Lsi06G014320 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G014320
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	LYR motif-containing protein 4
Location	chr06: 24852613 .. 24852885 (-)
RNA-Seq Expression	Lsi06G014320
Synteny	Lsi06G014320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTCCAACGAGATCGGAGGCCCTTGCGCTTCTTCGCTCTCTGCTCCGTACAGCTAGTCACTTCTGCGATTACAACATCAAAGAGTACGCCAAACGACGTGCAGTCGACGGCTTCCGCCATAACCGGAACCTTTCCGTTCCTCCATCCATCTCCTCCGCCTACGCGGACGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAATCCGCCGTCTACTCCCTCTATGCGCCCAAGGTAAAGAGCATCATGGAGGCACATCGCACAAACTGA

mRNA sequence

ATGGCGGCTCCAACGAGATCGGAGGCCCTTGCGCTTCTTCGCTCTCTGCTCCGTACAGCTAGTCACTTCTGCGATTACAACATCAAAGAGTACGCCAAACGACGTGCAGTCGACGGCTTCCGCCATAACCGGAACCTTTCCGTTCCTCCATCCATCTCCTCCGCCTACGCGGACGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAATCCGCCGTCTACTCCCTCTATGCGCCCAAGGTAAAGAGCATCATGGAGGCACATCGCACAAACTGA

Coding sequence (CDS)

ATGGCGGCTCCAACGAGATCGGAGGCCCTTGCGCTTCTTCGCTCTCTGCTCCGTACAGCTAGTCACTTCTGCGATTACAACATCAAAGAGTACGCCAAACGACGTGCAGTCGACGGCTTCCGCCATAACCGGAACCTTTCCGTTCCTCCATCCATCTCCTCCGCCTACGCGGACGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAATCCGCCGTCTACTCCCTCTATGCGCCCAAGGTAAAGAGCATCATGGAGGCACATCGCACAAACTGA

Protein sequence

MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGKAQLEVAKRQSAVYSLYAPKVKSIMEAHRTN

Homology

[Close]

BLAST of Lsi06G014320 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-08
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MAA +R++ L L R+++R + HF  YN + YA RR  D FR N+N+  P  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQSAVYSLYA 78
            LE+ +RQ  +  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

[Close]

BLAST of Lsi06G014320 vs. ExPASy Swiss-Prot
Match: Q6Q560 (Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ISD11 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.2e-06
Identity = 25/74 (33.78%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 3  APTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGKAQ 62
          APTR + L+L +  ++ A+ F +YN +EY   +    FR N N   P  + + + + K  
Sbjct: 6  APTRRQVLSLYKEFIKNANQFNNYNFREYFLSKTRTTFRKNMNQQDPKVLMNLFKEAKND 65

Query: 63 LEVAKRQSAVYSLY 77
          L V KRQS +  +Y
Sbjct: 66 LGVLKRQSVISQMY 79

[Close]

BLAST of Lsi06G014320 vs. ExPASy Swiss-Prot
Match: B8JLQ0 (LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MA+ +R++ ++L R L++ +  F  YN + YA RR  DGFR N ++  P ++       +
Sbjct: 1  MASCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAR 60

Query: 61 AQLEVAKRQSAVYSLYA 78
            L V KRQ ++  LY+
Sbjct: 61 ENLAVIKRQVSIGHLYS 77

[Close]

BLAST of Lsi06G014320 vs. ExPASy Swiss-Prot
Match: O46098 (Protein bcn92 OS=Drosophila melanogaster OX=7227 GN=bcn92 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.9e-05
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 5  TRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGKAQLE 64
          TR +A+ L R+LLR +     YN + YA R+  D FR NR+      I    A+G+  LE
Sbjct: 3  TRRQAITLYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEIDRQMAEGQQNLE 62

Query: 65 VAKRQSAVYSLYAPKVKSIMEAHRT 90
          + +RQ  +  LY+   K ++E  +T
Sbjct: 63 LIRRQVIIGHLYSAD-KLVIENKKT 86

[Close]

BLAST of Lsi06G014320 vs. ExPASy Swiss-Prot
Match: Q54FN9 (LYR motif-containing protein 4 OS=Dictyostelium discoideum OX=44689 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-04
Identity = 27/72 (37.50%), Postives = 38/72 (52.78%), Query Frame = 0


Query: 6  RSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGKAQLEV 65
          +S  L L RSL+R +  F  YN +EY+ RR   GFR N+N            D    LE+
Sbjct: 4  KSVVLHLYRSLVRESKKFSSYNFREYSLRRVSVGFRENKNKD-QNETKELIQDALKNLEM 63

Query: 66 AKRQSAVYSLYA 78
           KRQ+ + S+Y+
Sbjct: 64 VKRQAFINSMYS 74

[Close]

BLAST of Lsi06G014320 vs. ExPASy TrEMBL
Match: A0A0A0LPH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.8e-36
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MA+PTRSEAL+LLRSL+RTA HF DYNI+EYAKRRAVDGFRHNRNLS PPSISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSAVYSLY PKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

[Close]

BLAST of Lsi06G014320 vs. ExPASy TrEMBL
Match: A0A5A7UTC8 (LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002810 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.7e-35
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MAAPTRSEAL+LLRSL+RT+  FCDYNI+EYAKRR VDGFRHNRNLS P SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSA+YSLYAPKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of Lsi06G014320 vs. ExPASy TrEMBL
Match: A0A1S3BV74 (LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.7e-35
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MAAPTRSEAL+LLRSL+RT+  FCDYNI+EYAKRR VDGFRHNRNLS P SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSA+YSLYAPKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of Lsi06G014320 vs. ExPASy TrEMBL
Match: A0A6J1IC29 (LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MA PTRSE+L+LLRSLLRTA HFCDYNI+EYAKRRAVDGFRHNRNLS P SI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQS VYSL++PKVKSIMEAH TN
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of Lsi06G014320 vs. ExPASy TrEMBL
Match: A0A6J1F322 (LYR motif-containing protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111439443 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MA PTRSE+L+LLRSLLRTA HFCDYNI+EYAKRRAVDGFRHNRNLS P SI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQS VYSL++PKVKSIMEAH TN
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of Lsi06G014320 vs. NCBI nr
Match: XP_038879775.1 (LYR motif-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 163.7 bits (413), Expect = 7.4e-37
Identity = 83/90 (92.22%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          M APTRSEAL+LLRS LRTA HFCDYNI+EYAKRRAVDGFRHNRNLS PPSISSAYADGK
Sbjct: 1  MVAPTRSEALSLLRSFLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSAVYSLYAPKVKSIME HRTN
Sbjct: 61 AQLEVAKRQSAVYSLYAPKVKSIMEPHRTN 90

[Close]

BLAST of Lsi06G014320 vs. NCBI nr
Match: XP_011660289.1 (LYR motif-containing protein 4 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-35
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MA+PTRSEAL+LLRSL+RTA HF DYNI+EYAKRRAVDGFRHNRNLS PPSISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSAVYSLY PKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

[Close]

BLAST of Lsi06G014320 vs. NCBI nr
Match: XP_008453246.1 (PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MAAPTRSEAL+LLRSL+RT+  FCDYNI+EYAKRR VDGFRHNRNLS P SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQSA+YSLYAPKVKSIMEAHR N
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of Lsi06G014320 vs. NCBI nr
Match: XP_022932898.1 (LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-containing protein 4 [Cucurbita maxima] >XP_023531294.1 LYR motif-containing protein 4 [Cucurbita pepo subsp. pepo] >KAG7021536.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.1 bits (383), Expect = 2.2e-33
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MA PTRSE+L+LLRSLLRTA HFCDYNI+EYAKRRAVDGFRHNRNLS P SI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVAKRQS VYSL++PKVKSIMEAH TN
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of Lsi06G014320 vs. NCBI nr
Match: XP_022134602.1 (LYR motif-containing protein 4-like [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 4.2e-32
Identity = 73/90 (81.11%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 1  MAAPTRSEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGK 60
          MA PTR+EAL+LLRSLLRTA HFCDYN++EYAKRRAVDGFRHNRNLS P SISSAYADG+
Sbjct: 1  MATPTRTEALSLLRSLLRTARHFCDYNVREYAKRRAVDGFRHNRNLSDPSSISSAYADGR 60

Query: 61 AQLEVAKRQSAVYSLYAPKVKSIMEAHRTN 91
          AQLEVA+RQS VYS +APKVKSIM+ H  N
Sbjct: 61 AQLEVARRQSTVYSFFAPKVKSIMDPHPAN 90

[Close]

BLAST of Lsi06G014320 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 87.4 bits (215), Expect = 6.3e-18
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 7  SEALALLRSLLRTASHFCDYNIKEYAKRRAVDGFRHNRNLSVPPSISSAYADGKAQLEVA 66
          SE L+L R+LLR    F DYNI+EY+KRR +DGFR N+NL+ P  ++ AYA+ K QL VA
Sbjct: 5  SEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLFVA 64

Query: 67 KRQSAVYSLYAPKVKSIME 86
          +R   VY  Y PK K+IME
Sbjct: 65 ERVLKVYLAYPPKTKNIME 83

The following BLAST results are available for this feature:

BLAST of Lsi06G014320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K215	3.4e-08	38.96	LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1	[more]
Q6Q560	9.2e-06	33.78	Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292...	[more]
B8JLQ0	1.2e-05	33.77	LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1	[more]
O46098	5.9e-05	35.29	Protein bcn92 OS=Drosophila melanogaster OX=7227 GN=bcn92 PE=1 SV=1	[more]
Q54FN9	1.7e-04	37.50	LYR motif-containing protein 4 OS=Dictyostelium discoideum OX=44689 GN=lyrm4 PE=...	[more]

BLAST of Lsi06G014320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPH2	8.8e-36	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1	[more]
A0A5A7UTC8	5.7e-35	87.78	LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BV74	5.7e-35	87.78	LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1	[more]
A0A6J1IC29	1.1e-33	85.56	LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 ...	[more]
A0A6J1F322	1.1e-33	85.56	LYR motif-containing protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111439443 PE=...	[more]

BLAST of Lsi06G014320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879775.1	7.4e-37	92.22	LYR motif-containing protein 4-like [Benincasa hispida]	[more]
XP_011660289.1	1.8e-35	90.00	LYR motif-containing protein 4 [Cucumis sativus]	[more]
XP_008453246.1	1.2e-34	87.78	PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif...	[more]
XP_022932898.1	2.2e-33	85.56	LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-co...	[more]
XP_022134602.1	4.2e-32	81.11	LYR motif-containing protein 4-like [Momordica charantia]	[more]

BLAST of Lsi06G014320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61220.1	6.3e-18	55.70	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 8..64 e-value: 1.0E-14 score: 54.3
None	No IPR available	PANTHER	PTHR47158	OS08G0239000 PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR47158:SF1	OS08G0239000 PROTEIN	coord: 1..88
None	No IPR available	CDD	cd20264	Complex1_LYR_LYRM4	coord: 19..76 e-value: 2.84421E-21 score: 77.1745

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G014320.1	Lsi06G014320.1	mRNA