Lsi06G014660 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G014660
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCLAVATA3/ESR-RELATED
Locationchr06: 25184346 .. 25184624 (+)
RNA-Seq ExpressionLsi06G014660
SyntenyLsi06G014660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCTTGTTTAACAGGAAAGGTTTGATGTTTGTGTTTATTGTAGCTGGTTTTTTGTTGTGTCTTCTTCAACCTCAAACAGCAACTGGGCTTAGCACAATTGATGTTGCTCTCAAATGGGTGGCTTACAAATCCCCAATTATCAACACCCACAACAGGGCTGATTCAGTGAAAAAATTGAACTTGGCTCCATCACCAGCAATGAATTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGACCCAATTCACAACAGATCTTAG

mRNA sequence

ATGGCTGGTTTTTTGTTGTGTCTTCTTCAACCTCAAACAGCAACTGGGCTTAGCACAATTGATGTTGCTCTCAAATGGGTGGCTTACAAATCCCCAATTATCAACACCCACAACAGGGCTGATTCAGTGAAAAAATTGAACTTGGCTCCATCACCAGCAATGAATTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGACCCAATTCACAACAGATCTTAG

Coding sequence (CDS)

ATGGCTGGTTTTTTGTTGTGTCTTCTTCAACCTCAAACAGCAACTGGGCTTAGCACAATTGATGTTGCTCTCAAATGGGTGGCTTACAAATCCCCAATTATCAACACCCACAACAGGGCTGATTCAGTGAAAAAATTGAACTTGGCTCCATCACCAGCAATGAATTTTGACCCAAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCTGACCCAATTCACAACAGATCTTAG

Protein sequence

MAGFLLCLLQPQTATGLSTIDVALKWVAYKSPIINTHNRADSVKKLNLAPSPAMNFDPNQSNKRGVKKGSDPIHNRS
Homology
BLAST of Lsi06G014660 vs. ExPASy TrEMBL
Match: A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.8e-19
Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1  MAGFLLCLL--QPQ-TATGLSTIDVALKWVAYKSP-IINTHNRADS--VKKLNL-APSPA 60
          +A FLLC+L  QPQ TA GLSTID ALKWVA+KS   INTH +ADS   K LNL APSPA
Sbjct: 16 VACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTH-KADSSDEKNLNLAAPSPA 75

Query: 61 MNFDPNQSNKRGVKKGSDPIHNRS 78
          MNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 76 MNFDPNQSNKRGVKKGSDPIHNRS 98

BLAST of Lsi06G014660 vs. ExPASy TrEMBL
Match: A0A445ABG3 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041332 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.4e-11
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 5  LLCLL-----QPQTATGLSTIDVALKWVAYKSPIINTHNRADSVKKLNLAPSPAMNFDPN 64
          L+C++     QP   +GL + D+ALKW   +S I+      D   KL++AP+P+M FDPN
Sbjct: 12 LVCVIGVLASQPCMVSGLRSQDLALKWDKGRSRILKAVTVEDLQSKLDVAPAPSMTFDPN 71

Query: 65 QSNKRGVKKGSDPIHNRS 78
          QSNKR VKKGSDPIHNRS
Sbjct: 72 QSNKRTVKKGSDPIHNRS 89

BLAST of Lsi06G014660 vs. ExPASy TrEMBL
Match: A0A7N2MQ95 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 6  LCLLQPQTATGLSTIDVALKWVAYKSPIINTHNRA-------DSVKKLNLAPSPAMNFDP 65
          L  LQP+  +GL +ID+ALKW   +SP +  H R        D   KLNLAP+P++  DP
Sbjct: 17 LLALQPEEVSGLRSIDLALKWDKVQSPFLK-HLRVLKVVAVDDFHTKLNLAPAPSVMVDP 76

Query: 66 NQSNKRGVKKGSDPIHNR 77
          NQSNKR V+KGSDPIHNR
Sbjct: 77 NQSNKRRVRKGSDPIHNR 93

BLAST of Lsi06G014660 vs. ExPASy TrEMBL
Match: A0A314YU30 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16404 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.4e-10
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 3  GFLLCLLQPQTATGLSTIDVALKWVAYKSPIINTHNRADSV------KKLNLAPSPAMNF 62
          GFL   LQP+  +GL ++D+AL+W       + + +  ++V       KL+LAP+P+M F
Sbjct: 16 GFL--ALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVEAVAVEDLQAKLSLAPAPSMTF 75

Query: 63 DPNQSNKRGVKKGSDPIHNRS 78
          DPNQSNKR V+KGSDPIHNRS
Sbjct: 76 DPNQSNKRKVRKGSDPIHNRS 94

BLAST of Lsi06G014660 vs. ExPASy TrEMBL
Match: A0A151RXA7 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_031215 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 0

Query: 10 QPQTATGLSTIDVALKWVAYKSPIINTHNRADSVKKLNLAPSPAMNFDPNQSNKRGVKKG 69
          QP+  +GL + D+AL+    KSP++ T    D   +L+LAP+P+M FDPNQSNKR V+KG
Sbjct: 21 QPRIVSGLRSKDLALRRDNRKSPLVATE---DLQSQLDLAPAPSMTFDPNQSNKRTVRKG 80

Query: 70 SDPIHNR 77
          SDPIHNR
Sbjct: 81 SDPIHNR 84

BLAST of Lsi06G014660 vs. NCBI nr
Match: KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 61/81 (75.31%), Postives = 68/81 (83.95%), Query Frame = 0

Query: 1  MAGFLLCLLQPQTATGLSTIDVALKWVAYKSPIINTHNRADSVKKLNL-----APSPAMN 60
          +AGF+  LLQPQTA+GL+TIDVALKWVA+KSP I+TH   DS KKLN+     APSPAMN
Sbjct: 16 LAGFVFSLLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSEKKLNMKNMNVAPSPAMN 75

Query: 61 FDPNQSNKRGVKKGSDPIHNR 77
          FDPNQSNKR VKKGSDPIHNR
Sbjct: 76 FDPNQSNKRRVKKGSDPIHNR 96

BLAST of Lsi06G014660 vs. NCBI nr
Match: KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 6.8e-23
Identity = 63/82 (76.83%), Postives = 71/82 (86.59%), Query Frame = 0

Query: 1  MAGFLLCLLQPQTATGLSTIDVALKWVAYKSPIINTHNRADSVKKL-----NLAPSPAMN 60
          +AG  LC +QPQTA+GL+TID+ALKWVA+KSPI NTHN  DSVKKL     +LAPSPAM+
Sbjct: 13 LAGVSLC-VQPQTASGLTTIDLALKWVAFKSPITNTHN-PDSVKKLKMKNMSLAPSPAMH 72

Query: 61 FDPNQSNKRGVKKGSDPIHNRS 78
          FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 73 FDPNQSNKRGVKKGSDPIHNRS 92

BLAST of Lsi06G014660 vs. NCBI nr
Match: KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 7.8e-19
Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 0

Query: 1  MAGFLLCLL--QPQ-TATGLSTIDVALKWVAYKSP-IINTHNRADS--VKKLNL-APSPA 60
          +A FLLC+L  QPQ TA GLSTID ALKWVA+KS   INTH +ADS   K LNL APSPA
Sbjct: 16 VACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTH-KADSSDEKNLNLAAPSPA 75

Query: 61 MNFDPNQSNKRGVKKGSDPIHNRS 78
          MNFDPNQSNKRGVKKGSDPIHNRS
Sbjct: 76 MNFDPNQSNKRGVKKGSDPIHNRS 98

BLAST of Lsi06G014660 vs. NCBI nr
Match: QHN98326.1 (uncharacterized protein DS421_13g388610 [Arachis hypogaea] >RYR23675.1 hypothetical protein Ahy_B03g068868 [Arachis hypogaea] >RYR45089.1 hypothetical protein Ahy_A08g041332 [Arachis hypogaea])

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 5  LLCLL-----QPQTATGLSTIDVALKWVAYKSPIINTHNRADSVKKLNLAPSPAMNFDPN 64
          L+C++     QP   +GL + D+ALKW   +S I+      D   KL++AP+P+M FDPN
Sbjct: 12 LVCVIGVLASQPCMVSGLRSQDLALKWDKGRSRILKAVTVEDLQSKLDVAPAPSMTFDPN 71

Query: 65 QSNKRGVKKGSDPIHNRS 78
          QSNKR VKKGSDPIHNRS
Sbjct: 72 QSNKRTVKKGSDPIHNRS 89

BLAST of Lsi06G014660 vs. NCBI nr
Match: TKY73379.1 (hypothetical protein E2542_SST02131 [Spatholobus suberectus])

HSP 1 Score: 73.9 bits (180), Expect = 6.6e-10
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 4   FLLCL----LQPQTATGLSTIDVALKWVAYKSP------IINTHNRADSVKKLNLAPSPA 63
           FL+C+     QP   +GL + D+AL+W + +SP      I+ T    D   +L+LAP+P+
Sbjct: 71  FLVCVGILASQPCMVSGLRSKDLALRWDSRQSPLVQMVRILKTVAMEDLQSQLDLAPAPS 130

Query: 64  MNFDPNQSNKRGVKKGSDPIHNRS 78
           M FDPNQSNKR V+KGSDPIHNRS
Sbjct: 131 MTFDPNQSNKRTVRKGSDPIHNRS 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPD53.8e-1977.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1[more]
A0A445ABG38.4e-1152.56Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g041332 PE=4 SV=1[more]
A0A7N2MQ951.9e-1053.85Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A314YU305.4e-1049.38Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_164... [more]
A0A151RXA71.6e-0955.22Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_031215 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6589506.11.0e-2375.31hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6587538.16.8e-2376.83hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN63668.17.8e-1977.38hypothetical protein Csa_014085 [Cucumis sativus][more]
QHN98326.11.7e-1052.56uncharacterized protein DS421_13g388610 [Arachis hypogaea] >RYR23675.1 hypotheti... [more]
TKY73379.16.6e-1050.00hypothetical protein E2542_SST02131 [Spatholobus suberectus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..77
NoneNo IPR availablePANTHERPTHR36726:SF5CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11coord: 4..77
IPR038821CLE-related protein 45-likePANTHERPTHR36726CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 4..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G014660.1Lsi06G014660.1mRNA