Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTTTTACTAAAATGTAGGAAGTAACTAATTTTGAATCTAATATCTATTTTTAAAATTAAAACTGAAATCCGAGTTTGTGGGATTACATTTCCACATATATAGTAATTTTTCTAACAAAGAAAAACCAAAGCTTAGTGGTCTTTGAATATGGAGAAGGTGGAAATGAGCAAGAGGAGAATGATTATGAAGTGGGGAAGGGATCTCCCACCTTTTATTGGTGAAACAATCTTCTCTAAACTTGTTGTCTCCAATCTCCTTGTTTGTAAAACTTGGAATGATCTAGTTTTAGACTATGCTGTCTCTACTAAATTTCGATTTCTTACAAATGTTTTTTTTATCTTCACCACTGATGAATTCCGTAATCAATTCCGCGATCTGCATATGAATGAGCCACACAATTTCAAAATGCATTATATCAATCTTAATGCTAAAAAAGATTTGGAATTGGAATTTACTAAATCAAGCTCATTGCAATTTGATGGGGATTGGTCCTACCTCATAATGAGGAATCAATGTAATGGTTTGTTGCTTATTTCCAAAAATACTCATTATTGTTCATGTGATGGCATATTCAATCCCATGACTAATGAGTTCATCCAGATTCCTGAAATTCCACGCTGATATTCATGTCTTCGGATTTGGTTTCAGCCCTACTACAAAACAATACAAATTATTCAGAGTTGTTAACTCAATTAGTTACTCAAAAAGTTGTAGGACTATTGTCCCTAACAACCAAGAATCTATGTTTATAATGGACGTTTTGACTTTTGGTAGAAGACTCTAACCAATGGAGGCATCTTCACTCTTATGAAAAAGTTTACAATGCTAATGGTGCTTACTTGAATGGAGTCATCTATTGGTTGGCAAAAAAAAGAGAAGATAAAAAGAAAGAGTATGTTATATATGCTCTTGATGTTGAAACTGAACAAATTGAATTGAGTATTGTTCTCTTGCAAGTTGGCTCTAACTGTACAATATGTCAACTTGATGGTACCATTTATGCAATTTTTCACATCGACTGGACAACAATTAACAAGACCATTCAAATTTGGAGAATGGAATCATGGATTAGAGAATTTGTTATTGGTGATATACCAAATTATTGA
mRNA sequence
ATGATGGTGGAAATGAGCAAGAGGAGAATGATTATGAAGTGGGGAAGGGATCTCCCACCTTTTATTGGTGAAACAATCTTCTCTAAACTTGTTGTCTCCAATCTCCTTGTTTGTAAAACTTGGAATGATCTAGTTTTAGACTATGCTGTCTCTACTAAATTTCGATTTCTTACAAATGTTTTTTTTATCTTCACCACTGATGAATTCCGTAATCAATTCCGCGATCTGCATATGAATGAGCCACACAATTTCAAAATGCATTATATCAATCTTAATGCTAAAAAAGATTTGGAATTGGAATTTACTAAATCAAGCTCATTGCAATTTGATGGGGATTGGTCCTACCTCATAATGAGGAATCAATGTAATGGTTTGTTGCTTATTTCCAAAAATACTCATTATTGTTCATGTGATGGCATATTCAATCCCATGACTAATGAATTCCTGAAATTCCACGCTGATATTCATGTCTTCGGATTTGGTTTCAGCCCTACTACAAAACAATACAAATTATTCAGAGTTGTTAACTCAATTAGTTACTCAAAAAGTTGTAGGACTATTGTCCCTAACAACCAAGAATCTATGTTTATAATGGACGTTTTGACTTTTGAAGACTCTAACCAATGGAGGCATCTTCACTCTTATGAAAAAGTTTACAATGCTAATGGTGCTTACTTGAATGGAGTCATCTATTGGTTGGCAAAAAAAAGAGAAGATAAAAAGAAAGAGTATGTTATATATGCTCTTGATGTTGAAACTGAACAAATTGAATTGAGTATTGTTCTCTTGCAAGTTGGCTCTAACTGTACAATATGTCAACTTGATGGTACCATTTATGCAATTTTTCACATCGACTGGACAACAATTAACAAGACCATTCAAATTTGGAGAATGGAATCATGGATTAGAGAATTTGTTATTGGTGATATACCAAATTATTGA
Coding sequence (CDS)
ATGATGGTGGAAATGAGCAAGAGGAGAATGATTATGAAGTGGGGAAGGGATCTCCCACCTTTTATTGGTGAAACAATCTTCTCTAAACTTGTTGTCTCCAATCTCCTTGTTTGTAAAACTTGGAATGATCTAGTTTTAGACTATGCTGTCTCTACTAAATTTCGATTTCTTACAAATGTTTTTTTTATCTTCACCACTGATGAATTCCGTAATCAATTCCGCGATCTGCATATGAATGAGCCACACAATTTCAAAATGCATTATATCAATCTTAATGCTAAAAAAGATTTGGAATTGGAATTTACTAAATCAAGCTCATTGCAATTTGATGGGGATTGGTCCTACCTCATAATGAGGAATCAATGTAATGGTTTGTTGCTTATTTCCAAAAATACTCATTATTGTTCATGTGATGGCATATTCAATCCCATGACTAATGAATTCCTGAAATTCCACGCTGATATTCATGTCTTCGGATTTGGTTTCAGCCCTACTACAAAACAATACAAATTATTCAGAGTTGTTAACTCAATTAGTTACTCAAAAAGTTGTAGGACTATTGTCCCTAACAACCAAGAATCTATGTTTATAATGGACGTTTTGACTTTTGAAGACTCTAACCAATGGAGGCATCTTCACTCTTATGAAAAAGTTTACAATGCTAATGGTGCTTACTTGAATGGAGTCATCTATTGGTTGGCAAAAAAAAGAGAAGATAAAAAGAAAGAGTATGTTATATATGCTCTTGATGTTGAAACTGAACAAATTGAATTGAGTATTGTTCTCTTGCAAGTTGGCTCTAACTGTACAATATGTCAACTTGATGGTACCATTTATGCAATTTTTCACATCGACTGGACAACAATTAACAAGACCATTCAAATTTGGAGAATGGAATCATGGATTAGAGAATTTGTTATTGGTGATATACCAAATTATTGA
Protein sequence
MMVEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNLLVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHADIHVFGFGFSPTTKQYKLFRVVNSISYSKSCRTIVPNNQESMFIMDVLTFEDSNQWRHLHSYEKVYNANGAYLNGVIYWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCTICQLDGTIYAIFHIDWTTINKTIQIWRMESWIREFVIGDIPNY
Homology
BLAST of Lsi06G014040 vs. ExPASy Swiss-Prot
Match:
Q9SFC7 (F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 2.5e-10
Identity = 78/321 (24.30%), Postives = 145/321 (45.17%), Query Frame = 0
Query: 18 LPPFIGETIFSKLVVSN----LLVCKTWNDLVLDYA-VSTKFRFLTNVFFIFTTDEFRNQ 77
LP I IFS+L +S+ + VC++W ++ + +S+ T +
Sbjct: 28 LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLL--------- 87
Query: 78 FRDLHMNEPHNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCNGLLLISKNT 137
LH + P +H+++L+ ++ + TK +L+F + CNGLL +S +
Sbjct: 88 ---LHCDSPIRNGLHFLDLSEEE--KRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSL 147
Query: 138 HYCSCDGIFNPMTNEFL-------KFHADIHVFGFGFSPTTKQYKLFRVV--------NS 197
+ S ++NP T L K+H VFGFGF TK+YK+ ++V N+
Sbjct: 148 YNDSL-YLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNN 207
Query: 198 ISYSKSCRTIVPNNQESMFIMDVLTFEDSNQWRHLHS--YEKVYNANGAYLNGVIYWLAK 257
Y R ++ + + T + S WR L Y+ V ++ A +NG ++++ +
Sbjct: 208 GIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTR 267
Query: 258 -KREDKKKEYVIYAL-DVETEQIELSIVLLQVGSNCTICQLDGTIYAIFHIDWTTINKTI 309
+R +++V + L D E ++I +N + L G + A+ + ++ ++
Sbjct: 268 PRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLD--- 327
BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match:
A0A0A0LWG1 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 SV=1)
HSP 1 Score: 292.7 bits (748), Expect = 1.8e-75
Identity = 175/340 (51.47%), Postives = 223/340 (65.59%), Query Frame = 0
Query: 3 VEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLT 62
+E+S+RRM + G+ LPP I +TIFSKLV+S+L LV TWNDLVLDYA ST+ +FL
Sbjct: 11 MEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQFLK 70
Query: 63 NVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKK-------DLELEFTKSSSLQFDG 122
N F + T+D N + N KMH INL+ ++ DLE EF KS+SLQFDG
Sbjct: 71 NAFLLSTSDRGLNY-------KLCNPKMHCINLDTRQLSNDFDFDLESEFIKSASLQFDG 130
Query: 123 DWSY-LIMRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHA-----DIHVFGFGFSPT 182
DW+Y +IM CNGL+LISK + Y C GIFNPMTNEFL+ D +++GFGFSP
Sbjct: 131 DWTYTIIMAGSCNGLMLISKCSDYTWCQGIFNPMTNEFLQVSEHGTFDDFYLYGFGFSPI 190
Query: 183 TKQYKLFRVVNSISYSKSCRTIVPNNQESMFIMDVLTFEDS---------NQWRHLHSYE 242
TKQYKLFRV + CR + ++ + M+VLTF S NQWR LH+
Sbjct: 191 TKQYKLFRVFDK---GFRCRR-TSSTVDTHYTMEVLTFGRSGTNHSIPIHNQWRRLHTLP 250
Query: 243 KVYNANGAYLNGVIYWLAK-KREDKKKEYVIYALDVETEQIELSIVLLQVGSN--CTICQ 302
A+G YLNG+IYWL K K +DK+K+YVIYALDVETE IE+++V LQV SN I Q
Sbjct: 251 FEIVADGVYLNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVV-LQVPSNGYGKIHQ 310
Query: 303 LDGTIYAIFHIDWTTINKTIQIWRM---ESWIREFVIGDI 311
+GTIYA FHI+W ++TIQ+WRM +SW+R+FVI DI
Sbjct: 311 FNGTIYATFHINWEKDSRTIQVWRMQEKDSWVRKFVICDI 338
BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match:
A0A0A0LPC6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1)
HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 167/338 (49.41%), Postives = 218/338 (64.50%), Query Frame = 0
Query: 3 VEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLT 62
+EM +RRM + WG+ LPP I +TIFSKLV+SNL VCKTWN LVL YA ST+ +FLT
Sbjct: 27 MEMGERRMSIDWGKGLPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLT 86
Query: 63 NVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKK-------DLELEFTKSSSLQFDG 122
N F + T+D N E N KMH INL+ ++ DLE EF KS SLQF G
Sbjct: 87 NAFLLSTSDRMLNY-------ELCNPKMHCINLDNRQSSNDVDFDLEWEFIKSGSLQFYG 146
Query: 123 DWSYLI-MRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHA-----DIHVFGFGFSPT 182
DW+++I + + CNGL+ ISK + Y C GIFNPMTNEF + D + +GFG S
Sbjct: 147 DWTFMILLAHPCNGLMFISKCSDYTWCQGIFNPMTNEFFQVSEQDTFDDFYHYGFGLSAI 206
Query: 183 TKQYKLFRVVNSISYSKSCRTIVP-NNQESMFIMDVLTFEDS--------NQWRHLHSYE 242
+KQYKLFRV +I YS+ R ++ ++ + M+VLTF S NQWRHLH+
Sbjct: 207 SKQYKLFRVSEAIPYSERFRLMITFGRDDTHYTMEVLTFGRSGTNHIPIHNQWRHLHNL- 266
Query: 243 KVYNANGAYLNGVIYWLAKKREDK-KKEYVIYALDVETEQIELSIVLLQVGSNCTICQLD 302
+G YLNG+IYWL K++ K KKEYVIYALDVETEQIE+S++L S+ + +
Sbjct: 267 SCDLIHGVYLNGIIYWLGKEKGKKEKKEYVIYALDVETEQIEMSVILQVQASDGKMHPFN 326
Query: 303 GTIYAIFHIDWTTINKTIQIWRME---SWIREFVIGDI 311
GTIYA+F+I+W ++TIQ+W M+ SWIR+FVI DI
Sbjct: 327 GTIYALFYINWEKDSRTIQVWSMQEKCSWIRQFVIRDI 356
BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match:
A0A0A0LUP7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G014430 PE=4 SV=1)
HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 161/337 (47.77%), Postives = 211/337 (62.61%), Query Frame = 0
Query: 3 VEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLT 62
+EM +RRM + WG+ LPP I + IFSKLV+SNL VCKTWN LVL YA ST+ +FLT
Sbjct: 27 MEMGERRMSIDWGKGLPPLIAKIIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLT 86
Query: 63 NVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKK-----DLELEFTKSSSLQFDGDW 122
N F + T+D+ N E N KMH INL+ + DLE+EF KS S QF GDW
Sbjct: 87 NAFLLSTSDQMLNY-------ELCNPKMHSINLDNTQCSDDVDLEMEFIKSGSFQFYGDW 146
Query: 123 SYLI-MRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHA-----DIHVFGFGFSPTTK 182
+++I M + CNGL+ ISK + Y C GIFNPMTNEF + D + +GFG SP TK
Sbjct: 147 TFMILMAHPCNGLVFISKCSDYTWCQGIFNPMTNEFFQVSEQDTFDDFYNYGFGLSPVTK 206
Query: 183 QYKLFRVVNSISYSKSCRTI-VPNNQESMFIMDVLTFEDS--------NQWRHLH--SYE 242
QYKLFR +I YSK R + + ++ ++M+VLTF S NQWRHLH SY+
Sbjct: 207 QYKLFRTSKAIPYSKRFRLVSTCSTDDTHYMMEVLTFGRSGTNHIPIHNQWRHLHNLSYD 266
Query: 243 KVYNANGAYLNGVIYWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCTICQLDG 302
V G YLNG+I+ KK +K++Y IYALD ETEQIE+S++L + + +G
Sbjct: 267 IVVGDGGVYLNGIIFGWEKKNVKRKRKYDIYALDDETEQIEMSVILQVHARDGKMHLFNG 326
Query: 303 TIYAIFHIDWTTINKTIQIWRME---SWIREFVIGDI 311
TIYA F+ +W + T+Q+W M+ SWIR+FVI DI
Sbjct: 327 TIYATFYTNWEKDDLTVQVWSMQEKHSWIRKFVISDI 356
BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match:
A0A5D3DMB7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140 PE=4 SV=1)
HSP 1 Score: 234.6 bits (597), Expect = 5.7e-58
Identity = 151/332 (45.48%), Postives = 194/332 (58.43%), Query Frame = 0
Query: 12 MKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTD 71
MK GR LPP I I +LV+SNL +V KTWN +LDYA +F F+ +T
Sbjct: 15 MKLGRGLPPHIVREILRRLVISNLPNLRVVSKTWNLFILDYA--HEFSSTNANAFLLSTS 74
Query: 72 EFRNQFRDLHMNEPHNFKMHY-----INLNAKKDLELEFTKSSSLQFDGDWSYL-IMRNQ 131
+ +DL+ P + +H+ ++L+ DLELE+TK SL FDGDWS++ +M N
Sbjct: 75 DTGPGNKDLN---PKMYCIHFDTTKHLDLDLDFDLELEWTKPPSLSFDGDWSFIPMMDNS 134
Query: 132 CNGLLLISKNTHYCSCDGIFNPMTNEFL-----KFHADIHVFGFGFSPTTKQYKLFRVVN 191
CNGL+ I K + DGIFNPMTNEFL + D + +G GFSPTTKQYK+FRV
Sbjct: 135 CNGLVFIRKCAFFSRSDGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV-- 194
Query: 192 SISYSKSCRTIVPNNQESMFIMDVLTFEDS------NQWRHLHSYEKVYNANGAYLNGVI 251
PNN S IM +LTF S NQWR LHS + +G YLNG I
Sbjct: 195 -----------NPNNNSS--IMYILTFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFI 254
Query: 252 YWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCT-------ICQLDGTIYAIFH 311
YW+ +K + K+ EY IYAL+VETEQIELS V L +G T + Q +G++YA F+
Sbjct: 255 YWMGRK-QYKENEYTIYALNVETEQIELSAV-LHLGPFSTSSIPGVSLKQFNGSVYATFY 314
Query: 312 IDWTTINKTIQIWRMES---WIREFVIGDIPN 313
ID T N IQ+WRM+ WI+EFVI DIPN
Sbjct: 315 IDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPN 324
BLAST of Lsi06G014040 vs. ExPASy TrEMBL
Match:
A0A5A7TCF3 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 PE=4 SV=1)
HSP 1 Score: 230.3 bits (586), Expect = 1.1e-56
Identity = 151/332 (45.48%), Postives = 194/332 (58.43%), Query Frame = 0
Query: 12 MKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTD 71
MK GR LPP I I +LV+SNL +V KTWN +LDYA +F F+ +T
Sbjct: 12 MKLGRGLPPHIVSEILRRLVISNLPNLRVVSKTWNLFILDYA--HEFSSTNANAFLLSTS 71
Query: 72 EFRNQFRDLHMNEPHNFKMHY-----INLNAKKDLELEFTKSSSLQFDGDWSYL-IMRNQ 131
+ +DL+ P + +H+ ++L+ DLELE+TK SL FDGDWS++ +M N
Sbjct: 72 DTGPGNKDLN---PKMYCIHFDTTKHLDLDLDFDLELEWTKPPSLSFDGDWSFIPMMDNS 131
Query: 132 CNGLLLISKNTHYCSCDGIFNPMTNEFL-----KFHADIHVFGFGFSPTTKQYKLFRVVN 191
CNGL+ I K + DGIFNPMTNEFL + D + +G GFSPTTKQYK+FRV
Sbjct: 132 CNGLVFIRKCAFF--SDGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV-- 191
Query: 192 SISYSKSCRTIVPNNQESMFIMDVLTFEDS------NQWRHLHSYEKVYNANGAYLNGVI 251
PNN S IM +LTF S NQWR LHS + +G YLNG I
Sbjct: 192 -----------NPNNNSS--IMYILTFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFI 251
Query: 252 YWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCT-------ICQLDGTIYAIFH 311
YW+ +K + K+ EY IYAL+VETEQIELS V L +G T + Q +G++YA F+
Sbjct: 252 YWMGRK-QYKENEYTIYALNVETEQIELSAV-LHLGPFSTSSIPGVSLKQFNGSVYATFY 311
Query: 312 IDWTTINKTIQIWRMES---WIREFVIGDIPN 313
ID T N IQ+WRM+ WI+EFVI DIPN
Sbjct: 312 IDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPN 319
BLAST of Lsi06G014040 vs. NCBI nr
Match:
XP_038875053.1 (F-box protein At3g07870-like [Benincasa hispida])
HSP 1 Score: 299.7 bits (766), Expect = 3.0e-77
Identity = 161/251 (64.14%), Postives = 185/251 (73.71%), Query Frame = 0
Query: 82 HNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCNGLLLISKNTHYCSCDGIF 141
H+ ++ NL D ELEFTKS SLQFDG WSY+I+RNQCNGL+ ISKNT YC CDGIF
Sbjct: 69 HDKRLCKKNLQTDFDFELEFTKSGSLQFDGGWSYVILRNQCNGLVFISKNTFYCKCDGIF 128
Query: 142 NPMTNEFL---KFHADIHVFGFGFSPTTKQYKLFRVVNSISYSKSCRTIVPNNQESMFIM 201
NPMTNEF+ +F+ DI+ FGFGFSPTTKQYKLFRV +SI+YS+S RTIVPN QES IM
Sbjct: 129 NPMTNEFIQVPEFYDDIYDFGFGFSPTTKQYKLFRVADSIAYSESSRTIVPNTQESKSIM 188
Query: 202 DVLTFEDSN------QWRHLH--SYEKVYNANGAYLNGVIYWLAK-KREDKKKEYVIYAL 261
DVLTF S QWRHLH S+E NGAYLNGVIYWL + K +D K YVIYAL
Sbjct: 189 DVLTFGRSGTNPNPYQWRHLHTLSFETEKVCNGAYLNGVIYWLVREKGKDNKLMYVIYAL 248
Query: 262 DVETEQIELSIVL-----LQVGSNCTICQLDGTIYAIFHIDWTTINKTIQIWRM---ESW 313
DVETEQIELS VL ++VG + Q +GTIYA FHI+W T++KT Q+WRM ESW
Sbjct: 249 DVETEQIELSAVLQEVIDVEVGRG-RLYQFNGTIYATFHINWATVSKTFQVWRMRENESW 308
BLAST of Lsi06G014040 vs. NCBI nr
Match:
XP_038890298.1 (F-box protein At3g07870-like [Benincasa hispida])
HSP 1 Score: 278.1 bits (710), Expect = 9.3e-71
Identity = 169/330 (51.21%), Postives = 210/330 (63.64%), Query Frame = 0
Query: 12 MKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTD 71
MK GR LP I IFSKLV+S+L L+ KTWND+VLDYA S+ FLTN FF+ T D
Sbjct: 4 MKLGRGLPRRIVREIFSKLVISDLPNLRLISKTWNDMVLDYANSSHHEFLTNAFFLSTCD 63
Query: 72 EFRNQFRDLHMNEPHNFKMHYINLNAKK------DLELEFTKSSSLQFDGDWSYLIMRNQ 131
+ +P N KMH I + K DLE E+TKSSSL FDG+W+++ + N
Sbjct: 64 ---------NRLDPRNLKMHCIRFDTTKHLDVDFDLESEWTKSSSLCFDGEWTFMAIMNY 123
Query: 132 CNGLLLISKNTHYCSCDGIFNPMTNEFL-----KFHADIHVFGFGFSPTTKQYKLFRVVN 191
C+GLLLI K +Y CDGIFNPMTNEFL + DI+ FGFGF+ TTKQYKLFRV +
Sbjct: 124 CSGLLLICKCANYTRCDGIFNPMTNEFLQVPRGQLDNDIYYFGFGFTTTTKQYKLFRVCD 183
Query: 192 SISYSKSCRTIVPNNQESMFIMDVLTFEDS------NQWRHLHSYEKVYNANGAYLNGVI 251
S+S++C ES IMDVLTF S NQWR+LH ++NGAYLNG I
Sbjct: 184 --SFSRNCEF------ESGSIMDVLTFSRSGTNANHNQWRYLHYLPLDIHSNGAYLNGFI 243
Query: 252 YWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCT-----ICQLDGTIYAIFHID 311
YW+ K+ E+K+ EY IY LDVETE+IELSIVL CT + Q + ++YAIF I+
Sbjct: 244 YWIGKE-EEKENEYAIYVLDVETEKIELSIVLEICPPLCTSKVGGMQQFNDSVYAIFLIN 303
Query: 312 WTTINKTIQIWRMES---WIREFVIGDIPN 313
T N +IQ+WRM+ WIREFV+ DIPN
Sbjct: 304 QPTGN-SIQVWRMQEKDLWIREFVVDDIPN 314
BLAST of Lsi06G014040 vs. NCBI nr
Match:
XP_038879760.1 (uncharacterized protein LOC120071509 [Benincasa hispida])
HSP 1 Score: 263.5 bits (672), Expect = 2.4e-66
Identity = 158/329 (48.02%), Postives = 206/329 (62.61%), Query Frame = 0
Query: 11 IMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTT 70
I+ WGR+L IGE+IF +LVVSNL +VCKTWN L+LDY+ S+K LTN F +FT
Sbjct: 3 IVNWGRELQEDIGESIFGRLVVSNLATCRVVCKTWNSLILDYSSSSK--LLTNDFILFTR 62
Query: 71 DEFRNQF---RDLHMNEPHNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCN 130
D N L+ + H F++ +L+ D+E E K +SL+FDGDWS+++ CN
Sbjct: 63 D--GNPICGSSSLYNPKMHCFRLD--DLDVDSDMEFEVNKFASLRFDGDWSFILPIRSCN 122
Query: 131 GLLLISKNTHYCSCDGIFNPMTNEFLK-----FHADIHVFGFGFSPTTKQYKLFRVVNSI 190
GLLLISK+T YCSC GIFNPMTNEF + F A+ +V+GFGF PTTK YKLFR+
Sbjct: 123 GLLLISKSTFYCSCMGIFNPMTNEFFRVPRDNFDANKYVYGFGFIPTTKHYKLFRITIED 182
Query: 191 SYSKSCRTIVPNNQESMFIMDVLTF----------EDSNQWRHLHSYEKVYNANGAYLNG 250
S S R M+VLTF + NQWRHL+S GAY NG
Sbjct: 183 EPSYSSR------------MEVLTFGRGGINPNPKQSQNQWRHLYSIPSDICCKGAYFNG 242
Query: 251 VIYWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVG-----SNCTICQLDGTIYAIFH 310
+IYWL +++ D++ EYVIY LDVE+E+I+LS V L+VG + I Q +G++YAIFH
Sbjct: 243 IIYWLGREK-DEQNEYVIYTLDVESEKIKLSAV-LKVGPFSHYNKVYIQQFNGSVYAIFH 302
BLAST of Lsi06G014040 vs. NCBI nr
Match:
KAE8653057.1 (hypothetical protein Csa_020016 [Cucumis sativus])
HSP 1 Score: 248.4 bits (633), Expect = 7.9e-62
Identity = 150/293 (51.19%), Postives = 190/293 (64.85%), Query Frame = 0
Query: 3 VEMSKRRMIMKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLT 62
+E+S+RRM + G+ LPP I +TIFSKLV+S+L LV TWNDLVLDYA ST+ +FL
Sbjct: 11 MEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQFLK 70
Query: 63 NVFFIFTTDEFRNQFRDLHMNEPHNFKMHYINLNAKK-------DLELEFTKSSSLQFDG 122
N F + T+D N + N KMH INL+ ++ DLE EF KS+SLQFDG
Sbjct: 71 NAFLLSTSDRGLNY-------KLCNPKMHCINLDTRQLSNDFDFDLESEFIKSASLQFDG 130
Query: 123 DWSY-LIMRNQCNGLLLISKNTHYCSCDGIFNPMTNEFLKFHA-----DIHVFGFGFSPT 182
DW+Y +IM CNGL+LISK + Y C GIFNPMTNEFL+ D +++GFGFSP
Sbjct: 131 DWTYTIIMAGSCNGLMLISKCSDYTWCQGIFNPMTNEFLQVSEHGTFDDFYLYGFGFSPI 190
Query: 183 TKQYKLFRVVNSISYSKSCRTIVPNNQESMFIMDVLTFEDS---------NQWRHLHSYE 242
TKQYKLFRV + CR + ++ + M+VLTF S NQWR LH+
Sbjct: 191 TKQYKLFRVFDK---GFRCRR-TSSTVDTHYTMEVLTFGRSGTNHSIPIHNQWRRLHTLP 250
Query: 243 KVYNANGAYLNGVIYWLAK-KREDKKKEYVIYALDVETEQIELSIVLLQVGSN 269
A+G YLNG+IYWL K K +DK+K+YVIYALDVETE IE+++V LQV SN
Sbjct: 251 FEIVADGVYLNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVV-LQVPSN 291
BLAST of Lsi06G014040 vs. NCBI nr
Match:
TYK24751.1 (F-box protein [Cucumis melo var. makuwa])
HSP 1 Score: 234.6 bits (597), Expect = 1.2e-57
Identity = 151/332 (45.48%), Postives = 194/332 (58.43%), Query Frame = 0
Query: 12 MKWGRDLPPFIGETIFSKLVVSNL----LVCKTWNDLVLDYAVSTKFRFLTNVFFIFTTD 71
MK GR LPP I I +LV+SNL +V KTWN +LDYA +F F+ +T
Sbjct: 15 MKLGRGLPPHIVREILRRLVISNLPNLRVVSKTWNLFILDYA--HEFSSTNANAFLLSTS 74
Query: 72 EFRNQFRDLHMNEPHNFKMHY-----INLNAKKDLELEFTKSSSLQFDGDWSYL-IMRNQ 131
+ +DL+ P + +H+ ++L+ DLELE+TK SL FDGDWS++ +M N
Sbjct: 75 DTGPGNKDLN---PKMYCIHFDTTKHLDLDLDFDLELEWTKPPSLSFDGDWSFIPMMDNS 134
Query: 132 CNGLLLISKNTHYCSCDGIFNPMTNEFL-----KFHADIHVFGFGFSPTTKQYKLFRVVN 191
CNGL+ I K + DGIFNPMTNEFL + D + +G GFSPTTKQYK+FRV
Sbjct: 135 CNGLVFIRKCAFFSRSDGIFNPMTNEFLQVPRHELDGDNYFYGLGFSPTTKQYKMFRV-- 194
Query: 192 SISYSKSCRTIVPNNQESMFIMDVLTFEDS------NQWRHLHSYEKVYNANGAYLNGVI 251
PNN S IM +LTF S NQWR LHS + +G YLNG I
Sbjct: 195 -----------NPNNNSS--IMYILTFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFI 254
Query: 252 YWLAKKREDKKKEYVIYALDVETEQIELSIVLLQVGSNCT-------ICQLDGTIYAIFH 311
YW+ +K + K+ EY IYAL+VETEQIELS V L +G T + Q +G++YA F+
Sbjct: 255 YWMGRK-QYKENEYTIYALNVETEQIELSAV-LHLGPFSTSSIPGVSLKQFNGSVYATFY 314
Query: 312 IDWTTINKTIQIWRMES---WIREFVIGDIPN 313
ID T N IQ+WRM+ WI+EFVI DIPN
Sbjct: 315 IDPKTCNSVIQVWRMQEKDLWIKEFVIDDIPN 324
BLAST of Lsi06G014040 vs. TAIR 10
Match:
AT3G07870.1 (F-box and associated interaction domains-containing protein )
HSP 1 Score: 67.8 bits (164), Expect = 1.8e-11
Identity = 78/321 (24.30%), Postives = 145/321 (45.17%), Query Frame = 0
Query: 18 LPPFIGETIFSKLVVSN----LLVCKTWNDLVLDYA-VSTKFRFLTNVFFIFTTDEFRNQ 77
LP I IFS+L +S+ + VC++W ++ + +S+ T +
Sbjct: 28 LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLL--------- 87
Query: 78 FRDLHMNEPHNFKMHYINLNAKKDLELEFTKSSSLQFDGDWSYLIMRNQCNGLLLISKNT 137
LH + P +H+++L+ ++ + TK +L+F + CNGLL +S +
Sbjct: 88 ---LHCDSPIRNGLHFLDLSEEE--KRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSL 147
Query: 138 HYCSCDGIFNPMTNEFL-------KFHADIHVFGFGFSPTTKQYKLFRVV--------NS 197
+ S ++NP T L K+H VFGFGF TK+YK+ ++V N+
Sbjct: 148 YNDSL-YLYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNN 207
Query: 198 ISYSKSCRTIVPNNQESMFIMDVLTFEDSNQWRHLHS--YEKVYNANGAYLNGVIYWLAK 257
Y R ++ + + T + S WR L Y+ V ++ A +NG ++++ +
Sbjct: 208 GIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTR 267
Query: 258 -KREDKKKEYVIYAL-DVETEQIELSIVLLQVGSNCTICQLDGTIYAIFHIDWTTINKTI 309
+R +++V + L D E ++I +N + L G + A+ + ++ ++
Sbjct: 268 PRRHVPDRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLD--- 327
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SFC7 | 2.5e-10 | 24.30 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0LWG1 | 1.8e-75 | 51.47 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 ... | [more] |
A0A0A0LPC6 | 1.2e-74 | 49.41 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014420 PE=4 SV=1 | [more] |
A0A0A0LUP7 | 1.2e-71 | 47.77 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G014430 PE=4 ... | [more] |
A0A5D3DMB7 | 5.7e-58 | 45.48 | F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140... | [more] |
A0A5A7TCF3 | 1.1e-56 | 45.48 | F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 ... | [more] |
Match Name | E-value | Identity | Description | |
AT3G07870.1 | 1.8e-11 | 24.30 | F-box and associated interaction domains-containing protein | [more] |