Lsi06G013530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G013530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	CLAVATA3/ESR (CLE)-related protein 13
Location	chr06: 24120103 .. 24120297 (+)
RNA-Seq Expression	Lsi06G013530
Synteny	Lsi06G013530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCAAATTTGATTTCACCATCTTTCTTCAACATCTCCAAGCTGATCACCACCACCACCATCACCACCGTCATCACCATCACCACCGTCACGATCACGGTGATTCTCCCGGCACTGCAGCGGAGATTGATCCCCGGTACGGCGTCGAAAAACGCCTCGTCCCAACTGGTCCAAATCCATTGCACCATTGA

mRNA sequence

ATGTCTTCCAAATTTGATTTCACCATCTTTCTTCAACATCTCCAAGCTGATCACCACCACCACCATCACCACCGTCATCACCATCACCACCGTCACGATCACGGTGATTCTCCCGGCACTGCAGCGGAGATTGATCCCCGGTACGGCGTCGAAAAACGCCTCGTCCCAACTGGTCCAAATCCATTGCACCATTGA

Coding sequence (CDS)

ATGTCTTCCAAATTTGATTTCACCATCTTTCTTCAACATCTCCAAGCTGATCACCACCACCACCATCACCACCGTCATCACCATCACCACCGTCACGATCACGGTGATTCTCCCGGCACTGCAGCGGAGATTGATCCCCGGTACGGCGTCGAAAAACGCCTCGTCCCAACTGGTCCAAATCCATTGCACCATTGA

Protein sequence

MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPNPLHH

Homology

[Close]

BLAST of Lsi06G013530 vs. ExPASy Swiss-Prot
Match: A2X462 (Protein FON2 SPARE1 OS=Oryza sativa subsp. indica OX=39946 GN=FOS1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-09
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 18  HHHHHHHRHHHHHRHDHGDS---PGTAA----EIDPRYGVEKRLVPTGPNPLHH 65
           HHHH HH HHHH  HD  +    P TAA    E+DPR+GV+KRLVPTGPNPLHH
Sbjct: 78  HHHHRHHGHHHHRGHDRWNRKGVPPTAAGPGEEVDPRFGVQKRLVPTGPNPLHH 131

[Close]

BLAST of Lsi06G013530 vs. ExPASy Swiss-Prot
Match: Q6Z6T2 (Inactive protein FON2 SPARE1 OS=Oryza sativa subsp. japonica OX=39947 GN=FOS1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-09
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 18  HHHHHHHRHHHHHRHDHGDS---PGTAA----EIDPRYGVEKRLVPTGPNPLHH 65
           HHHH HH HHHH  HD  +    P TAA    E+DPR+GV+KRLVPTGPNPLHH
Sbjct: 78  HHHHRHHGHHHHRGHDRWNRKGVPPTAAGPGEEVDPRFGVQKRLVPTGPNPLHH 131

[Close]

BLAST of Lsi06G013530 vs. ExPASy Swiss-Prot
Match: Q6NMF0 (CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana OX=3702 GN=CLE13 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.7e-07
Identity = 30/60 (50.00%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 5   FDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPNPLHH 64
           FDFT FL+ L+  +H                  P   +EIDPRYGVEKRLVP+GPNPLHH
Sbjct: 62  FDFTPFLKDLRRSNHRK--------------ALPAGGSEIDPRYGVEKRLVPSGPNPLHH 107

[Close]

BLAST of Lsi06G013530 vs. ExPASy Swiss-Prot
Match: Q29PU4 (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana OX=3702 GN=CLE12 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-05
Identity = 31/64 (48.44%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 1   MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPN 60
           +S +FDFT F            H R +  H H  G+      EIDPRYGVEKR VP+GPN
Sbjct: 68  LSDRFDFTPF------------HSRDNSRHNHRSGEQ-YDGDEIDPRYGVEKRRVPSGPN 118

Query: 61  PLHH 65
           PLHH
Sbjct: 128 PLHH 118

[Close]

BLAST of Lsi06G013530 vs. ExPASy TrEMBL
Match: A0A200Q3L1 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1211g119 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-11
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 2   SSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGT-AAEIDPRYGVEKRLVPTGPN 61
           S+KFDFT F +H    HHHHHHH HH+HH       PG+   EIDPRYGVEKRLVPTGPN
Sbjct: 57  STKFDFTPFYRH---HHHHHHHHHHHNHHYKPEPPPPGSDDHEIDPRYGVEKRLVPTGPN 116

Query: 62  PLHH 65
           PLHH
Sbjct: 117 PLHH 117

[Close]

BLAST of Lsi06G013530 vs. ExPASy TrEMBL
Match: W9SUW2 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022293 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.1e-11
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1   MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPN 60
           ++SK +FT FL+     H HHHH  HHH H+H   D  G  +EIDPRYGVEKRLVPTGPN
Sbjct: 60  LASKINFTPFLR-----HRHHHHRHHHHRHKHAQPDPGGGGSEIDPRYGVEKRLVPTGPN 118

Query: 61  PLHH 65
           PLHH
Sbjct: 120 PLHH 118

[Close]

BLAST of Lsi06G013530 vs. ExPASy TrEMBL
Match: A0A4S4DWZ0 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_025860 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1   MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPN 60
           ++SKFDFT FL+H     HHH+HHRHHHHH  D        +E+DPRYGVEKR VPTGPN
Sbjct: 106 LASKFDFTPFLKH----RHHHYHHRHHHHHEPDE-------SEVDPRYGVEKRRVPTGPN 158

Query: 61  PLHH 65
           PLHH
Sbjct: 166 PLHH 158

[Close]

BLAST of Lsi06G013530 vs. ExPASy TrEMBL
Match: A0A6A4Q706 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr07g0178581 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1   MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTA-AEIDPRYGVEKRLVPTGP 60
           +++ FDFT FL H    HHH HHHRHHHH+ +     P  A +EIDPRYGVEKRLVPTGP
Sbjct: 51  LATGFDFTPFLHH-HHHHHHRHHHRHHHHNENHMLVKPEPAGSEIDPRYGVEKRLVPTGP 110

Query: 61  NPLHH 65
           NPLHH
Sbjct: 111 NPLHH 114

[Close]

BLAST of Lsi06G013530 vs. ExPASy TrEMBL
Match: M0ZJR5 (CLE12 OS=Solanum tuberosum OX=4113 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-10
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 1   MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPN 60
           ++S FDFT F++H+     HHHHH HHHHH+ D  + P  + EID RYGVEKRLVPTGPN
Sbjct: 53  IASNFDFTPFVKHV-----HHHHHHHHHHHKVDVYE-PAGSHEIDQRYGVEKRLVPTGPN 110

Query: 61  PLHH 65
           PLHH
Sbjct: 113 PLHH 110

[Close]

BLAST of Lsi06G013530 vs. NCBI nr
Match: OVA05043.1 (hypothetical protein BVC80_1211g119 [Macleaya cordata])

HSP 1 Score: 77.4 bits (189), Expect = 5.0e-11
Identity = 43/64 (67.19%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 2   SSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGT-AAEIDPRYGVEKRLVPTGPN 61
           S+KFDFT F +H    HHHHHHH HH+HH       PG+   EIDPRYGVEKRLVPTGPN
Sbjct: 57  STKFDFTPFYRH---HHHHHHHHHHHNHHYKPEPPPPGSDDHEIDPRYGVEKRLVPTGPN 116

Query: 62  PLHH 65
           PLHH
Sbjct: 117 PLHH 117

[Close]

BLAST of Lsi06G013530 vs. NCBI nr
Match: EXC28057.1 (hypothetical protein L484_022293 [Morus notabilis])

HSP 1 Score: 76.6 bits (187), Expect = 8.4e-11
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 1   MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPN 60
           ++SK +FT FL+     H HHHH  HHH H+H   D  G  +EIDPRYGVEKRLVPTGPN
Sbjct: 60  LASKINFTPFLR-----HRHHHHRHHHHRHKHAQPDPGGGGSEIDPRYGVEKRLVPTGPN 118

Query: 61  PLHH 65
           PLHH
Sbjct: 120 PLHH 118

[Close]

BLAST of Lsi06G013530 vs. NCBI nr
Match: THG07355.1 (hypothetical protein TEA_025860 [Camellia sinensis var. sinensis])

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1   MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPN 60
           ++SKFDFT FL+H     HHH+HHRHHHHH  D        +E+DPRYGVEKR VPTGPN
Sbjct: 106 LASKFDFTPFLKH----RHHHYHHRHHHHHEPDE-------SEVDPRYGVEKRRVPTGPN 158

Query: 61  PLHH 65
           PLHH
Sbjct: 166 PLHH 158

[Close]

BLAST of Lsi06G013530 vs. NCBI nr
Match: KAE9609678.1 (hypothetical protein Lalb_Chr07g0178581 [Lupinus albus])

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-10
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 1   MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTA-AEIDPRYGVEKRLVPTGP 60
           +++ FDFT FL H    HHH HHHRHHHH+ +     P  A +EIDPRYGVEKRLVPTGP
Sbjct: 51  LATGFDFTPFLHH-HHHHHHRHHHRHHHHNENHMLVKPEPAGSEIDPRYGVEKRLVPTGP 110

Query: 61  NPLHH 65
           NPLHH
Sbjct: 111 NPLHH 114

[Close]

BLAST of Lsi06G013530 vs. NCBI nr
Match: XP_020098071.1 (protein FON2 SPARE1-like [Ananas comosus])

HSP 1 Score: 73.6 bits (179), Expect = 7.2e-10
Identity = 42/76 (55.26%), Postives = 46/76 (60.53%), Query Frame = 0


Query: 4   KFDFTIFLQHLQA--DHHHHHHHRHHHHHRHDH-------------GDSPGTAAEIDPRY 63
           KFD + F    Q+  DHHHHHHH HHHHH H H               +P    EIDPRY
Sbjct: 56  KFDASTFHSTRQSINDHHHHHHHHHHHHHSHHHHGRHSRLPAVVKPKPNPDDGDEIDPRY 115

Query: 64  GVEKRLVPTGPNPLHH 65
           GV+KRLVPTGPNPLHH
Sbjct: 116 GVQKRLVPTGPNPLHH 131

[Close]

BLAST of Lsi06G013530 vs. TAIR 10
Match: AT1G73965.1 (CLAVATA3/ESR-RELATED 13 )

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-08
Identity = 30/60 (50.00%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 5   FDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPNPLHH 64
           FDFT FL+ L+  +H                  P   +EIDPRYGVEKRLVP+GPNPLHH
Sbjct: 62  FDFTPFLKDLRRSNHRK--------------ALPAGGSEIDPRYGVEKRLVPSGPNPLHH 107

[Close]

BLAST of Lsi06G013530 vs. TAIR 10
Match: AT1G68795.1 (CLAVATA3/ESR-RELATED 12 )

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 31/64 (48.44%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 1   MSSKFDFTIFLQHLQADHHHHHHHRHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPN 60
           +S +FDFT F            H R +  H H  G+      EIDPRYGVEKR VP+GPN
Sbjct: 68  LSDRFDFTPF------------HSRDNSRHNHRSGEQ-YDGDEIDPRYGVEKRRVPSGPN 118

Query: 61  PLHH 65
           PLHH
Sbjct: 128 PLHH 118

[Close]

BLAST of Lsi06G013530 vs. TAIR 10
Match: AT1G26600.1 (CLAVATA3/ESR-RELATED 9 )

HSP 1 Score: 47.8 bits (112), Expect = 3.9e-06
Identity = 19/22 (86.36%), Postives = 22/22 (100.00%), Query Frame = 0


Query: 43  EIDPRYGVEKRLVPTGPNPLHH 65
           EIDPRYGV+KRLVP+GPNPLH+
Sbjct: 99  EIDPRYGVDKRLVPSGPNPLHN 120

[Close]

BLAST of Lsi06G013530 vs. TAIR 10
Match: AT1G69320.1 (CLAVATA3/ESR-RELATED 10 )

HSP 1 Score: 41.2 bits (95), Expect = 3.7e-04
Identity = 23/40 (57.50%), Postives = 25/40 (62.50%), Query Frame = 0


Query: 25  RHHHHHRHDHGDSPGTAAEIDPRYGVEKRLVPTGPNPLHH 65
           R H   R      P    EID RYGVEKRLVP+GPNPLH+
Sbjct: 68  RIHRSSRQPLFSPPPPPTEIDQRYGVEKRLVPSGPNPLHN 107

The following BLAST results are available for this feature:

BLAST of Lsi06G013530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2X462	1.3e-09	64.81	Protein FON2 SPARE1 OS=Oryza sativa subsp. indica OX=39946 GN=FOS1 PE=2 SV=1	[more]
Q6Z6T2	1.3e-09	64.81	Inactive protein FON2 SPARE1 OS=Oryza sativa subsp. japonica OX=39947 GN=FOS1 PE...	[more]
Q6NMF0	7.7e-07	50.00	CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana OX=3702 GN=CLE13 P...	[more]
Q29PU4	1.9e-05	48.44	CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana OX=3702 GN=CLE12 P...	[more]

BLAST of Lsi06G013530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A200Q3L1	2.4e-11	67.19	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1211g119 PE=3 SV=1	[more]
W9SUW2	4.1e-11	62.50	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022293 PE=3 SV=1	[more]
A0A4S4DWZ0	1.2e-10	64.06	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0258...	[more]
A0A6A4Q706	2.0e-10	64.62	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr07g0178581 PE=3 SV=1	[more]
M0ZJR5	2.7e-10	62.50	CLE12 OS=Solanum tuberosum OX=4113 PE=3 SV=1	[more]

BLAST of Lsi06G013530 vs. NCBI nr


Match Name	E-value	Identity	Description
OVA05043.1	5.0e-11	67.19	hypothetical protein BVC80_1211g119 [Macleaya cordata]	[more]
EXC28057.1	8.4e-11	62.50	hypothetical protein L484_022293 [Morus notabilis]	[more]
THG07355.1	2.5e-10	64.06	hypothetical protein TEA_025860 [Camellia sinensis var. sinensis]	[more]
KAE9609678.1	4.2e-10	64.62	hypothetical protein Lalb_Chr07g0178581 [Lupinus albus]	[more]
XP_020098071.1	7.2e-10	55.26	protein FON2 SPARE1-like [Ananas comosus]	[more]

BLAST of Lsi06G013530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73965.1	5.5e-08	50.00	CLAVATA3/ESR-RELATED 13	[more]
AT1G68795.1	1.3e-06	48.44	CLAVATA3/ESR-RELATED 12	[more]
AT1G26600.1	3.9e-06	86.36	CLAVATA3/ESR-RELATED 9	[more]
AT1G69320.1	3.7e-04	57.50	CLAVATA3/ESR-RELATED 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..33
None	No IPR available	PANTHER	PTHR34359:SF15	INACTIVE PROTEIN FON2 SPARE1	coord: 3..64
IPR039618	CLAVATA3/ESR (CLE)-related protein 9/10/11/12/13	PANTHER	PTHR34359	CLAVATA3/ESR (CLE)-RELATED PROTEIN 10	coord: 3..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G013530.1	Lsi06G013530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005615	extracellular space
cellular_component	GO:0016020	membrane