAST of Lsi06G014680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2Q493	2.3e-28	70.33	Mini zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=MIF3 PE=1 SV=1	[more]
Q9CA51	1.1e-27	60.40	Mini zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIF1 PE=1 SV=1	[more]
Q9LJW5	7.5e-24	57.73	Mini zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIF2 PE=1 SV=1	[more]
B8BIU8	3.0e-20	70.97	Mini zinc finger protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=MIF1 PE=3 S...	[more]
Q2RB28	3.0e-20	70.97	Mini zinc finger protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MIF1 PE=3...	[more]

BLAST of Lsi06G014680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6Q9	6.4e-42	93.55	mini zinc finger protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111429921 PE...	[more]
A0A6J1J9R5	1.4e-41	92.47	mini zinc finger protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111484829 PE=4...	[more]
A0A6J1C4B2	2.4e-41	94.57	mini zinc finger protein 3-like OS=Momordica charantia OX=3673 GN=LOC111007261 P...	[more]
A0A0A0LSA6	3.2e-41	91.58	ZF-HD dimerization-type domain-containing protein OS=Cucumis sativus OX=3659 GN=...	[more]
A0A5A7UWS7	4.1e-41	90.63	Mini zinc finger protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Lsi06G014680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880256.1	5.9e-42	93.68	mini zinc finger protein 3 [Benincasa hispida]	[more]
XP_022921765.1	1.3e-41	93.55	mini zinc finger protein 3-like [Cucurbita moschata] >KAG6589505.1 Mini zinc fin...	[more]
XP_022987207.1	2.9e-41	92.47	mini zinc finger protein 3-like [Cucurbita maxima]	[more]
XP_022135253.1	5.0e-41	94.57	mini zinc finger protein 3-like [Momordica charantia]	[more]
KAG7023191.1	5.0e-41	92.47	Mini zinc finger protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lsi06G014680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18835.1	1.6e-29	70.33	mini zinc finger	[more]
AT1G74660.1	8.0e-29	60.40	mini zinc finger 1	[more]
AT3G28917.1	5.4e-25	57.73	mini zinc finger 2	[more]
AT4G24660.1	2.7e-21	64.18	homeobox protein 22	[more]
AT2G02540.1	5.7e-19	59.38	homeobox protein 21	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	TIGRFAM	TIGR01566	TIGR01566	coord: 26..77 e-value: 7.2E-27 score: 91.6
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PFAM	PF04770	ZF-HD_dimer	coord: 25..77 e-value: 1.2E-29 score: 102.4
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PROSITE	PS51523	ZF_HD_DIMER	coord: 27..76 score: 25.362278
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR31948	ZINC-FINGER HOMEODOMAIN PROTEIN 2	coord: 1..89
None	No IPR available	PANTHER	PTHR31948:SF107	MINI ZINC FINGER PROTEIN 3	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G014680.1	Lsi06G014680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding