Lsi06G014040 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G014040
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein
Locationchr06: 24582958 .. 24584069 (+)
RNA-Seq ExpressionLsi06G014040
SyntenyLsi06G014040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTTTTACTAAAATGTAGGAAGTAACTAATTTTGAATCTAATATCTATTTTTAAAATTAAAACTGAAATCCGAGTTTGTGGGATTACATTTCCACATATATAGTAATTTTTCTAACAAAGAAAAACCAAAGCTTAGTGGTCTTTGAATATGGAGAAGGTGGAAATGAGCAAGAGGAGAATGATTATGAAGTGGGGAAGGGATCTCCCACCTTTTATTGGTGAAACAATCTTCTCTAAACTTGTTGTCTCCAATCTCCTTGTTTGTAAAACTTGGAATGATCTAGTTTTAGACTATGCTGTCTCTACTAAATTTCGATTTCTTACAAATGTTTTTTTTATCTTCACCACTGATGAATTCCGTAATCAATTCCGCGATCTGCATATGAATGAGCCACACAATTTCAAAATGCATTATATCAATCTTAATGCTAAAAAAGATTTGGAATTGGAATTTACTAAATCAAGCTCATTGCAATTTGATGGGGATTGGTCCTACCTCATAATGAGGAATCAATGTAATGGTTTGTTGCTTATTTCCAAAAATACTCATTATTGTTCATGTGATGGCATATTCAATCCCATGACTAATGAGTTCATCCAGATTCCTGAAATTCCACGCTGATATTCATGTCTTCGGATTTGGTTTCAGCCCTACTACAAAACAATACAAATTATTCAGAGTTGTTAACTCAATTAGTTACTCAAAAAGTTGTAGGACTATTGTCCCTAACAACCAAGAATCTATGTTTATAATGGACGTTTTGACTTTTGGTAGAAGACTCTAACCAATGGAGGCATCTTCACTCTTATGAAAAAGTTTACAATGCTAATGGTGCTTACTTGAATGGAGTCATCTATTGGTTGGCAAAAAAAAGAGAAGATAAAAAGAAAGAGTATGTTATATATGCTCTTGATGTTGAAACTGAACAAATTGAATTGAGTATTGTTCTCTTGCAAGTTGGCTCTAACTGTACAATATGTCAACTTGATGGTACCATTTATGCAATTTTTCACATCGACTGGACAACAATTAACAAGACCATTCAAATTTGGAGAATGGAATCATGGATTAGAGAATTTGTTATTGGTGATATACCAAATTATTGA

mRNA sequence

ATGATGGTGGAAATGAGCAAGAGGAGAATGATTATGAAGTGGGGAAGGGATCTCCCACCTTTTATTGGTGAAACAATCTTCTCTAAACTTGTTGTCTCCAATCTCCTTGTTTGTAAAACTTGGAATGATCTAGTTTTAGACTATGCTGTCTCTACTAAATTTCGATTTCTTACAAATGTTTTTTTTATCTTCACCACTGATGAATTCCGTAATCAATTCCGCGATCTGCATATGAATGAGCCACACAATTTCAAAATGCATTATATCAATCTTAATGCTAAAAAAGATTTGGAATTGGAATTTACTAAATCAAGCTCATTGCAATTTGATGGGGATTGGTCCTACCTCATAATGAGGAATCAATGTAATGGTTTGTTGCTTATTTCCAAAAATACTCATTATTGTTCATGTGATGGCATATTCAATCCCATGACTAATGAATTCCTGAAATTCCACGCTGATATTCATGTCTTCGGATTTGGTTTCAGCCCTACTACAAAACAATACAAATTATTCAGAGTTGTTAACTCAATTAGTTACTCAAAAAGTTGTAGGACTATTGTCCCTAACAACCAAGAATCTATGTTTATAATGGACGTTTTGACTTTTGAAGACTCTAACCAATGGAGGCATCTTCACTCTTATGAAAAAGTTTACAATGCTAATGGTGCTTACTTGAATGGAGTCATCTATTGGTTGGCAAAAAAAAGAGAAGATAAAAAGAAAGAGTATGTTATATATGCTCTTGATGTTGAAACTGAACAAATTGAATTGAGTATTGTTCTCTTGCAAGTTGGCTCTAACTGTACAATATGTCAACTTGATGGTACCATTTATGCAATTTTTCACATCGACTGGACAACAATTAACAAGACCATTCAAATTTGGAGAATGGAATCATGGATTAGAGAATTTGTTATTGGTGATATACCAAATTATTGA

Coding sequence (CDS)

ATGATGGTGGAAATGAGCAAGAGGAGAATGATTATGAAGTGGGGAAGGGATCTCCCACCTTTTATTGGTGAAACAATCTTCTCTAAACTTGTTGTCTCCAATCTCCTTGTTTGTAAAACTTGGAATGATCTAGTTTTAGACTATGCTGTCTCTACTAAATTTCGATTTCTTACAAATGTTTTTTTTATCTTCACCACTGATGAATTCCGTAATCAATTCCGCGATCTGCATATGAATGAGCCACACAATTTCAAAATGCATTATATCAATCTTAATGCTAAAAAAGATTTGGAATTGGAATTTACTAAATCAAGCTCATTGCAATTTGATGGGGATTGGTCCTACCTCATAATGAGGAATCAATGTAATGGTTTGTTGCTTATTTCCAAAAATACTCATTATTGTTCATGTGATGGCATATTCAATCCCATGACTAATGAATTCCTGAAATTCCACGCTGATATTCATGTCTTCGGATTTGGTTTCAGCCCTACTACAAAACAATACAAATTATTCAGAGTTGTTAACTCAATTAGTTACTCAAAAAGTTGTAGGACTATTGTCCCTAACAACCAAGAATCTATGTTTATAATGGACGTTTTGACTTTTGAAGACTCTAACCAATGGAGGCATCTTCACTCTTATGAAAAAGTTTACAATGCTAATGGTGCTTACTTGAATGGAGTCATCTATTGGTTGGCAAAAAAAAGAGAAGATAAAAAGAAAGAGTATGTTATATATGCTCTTGATGTTGAAACTGAACAAATTGAATTGAGTATTGTTCTCTTGCAAGTTGGCTCTAACTGTACAATATGTCAACTTGATGGTACCATTTATGCAATTTTTCACATCGACTGGACAACAATTAACAAGACCATTCAAATTTGGAGAATGGAATCATGGATTAGAGAATTTGTTATTGGTGATATACCAAATTATTGA

Protein sequence

MMVEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNLLVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHADIHVFGFGFSPTTKQYKLFRVVNSISYSKSCRTIVPNNQESMFIMDVLTFEDSNQWRHLHSYEKVYNANGAYLNGVIYWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCTICQLDGTIYAIFHIDWTTINKTIQIWRMESWIREFVIGDIPNY
Homology
BLAST of Lsi06G014040 vs. ExPASy Swiss-Prot
Match: Q9SFC7 (F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-10
Identity = 78/321 (24.30%), Postives = 145/321 (45.17%), Query Frame = 0

Query: 18  LPPFIGETIFSKLVVSN----LLVCKTWNDLVLDYA-VSTKFRFLTNVFFIFTTDEFRNQ 77
           LP  I   IFS+L +S+    + VC++W  ++  +  +S+     T    +         
Sbjct: 28  LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLL--------- 87

Query: 78  FRDLHMNEPHNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCNGLLLISKNT 137
              LH + P    +H+++L+ ++  +   TK  +L+F        +   CNGLL +S + 
Sbjct: 88  ---LHCDSPIRNGLHFLDLSEEE--KRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSL 147

Query: 138 HYCSCDGIFNPMTNEFL-------KFHADIHVFGFGFSPTTKQYKLFRVV--------NS 197
           +  S   ++NP T   L       K+H    VFGFGF   TK+YK+ ++V        N+
Sbjct: 148 YNDSL-YLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNN 207

Query: 198 ISYSKSCRTIVPNNQESMFIMDVLTFEDSNQWRHLHS--YEKVYNANGAYLNGVIYWLAK 257
             Y    R     ++  +  +   T + S  WR L    Y+ V  ++ A +NG ++++ +
Sbjct: 208 GIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTR 267

Query: 258 -KREDKKKEYVIYAL-DVETEQIELSIVLLQVGSNCTICQLDGTIYAIFHIDWTTINKTI 309
            +R    +++V + L D E ++I          +N  +  L G + A+ + ++  ++   
Sbjct: 268 PRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLD--- 327

BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match: A0A0A0LWG1 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 175/340 (51.47%), Postives = 223/340 (65.59%), Query Frame = 0

Query: 3   VEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLT 62
           +E+S+RRM +  G+ LPP I +TIFSKLV+S+L    LV  TWNDLVLDYA ST+ +FL 
Sbjct: 11  MEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQFLK 70

Query: 63  NVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKK-------DLELEFTKSSSLQFDG 122
           N F + T+D   N        +  N KMH INL+ ++       DLE EF KS+SLQFDG
Sbjct: 71  NAFLLSTSDRGLNY-------KLCNPKMHCINLDTRQLSNDFDFDLESEFIKSASLQFDG 130

Query: 123 DWSY-LIMRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHA-----DIHVFGFGFSPT 182
           DW+Y +IM   CNGL+LISK + Y  C GIFNPMTNEFL+        D +++GFGFSP 
Sbjct: 131 DWTYTIIMAGSCNGLMLISKCSDYTWCQGIFNPMTNEFLQVSEHGTFDDFYLYGFGFSPI 190

Query: 183 TKQYKLFRVVNSISYSKSCRTIVPNNQESMFIMDVLTFEDS---------NQWRHLHSYE 242
           TKQYKLFRV +       CR    +  ++ + M+VLTF  S         NQWR LH+  
Sbjct: 191 TKQYKLFRVFDK---GFRCRR-TSSTVDTHYTMEVLTFGRSGTNHSIPIHNQWRRLHTLP 250

Query: 243 KVYNANGAYLNGVIYWLAK-KREDKKKEYVIYALDVETEQIELSIVLLQVGSN--CTICQ 302
               A+G YLNG+IYWL K K +DK+K+YVIYALDVETE IE+++V LQV SN    I Q
Sbjct: 251 FEIVADGVYLNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVV-LQVPSNGYGKIHQ 310

Query: 303 LDGTIYAIFHIDWTTINKTIQIWRM---ESWIREFVIGDI 311
            +GTIYA FHI+W   ++TIQ+WRM   +SW+R+FVI DI
Sbjct: 311 FNGTIYATFHINWEKDSRTIQVWRMQEKDSWVRKFVICDI 338

BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match: A0A0A0LPC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 167/338 (49.41%), Postives = 218/338 (64.50%), Query Frame = 0

Query: 3   VEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLT 62
           +EM +RRM + WG+ LPP I +TIFSKLV+SNL     VCKTWN LVL YA ST+ +FLT
Sbjct: 27  MEMGERRMSIDWGKGLPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLT 86

Query: 63  NVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKK-------DLELEFTKSSSLQFDG 122
           N F + T+D   N        E  N KMH INL+ ++       DLE EF KS SLQF G
Sbjct: 87  NAFLLSTSDRMLNY-------ELCNPKMHCINLDNRQSSNDVDFDLEWEFIKSGSLQFYG 146

Query: 123 DWSYLI-MRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHA-----DIHVFGFGFSPT 182
           DW+++I + + CNGL+ ISK + Y  C GIFNPMTNEF +        D + +GFG S  
Sbjct: 147 DWTFMILLAHPCNGLMFISKCSDYTWCQGIFNPMTNEFFQVSEQDTFDDFYHYGFGLSAI 206

Query: 183 TKQYKLFRVVNSISYSKSCRTIVP-NNQESMFIMDVLTFEDS--------NQWRHLHSYE 242
           +KQYKLFRV  +I YS+  R ++     ++ + M+VLTF  S        NQWRHLH+  
Sbjct: 207 SKQYKLFRVSEAIPYSERFRLMITFGRDDTHYTMEVLTFGRSGTNHIPIHNQWRHLHNL- 266

Query: 243 KVYNANGAYLNGVIYWLAKKREDK-KKEYVIYALDVETEQIELSIVLLQVGSNCTICQLD 302
                +G YLNG+IYWL K++  K KKEYVIYALDVETEQIE+S++L    S+  +   +
Sbjct: 267 SCDLIHGVYLNGIIYWLGKEKGKKEKKEYVIYALDVETEQIEMSVILQVQASDGKMHPFN 326

Query: 303 GTIYAIFHIDWTTINKTIQIWRME---SWIREFVIGDI 311
           GTIYA+F+I+W   ++TIQ+W M+   SWIR+FVI DI
Sbjct: 327 GTIYALFYINWEKDSRTIQVWSMQEKCSWIRQFVIRDI 356

BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match: A0A0A0LUP7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G014430 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 161/337 (47.77%), Postives = 211/337 (62.61%), Query Frame = 0

Query: 3   VEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLT 62
           +EM +RRM + WG+ LPP I + IFSKLV+SNL     VCKTWN LVL YA ST+ +FLT
Sbjct: 27  MEMGERRMSIDWGKGLPPLIAKIIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLT 86

Query: 63  NVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKK-----DLELEFTKSSSLQFDGDW 122
           N F + T+D+  N        E  N KMH INL+  +     DLE+EF KS S QF GDW
Sbjct: 87  NAFLLSTSDQMLNY-------ELCNPKMHSINLDNTQCSDDVDLEMEFIKSGSFQFYGDW 146

Query: 123 SYLI-MRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHA-----DIHVFGFGFSPTTK 182
           +++I M + CNGL+ ISK + Y  C GIFNPMTNEF +        D + +GFG SP TK
Sbjct: 147 TFMILMAHPCNGLVFISKCSDYTWCQGIFNPMTNEFFQVSEQDTFDDFYNYGFGLSPVTK 206

Query: 183 QYKLFRVVNSISYSKSCRTI-VPNNQESMFIMDVLTFEDS--------NQWRHLH--SYE 242
           QYKLFR   +I YSK  R +   +  ++ ++M+VLTF  S        NQWRHLH  SY+
Sbjct: 207 QYKLFRTSKAIPYSKRFRLVSTCSTDDTHYMMEVLTFGRSGTNHIPIHNQWRHLHNLSYD 266

Query: 243 KVYNANGAYLNGVIYWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCTICQLDG 302
            V    G YLNG+I+   KK   +K++Y IYALD ETEQIE+S++L     +  +   +G
Sbjct: 267 IVVGDGGVYLNGIIFGWEKKNVKRKRKYDIYALDDETEQIEMSVILQVHARDGKMHLFNG 326

Query: 303 TIYAIFHIDWTTINKTIQIWRME---SWIREFVIGDI 311
           TIYA F+ +W   + T+Q+W M+   SWIR+FVI DI
Sbjct: 327 TIYATFYTNWEKDDLTVQVWSMQEKHSWIRKFVISDI 356

BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match: A0A5D3DMB7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 5.7e-58
Identity = 151/332 (45.48%), Postives = 194/332 (58.43%), Query Frame = 0

Query: 12  MKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTD 71
           MK GR LPP I   I  +LV+SNL    +V KTWN  +LDYA   +F       F+ +T 
Sbjct: 15  MKLGRGLPPHIVREILRRLVISNLPNLRVVSKTWNLFILDYA--HEFSSTNANAFLLSTS 74

Query: 72  EFRNQFRDLHMNEPHNFKMHY-----INLNAKKDLELEFTKSSSLQFDGDWSYL-IMRNQ 131
           +     +DL+   P  + +H+     ++L+   DLELE+TK  SL FDGDWS++ +M N 
Sbjct: 75  DTGPGNKDLN---PKMYCIHFDTTKHLDLDLDFDLELEWTKPPSLSFDGDWSFIPMMDNS 134

Query: 132 CNGLLLISKNTHYCSCDGIFNPMTNEFL-----KFHADIHVFGFGFSPTTKQYKLFRVVN 191
           CNGL+ I K   +   DGIFNPMTNEFL     +   D + +G GFSPTTKQYK+FRV  
Sbjct: 135 CNGLVFIRKCAFFSRSDGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV-- 194

Query: 192 SISYSKSCRTIVPNNQESMFIMDVLTFEDS------NQWRHLHSYEKVYNANGAYLNGVI 251
                       PNN  S  IM +LTF  S      NQWR LHS   +   +G YLNG I
Sbjct: 195 -----------NPNNNSS--IMYILTFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFI 254

Query: 252 YWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCT-------ICQLDGTIYAIFH 311
           YW+ +K + K+ EY IYAL+VETEQIELS V L +G   T       + Q +G++YA F+
Sbjct: 255 YWMGRK-QYKENEYTIYALNVETEQIELSAV-LHLGPFSTSSIPGVSLKQFNGSVYATFY 314

Query: 312 IDWTTINKTIQIWRMES---WIREFVIGDIPN 313
           ID  T N  IQ+WRM+    WI+EFVI DIPN
Sbjct: 315 IDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPN 324

BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match: A0A5A7TCF3 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 151/332 (45.48%), Postives = 194/332 (58.43%), Query Frame = 0

Query: 12  MKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTD 71
           MK GR LPP I   I  +LV+SNL    +V KTWN  +LDYA   +F       F+ +T 
Sbjct: 12  MKLGRGLPPHIVSEILRRLVISNLPNLRVVSKTWNLFILDYA--HEFSSTNANAFLLSTS 71

Query: 72  EFRNQFRDLHMNEPHNFKMHY-----INLNAKKDLELEFTKSSSLQFDGDWSYL-IMRNQ 131
           +     +DL+   P  + +H+     ++L+   DLELE+TK  SL FDGDWS++ +M N 
Sbjct: 72  DTGPGNKDLN---PKMYCIHFDTTKHLDLDLDFDLELEWTKPPSLSFDGDWSFIPMMDNS 131

Query: 132 CNGLLLISKNTHYCSCDGIFNPMTNEFL-----KFHADIHVFGFGFSPTTKQYKLFRVVN 191
           CNGL+ I K   +   DGIFNPMTNEFL     +   D + +G GFSPTTKQYK+FRV  
Sbjct: 132 CNGLVFIRKCAFF--SDGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV-- 191

Query: 192 SISYSKSCRTIVPNNQESMFIMDVLTFEDS------NQWRHLHSYEKVYNANGAYLNGVI 251
                       PNN  S  IM +LTF  S      NQWR LHS   +   +G YLNG I
Sbjct: 192 -----------NPNNNSS--IMYILTFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFI 251

Query: 252 YWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCT-------ICQLDGTIYAIFH 311
           YW+ +K + K+ EY IYAL+VETEQIELS V L +G   T       + Q +G++YA F+
Sbjct: 252 YWMGRK-QYKENEYTIYALNVETEQIELSAV-LHLGPFSTSSIPGVSLKQFNGSVYATFY 311

Query: 312 IDWTTINKTIQIWRMES---WIREFVIGDIPN 313
           ID  T N  IQ+WRM+    WI+EFVI DIPN
Sbjct: 312 IDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPN 319

BLAST of Lsi06G014040 vs. NCBI nr
Match: XP_038875053.1 (F-box protein At3g07870-like [Benincasa hispida])

HSP 1 Score: 299.7 bits (766), Expect = 3.0e-77
Identity = 161/251 (64.14%), Postives = 185/251 (73.71%), Query Frame = 0

Query: 82  HNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCNGLLLISKNTHYCSCDGIF 141
           H+ ++   NL    D ELEFTKS SLQFDG WSY+I+RNQCNGL+ ISKNT YC CDGIF
Sbjct: 69  HDKRLCKKNLQTDFDFELEFTKSGSLQFDGGWSYVILRNQCNGLVFISKNTFYCKCDGIF 128

Query: 142 NPMTNEFL---KFHADIHVFGFGFSPTTKQYKLFRVVNSISYSKSCRTIVPNNQESMFIM 201
           NPMTNEF+   +F+ DI+ FGFGFSPTTKQYKLFRV +SI+YS+S RTIVPN QES  IM
Sbjct: 129 NPMTNEFIQVPEFYDDIYDFGFGFSPTTKQYKLFRVADSIAYSESSRTIVPNTQESKSIM 188

Query: 202 DVLTFEDSN------QWRHLH--SYEKVYNANGAYLNGVIYWLAK-KREDKKKEYVIYAL 261
           DVLTF  S       QWRHLH  S+E     NGAYLNGVIYWL + K +D K  YVIYAL
Sbjct: 189 DVLTFGRSGTNPNPYQWRHLHTLSFETEKVCNGAYLNGVIYWLVREKGKDNKLMYVIYAL 248

Query: 262 DVETEQIELSIVL-----LQVGSNCTICQLDGTIYAIFHIDWTTINKTIQIWRM---ESW 313
           DVETEQIELS VL     ++VG    + Q +GTIYA FHI+W T++KT Q+WRM   ESW
Sbjct: 249 DVETEQIELSAVLQEVIDVEVGRG-RLYQFNGTIYATFHINWATVSKTFQVWRMRENESW 308

BLAST of Lsi06G014040 vs. NCBI nr
Match: XP_038890298.1 (F-box protein At3g07870-like [Benincasa hispida])

HSP 1 Score: 278.1 bits (710), Expect = 9.3e-71
Identity = 169/330 (51.21%), Postives = 210/330 (63.64%), Query Frame = 0

Query: 12  MKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTD 71
           MK GR LP  I   IFSKLV+S+L    L+ KTWND+VLDYA S+   FLTN FF+ T D
Sbjct: 4   MKLGRGLPRRIVREIFSKLVISDLPNLRLISKTWNDMVLDYANSSHHEFLTNAFFLSTCD 63

Query: 72  EFRNQFRDLHMNEPHNFKMHYINLNAKK------DLELEFTKSSSLQFDGDWSYLIMRNQ 131
                    +  +P N KMH I  +  K      DLE E+TKSSSL FDG+W+++ + N 
Sbjct: 64  ---------NRLDPRNLKMHCIRFDTTKHLDVDFDLESEWTKSSSLCFDGEWTFMAIMNY 123

Query: 132 CNGLLLISKNTHYCSCDGIFNPMTNEFL-----KFHADIHVFGFGFSPTTKQYKLFRVVN 191
           C+GLLLI K  +Y  CDGIFNPMTNEFL     +   DI+ FGFGF+ TTKQYKLFRV +
Sbjct: 124 CSGLLLICKCANYTRCDGIFNPMTNEFLQVPRGQLDNDIYYFGFGFTTTTKQYKLFRVCD 183

Query: 192 SISYSKSCRTIVPNNQESMFIMDVLTFEDS------NQWRHLHSYEKVYNANGAYLNGVI 251
             S+S++C        ES  IMDVLTF  S      NQWR+LH      ++NGAYLNG I
Sbjct: 184 --SFSRNCEF------ESGSIMDVLTFSRSGTNANHNQWRYLHYLPLDIHSNGAYLNGFI 243

Query: 252 YWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCT-----ICQLDGTIYAIFHID 311
           YW+ K+ E+K+ EY IY LDVETE+IELSIVL      CT     + Q + ++YAIF I+
Sbjct: 244 YWIGKE-EEKENEYAIYVLDVETEKIELSIVLEICPPLCTSKVGGMQQFNDSVYAIFLIN 303

Query: 312 WTTINKTIQIWRMES---WIREFVIGDIPN 313
             T N +IQ+WRM+    WIREFV+ DIPN
Sbjct: 304 QPTGN-SIQVWRMQEKDLWIREFVVDDIPN 314

BLAST of Lsi06G014040 vs. NCBI nr
Match: XP_038879760.1 (uncharacterized protein LOC120071509 [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 2.4e-66
Identity = 158/329 (48.02%), Postives = 206/329 (62.61%), Query Frame = 0

Query: 11  IMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTT 70
           I+ WGR+L   IGE+IF +LVVSNL    +VCKTWN L+LDY+ S+K   LTN F +FT 
Sbjct: 3   IVNWGRELQEDIGESIFGRLVVSNLATCRVVCKTWNSLILDYSSSSK--LLTNDFILFTR 62

Query: 71  DEFRNQF---RDLHMNEPHNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCN 130
           D   N       L+  + H F++   +L+   D+E E  K +SL+FDGDWS+++    CN
Sbjct: 63  D--GNPICGSSSLYNPKMHCFRLD--DLDVDSDMEFEVNKFASLRFDGDWSFILPIRSCN 122

Query: 131 GLLLISKNTHYCSCDGIFNPMTNEFLK-----FHADIHVFGFGFSPTTKQYKLFRVVNSI 190
           GLLLISK+T YCSC GIFNPMTNEF +     F A+ +V+GFGF PTTK YKLFR+    
Sbjct: 123 GLLLISKSTFYCSCMGIFNPMTNEFFRVPRDNFDANKYVYGFGFIPTTKHYKLFRITIED 182

Query: 191 SYSKSCRTIVPNNQESMFIMDVLTF----------EDSNQWRHLHSYEKVYNANGAYLNG 250
             S S R            M+VLTF          +  NQWRHL+S        GAY NG
Sbjct: 183 EPSYSSR------------MEVLTFGRGGINPNPKQSQNQWRHLYSIPSDICCKGAYFNG 242

Query: 251 VIYWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVG-----SNCTICQLDGTIYAIFH 310
           +IYWL +++ D++ EYVIY LDVE+E+I+LS V L+VG     +   I Q +G++YAIFH
Sbjct: 243 IIYWLGREK-DEQNEYVIYTLDVESEKIKLSAV-LKVGPFSHYNKVYIQQFNGSVYAIFH 302

BLAST of Lsi06G014040 vs. NCBI nr
Match: KAE8653057.1 (hypothetical protein Csa_020016 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 7.9e-62
Identity = 150/293 (51.19%), Postives = 190/293 (64.85%), Query Frame = 0

Query: 3   VEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLT 62
           +E+S+RRM +  G+ LPP I +TIFSKLV+S+L    LV  TWNDLVLDYA ST+ +FL 
Sbjct: 11  MEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQFLK 70

Query: 63  NVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKK-------DLELEFTKSSSLQFDG 122
           N F + T+D   N        +  N KMH INL+ ++       DLE EF KS+SLQFDG
Sbjct: 71  NAFLLSTSDRGLNY-------KLCNPKMHCINLDTRQLSNDFDFDLESEFIKSASLQFDG 130

Query: 123 DWSY-LIMRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHA-----DIHVFGFGFSPT 182
           DW+Y +IM   CNGL+LISK + Y  C GIFNPMTNEFL+        D +++GFGFSP 
Sbjct: 131 DWTYTIIMAGSCNGLMLISKCSDYTWCQGIFNPMTNEFLQVSEHGTFDDFYLYGFGFSPI 190

Query: 183 TKQYKLFRVVNSISYSKSCRTIVPNNQESMFIMDVLTFEDS---------NQWRHLHSYE 242
           TKQYKLFRV +       CR    +  ++ + M+VLTF  S         NQWR LH+  
Sbjct: 191 TKQYKLFRVFDK---GFRCRR-TSSTVDTHYTMEVLTFGRSGTNHSIPIHNQWRRLHTLP 250

Query: 243 KVYNANGAYLNGVIYWLAK-KREDKKKEYVIYALDVETEQIELSIVLLQVGSN 269
               A+G YLNG+IYWL K K +DK+K+YVIYALDVETE IE+++V LQV SN
Sbjct: 251 FEIVADGVYLNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVV-LQVPSN 291

BLAST of Lsi06G014040 vs. NCBI nr
Match: TYK24751.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 1.2e-57
Identity = 151/332 (45.48%), Postives = 194/332 (58.43%), Query Frame = 0

Query: 12  MKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTD 71
           MK GR LPP I   I  +LV+SNL    +V KTWN  +LDYA   +F       F+ +T 
Sbjct: 15  MKLGRGLPPHIVREILRRLVISNLPNLRVVSKTWNLFILDYA--HEFSSTNANAFLLSTS 74

Query: 72  EFRNQFRDLHMNEPHNFKMHY-----INLNAKKDLELEFTKSSSLQFDGDWSYL-IMRNQ 131
           +     +DL+   P  + +H+     ++L+   DLELE+TK  SL FDGDWS++ +M N 
Sbjct: 75  DTGPGNKDLN---PKMYCIHFDTTKHLDLDLDFDLELEWTKPPSLSFDGDWSFIPMMDNS 134

Query: 132 CNGLLLISKNTHYCSCDGIFNPMTNEFL-----KFHADIHVFGFGFSPTTKQYKLFRVVN 191
           CNGL+ I K   +   DGIFNPMTNEFL     +   D + +G GFSPTTKQYK+FRV  
Sbjct: 135 CNGLVFIRKCAFFSRSDGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV-- 194

Query: 192 SISYSKSCRTIVPNNQESMFIMDVLTFEDS------NQWRHLHSYEKVYNANGAYLNGVI 251
                       PNN  S  IM +LTF  S      NQWR LHS   +   +G YLNG I
Sbjct: 195 -----------NPNNNSS--IMYILTFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFI 254

Query: 252 YWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCT-------ICQLDGTIYAIFH 311
           YW+ +K + K+ EY IYAL+VETEQIELS V L +G   T       + Q +G++YA F+
Sbjct: 255 YWMGRK-QYKENEYTIYALNVETEQIELSAV-LHLGPFSTSSIPGVSLKQFNGSVYATFY 314

Query: 312 IDWTTINKTIQIWRMES---WIREFVIGDIPN 313
           ID  T N  IQ+WRM+    WI+EFVI DIPN
Sbjct: 315 IDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPN 324

BLAST of Lsi06G014040 vs. TAIR 10
Match: AT3G07870.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-11
Identity = 78/321 (24.30%), Postives = 145/321 (45.17%), Query Frame = 0

Query: 18  LPPFIGETIFSKLVVSN----LLVCKTWNDLVLDYA-VSTKFRFLTNVFFIFTTDEFRNQ 77
           LP  I   IFS+L +S+    + VC++W  ++  +  +S+     T    +         
Sbjct: 28  LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLL--------- 87

Query: 78  FRDLHMNEPHNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCNGLLLISKNT 137
              LH + P    +H+++L+ ++  +   TK  +L+F        +   CNGLL +S + 
Sbjct: 88  ---LHCDSPIRNGLHFLDLSEEE--KRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSL 147

Query: 138 HYCSCDGIFNPMTNEFL-------KFHADIHVFGFGFSPTTKQYKLFRVV--------NS 197
           +  S   ++NP T   L       K+H    VFGFGF   TK+YK+ ++V        N+
Sbjct: 148 YNDSL-YLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNN 207

Query: 198 ISYSKSCRTIVPNNQESMFIMDVLTFEDSNQWRHLHS--YEKVYNANGAYLNGVIYWLAK 257
             Y    R     ++  +  +   T + S  WR L    Y+ V  ++ A +NG ++++ +
Sbjct: 208 GIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTR 267

Query: 258 -KREDKKKEYVIYAL-DVETEQIELSIVLLQVGSNCTICQLDGTIYAIFHIDWTTINKTI 309
            +R    +++V + L D E ++I          +N  +  L G + A+ + ++  ++   
Sbjct: 268 PRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLD--- 327

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SFC72.5e-1024.30F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LWG11.8e-7551.47F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 ... [more]
A0A0A0LPC61.2e-7449.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1[more]
A0A0A0LUP71.2e-7147.77F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G014430 PE=4 ... [more]
A0A5D3DMB75.7e-5845.48F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140... [more]
A0A5A7TCF31.1e-5645.48F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 ... [more]
Match NameE-valueIdentityDescription
XP_038875053.13.0e-7764.14F-box protein At3g07870-like [Benincasa hispida][more]
XP_038890298.19.3e-7151.21F-box protein At3g07870-like [Benincasa hispida][more]
XP_038879760.12.4e-6648.02uncharacterized protein LOC120071509 [Benincasa hispida][more]
KAE8653057.17.9e-6251.19hypothetical protein Csa_020016 [Cucumis sativus][more]
TYK24751.11.2e-5745.48F-box protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G07870.11.8e-1124.30F-box and associated interaction domains-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 121..299
e-value: 7.4E-18
score: 62.7
NoneNo IPR availablePANTHERPTHR47993:SF20F-BOX FAMILY PROTEINcoord: 24..309
NoneNo IPR availablePANTHERPTHR47993OS09G0372900 PROTEIN-RELATEDcoord: 24..309

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G014040.1Lsi06G014040.1mRNA