Lsi06G013510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G013510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription initiation factor IIE subunit alpha
Location	chr06: 24114364 .. 24117535 (+)
RNA-Seq Expression	Lsi06G013510
Synteny	Lsi06G013510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTATGTTAAAGCTTATTATGCTGCTATACTGAAGAAGCAACAAGAGCTTGAAGAAGCTGCTAAGGGACAGCAGGAATTATCCAGTACAGAGGTTACTGAAAACGTGGCTAACACAAATTCCAGTCGCCAGGTGGGAATGAAGGCAAAACGTGAAGAGGATGAAGATGATGATATTGAGTGGGAGGAGGCTCCAATAGGTGGTGAGACACTTTTTCTGTCCATGTTTGATTCTTTAAATTTTTATGATGTTTATATCTGCTCATTATTCTGCCATGCTATATAAGCACCTTGATAGTAAGATAAATTCGTAAATGACATAAAGAGCATCGCATGCTTTTATTTGTTTCGAGATTCAGCATGGTTTTATATGTGAGAAAGAAAGTGATTTAGTTTGAGAAATATCTTCTTGGTAATCATCATTTTCTTGTGCGTATGAATTTTTTGAAAAGGAAACAAAACTTTTCATTGATAAAATGAAAAGAGACTAATGCTCAAGGATACAATAACCTTAAACGGAAAGAGAAAATGCGAAAAAACAACCGGAAAAGAAATACTATTGAAATACAAAGAGGTTGCGTATGAATTTCTCATCCTTATGCAAGGCCAAGCTAATCTTCTTTGTATAGTTCCAATTTAATCGAGAAGGGATTTTGTGTATCAATTTTATGTTTTATGTGGCTTAAATATTTTGCTTGTTATTTGTGTTTGGAGCCGTGTACCGACTTTCTAGTTTCAACACATAATCGATTATTCATATAGAAAAAGAACTTGATTGATTACGACTTGCAACCAAAGATATATATTTTTTTTTAAAATTTATTTATTTTACGCTGTCATACTATACCAGCTTTTGAAGTGAAAGTGGTTTCAAATTTGCATATCAAACTCACTACTGTGTACTTGGGAGTTCTGGGAAGATACTCAGCGAGTTTAGGTTCTTAATTATTGATTTTTCAGTCGTACGTTAGATTTTATTGTGTTTTTTAGACTAACTGTTTAAAGATGTCAAAATTAACAGTTAAGTAGAACTCTTCTTTAATTGGTTGTTTGTGCCATATTTTATGTGTAAAAGTAAGTTGGGTTTAGGAAGAACCTTACATTTCATGCCATATTTTACAGGCAATGCAAATGAAAATTTCAAGGTTGGTGATTTGAATGTTGAAGCATCAGCTTCGGTAGAAGATGAAGAAGAAGATGATGTGGATTGGGAGGAAGGTTGAAGAGGCAAAGAAAATTTTATACCCCAAATCTGACACAAGGTGATATTACTTTTCTTCCATCTGGAAGGCCTTAATGAATTGAGGTAGAAGCTCTGCAGTTAATCTTGAGCAGCCGTGTTACTTGTTATGTTGGAGCCGATTTTAAAGATCTCTAGCCTATAATTGCTTGATTTACTGCTGACATTTCATCTTGGGGACTCCGATGAATTGAACTATTTGGTGTGCTGGAAGAAAAGATCAAGAAAAATAGATATTTAATTGATTTATCACTCACCAATTAAGTTGGAACAAGAGAGGAATGTCAATCCATTTGTTACCAATACAGTGGGATAAACTCGTGTGCTAACTTAGTATTGAAGCAATACGGTGTATTTTACATTAGTTTTTACTTGTTTAGCTGATATAGAAGTTTAGAAATAAAGACAGCGATTGCCAAACAATTTCTCCTCGCTCTCCCTGTAGAAAAACAGAACATAACAAGTTAAATATCTTTTTAAATATTGCATAATGCATATGCTTGTTTGTATGTTTATATTCTCATTGATTACAATAACAATTAACAGCTCTCATCAGATCACAATTCCGTTCAGGATTTTACTTGTTGAGTATTTGTAGATTGCAGCAGCGTGGAATTTAGAAGGTACTAATCCTACATAAAACTGTTTACTTTTCACAGTTTTGTCTCAAGAAGACATTCTTATGGTGGACCATTCAGCACCTTTGATATCCTCTCAATATGTTGCCCTCTTTCCCAGCTTTGTTCATATCAACTTTTAGAATAGAGGAGCTCACAACATCTAAGCTTGACCCGTACAACTTATAGAACAACGATCTTACATGAATAGGATCTGTTCTATAGGTTGTACAATTGTACTCTTGAGTTCTAAAGGGACCGTACAACTTATAGAACAACGACCTTACTTGAACGGGACATGTTCTATAGGTTGAACAACTGTGTCCTTGAGTTCTAAAGAGACCGTACAACTTATAGAACAAATCCTAATCAAGTATGATCCTTGCTATATAGGAAGTGATTGAAACAATCTTAGTGGGGTAGCTGGAAAGAAGAAAGGGAAAGGGAGTAGGAAATCCACAAGCCATCAAGATCAAGGCCATCCACTCTGATATACCAAATGTGAACTAATACCCCAGAATTTTCTAGTGTTATTTGGTGAAACTGTCTGTGGTTTAAGCAAAAAAGTTGTAGGTGGGGGGTGATTTGACTTTCCCCCACTTCTTCTCAGGAAATTTCCCAACCCATGCCGACATTTCTGCATAAGAATTGTCGTTCCTCTCTGTTGAATGATCGGATGGTCAATATTTGATGAAGTGATAAGATTAGCATATGATATCCATGGCCAAGGGAGGGAGGGCATAGCCGACAAAGTGATTTAGAAAAAAAAGCCATTCAAAGTCCATATTCCCACTTCCTGAAGAAAAGGGAGTGCTTAGTTTTTAACAAAAAGATTGTTTAGGAACTTGGGTTTGCACACTCAACCATATTGGATCTTTGTTGTTTCTATATTGCTTTGCTTCCTCTATTCCAAGAACCACCATACATAGTCTATCTCAAGGCCTTTCTCCGATCTTCAAATGGGACTTTATTGTTTTTCCTTTTCTGATTTGACACCATCCTTTTCAAATTAGATCCTAGAACAGGAGGAATAAACTAGTATTTTCTTTATCAGTTTCTTACACTAAAGAAAGAGTGTGTGTAAAGGAAGCAATGTTTTTTAGTATTTTTCTTTTTTTCTGCTGAGATGAAACTGTTTGTTGTTATATAGGCGTGCAAGTGAATTGCTCATTAAACAGGTAAATTCTTTTTAGAGAATGAAATGGAAATCAGAGCAAAGCAAGTCAAACGAAAAATCATGTGAGGTAATATATTTGTATAATATTTATGATAAGATAGATGAGAAATTACGACTTCTCTAGCTGCAGCATTTGA

mRNA sequence

ATGACTTATTATGCTGCTATACTGAAGAAGCAACAAGAGCTTGAAGAAGCTGCTAAGGGACAGCAGGAATTATCCAGTACAGAGGTTACTGAAAACGTGGCTAACACAAATTCCAGTCGCCAGGTGGGAATGAAGGCAAAACGTGAAGAGGATGAAGATGATGATATTGAGTGGGAGGAGGCTCCAATAGGTGGCAATGCAAATGAAAATTTCAAGGTTGGTGATTTGAATGTTGAAGCATCAGCTTCGGTAGAAGATGAAGAAGAAGATGATGTGGATTGGGAGGAAGATTGCAGCAGCGTGGAATTTAGAAGGCGTGCAAGTGAATTGCTCATTAAACAGAGAATGAAATGGAAATCAGAGCAAAGCAAGTCAAACGAAAAATCATGTGAGATGAGAAATTACGACTTCTCTAGCTGCAGCATTTGA

Coding sequence (CDS)

ATGACTTATTATGCTGCTATACTGAAGAAGCAACAAGAGCTTGAAGAAGCTGCTAAGGGACAGCAGGAATTATCCAGTACAGAGGTTACTGAAAACGTGGCTAACACAAATTCCAGTCGCCAGGTGGGAATGAAGGCAAAACGTGAAGAGGATGAAGATGATGATATTGAGTGGGAGGAGGCTCCAATAGGTGGCAATGCAAATGAAAATTTCAAGGTTGGTGATTTGAATGTTGAAGCATCAGCTTCGGTAGAAGATGAAGAAGAAGATGATGTGGATTGGGAGGAAGATTGCAGCAGCGTGGAATTTAGAAGGCGTGCAAGTGAATTGCTCATTAAACAGAGAATGAAATGGAAATCAGAGCAAAGCAAGTCAAACGAAAAATCATGTGAGATGAGAAATTACGACTTCTCTAGCTGCAGCATTTGA

Protein sequence

MTYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANENFKVGDLNVEASASVEDEEEDDVDWEEDCSSVEFRRRASELLIKQRMKWKSEQSKSNEKSCEMRNYDFSSCSI

Homology

[Close]

BLAST of Lsi06G013510 vs. ExPASy TrEMBL
Match: A0A5D3DYI4 (Transcription initiation factor IIE subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00230 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEA 62
           YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSRQVGMKAKREE D+DDDIEWEEA
Sbjct: 381 YYAAILKKQQELEEAAKGQQELSSTEVTESVANTNSSRQVGMKAKREEDDDDDDIEWEEA 440

Query: 63  PIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE 97
           PIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Sbjct: 441 PIGGNANENYKV-DLNVEASALVEDEEEDDVDWEE 474

[Close]

BLAST of Lsi06G013510 vs. ExPASy TrEMBL
Match: A0A0A0LSL9 (Transcription initiation factor IIE subunit alpha OS=Cucumis sativus OX=3659 GN=Csa_1G020880 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 5.3e-35
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAP 62
           YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSRQVGMKAKREEDEDDDIEWEEAP
Sbjct: 381 YYAAILKKQQELEEAAKGQQELSSTEVTESVANTNSSRQVGMKAKREEDEDDDIEWEEAP 440

Query: 63  IGGNANENFKVGDLNVEASASVEDEEE--DDVDWEE 97
           IGGNANEN+KV DLNVEASA VE+EEE  DDVDWEE
Sbjct: 441 IGGNANENYKV-DLNVEASALVEEEEEEDDDVDWEE 475

[Close]

BLAST of Lsi06G013510 vs. ExPASy TrEMBL
Match: A0A5A7UX12 (Transcription initiation factor IIE subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003550 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.0e-35
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEA 62
           YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSR+VGMKAKREE D+DDDIEWEEA
Sbjct: 381 YYAAILKKQQELEEAAKGQQELSSTEVTESVANTNSSRRVGMKAKREEDDDDDDIEWEEA 440

Query: 63  PIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE 97
           PIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Sbjct: 441 PIGGNANENYKV-DLNVEASALVEDEEEDDVDWEE 474

[Close]

BLAST of Lsi06G013510 vs. ExPASy TrEMBL
Match: A0A6J1E5J2 (Transcription initiation factor IIE subunit alpha OS=Cucurbita moschata OX=3662 GN=LOC111430131 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.0e-35
Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREED-EDDDIEWEEA 62
           YYAAILKKQQELEEAAK Q+ELSSTEVTEN++ TNSSRQVGMKAKREED E+DDIEWEEA
Sbjct: 383 YYAAILKKQQELEEAAKAQKELSSTEVTENLSYTNSSRQVGMKAKREEDEEEDDIEWEEA 442

Query: 63  PIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE 97
           PI GNANEN+KVGDLNVEASASVEDEEEDDVDWEE
Sbjct: 443 PIEGNANENYKVGDLNVEASASVEDEEEDDVDWEE 477

[Close]

BLAST of Lsi06G013510 vs. ExPASy TrEMBL
Match: A0A1S3BW39 (Transcription initiation factor IIE subunit alpha OS=Cucumis melo OX=3656 GN=LOC103494104 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.0e-35
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEA 62
           YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSR+VGMKAKREE D+DDDIEWEEA
Sbjct: 381 YYAAILKKQQELEEAAKGQQELSSTEVTESVANTNSSRRVGMKAKREEDDDDDDIEWEEA 440

Query: 63  PIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE 97
           PIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Sbjct: 441 PIGGNANENYKV-DLNVEASALVEDEEEDDVDWEE 474

[Close]

BLAST of Lsi06G013510 vs. NCBI nr
Match: XP_038880289.1 (general transcription factor IIE subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 7.6e-36
Identity = 88/94 (93.62%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAP 62
           YYAAILKKQQELEEAAKGQ+EL STEVTENVAN NSSRQVGMKAKREEDE+DDIEWEEAP
Sbjct: 383 YYAAILKKQQELEEAAKGQEELPSTEVTENVANRNSSRQVGMKAKREEDEEDDIEWEEAP 442

Query: 63  IGGNANENFKVGDLNVEASASVEDEEEDDVDWEE 97
           IGGNANEN+KV DLNVEASASVEDEEEDDVDWEE
Sbjct: 443 IGGNANENYKV-DLNVEASASVEDEEEDDVDWEE 475

[Close]

BLAST of Lsi06G013510 vs. NCBI nr
Match: XP_023515738.1 (general transcription factor IIE subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023515739.1 general transcription factor IIE subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-35
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEA 62
           YYAAILKKQQELEEAAKGQ+ELSSTEVTEN++ TNSSRQVGMKAKREE DE+DDIEWEEA
Sbjct: 383 YYAAILKKQQELEEAAKGQKELSSTEVTENLSYTNSSRQVGMKAKREEDDEEDDIEWEEA 442

Query: 63  PIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE 97
           PI GNANEN+KVGDLNVEASASVEDEEEDDVDWEE
Sbjct: 443 PIDGNANENYKVGDLNVEASASVEDEEEDDVDWEE 477

[Close]

BLAST of Lsi06G013510 vs. NCBI nr
Match: TYK28395.1 (general transcription factor IIE subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 6.4e-35
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEA 62
           YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSRQVGMKAKREE D+DDDIEWEEA
Sbjct: 381 YYAAILKKQQELEEAAKGQQELSSTEVTESVANTNSSRQVGMKAKREEDDDDDDIEWEEA 440

Query: 63  PIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE 97
           PIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Sbjct: 441 PIGGNANENYKV-DLNVEASALVEDEEEDDVDWEE 474

[Close]

BLAST of Lsi06G013510 vs. NCBI nr
Match: XP_004138223.2 (general transcription factor IIE subunit 1 [Cucumis sativus] >KGN63797.1 hypothetical protein Csa_014172 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-34
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAP 62
           YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSRQVGMKAKREEDEDDDIEWEEAP
Sbjct: 381 YYAAILKKQQELEEAAKGQQELSSTEVTESVANTNSSRQVGMKAKREEDEDDDIEWEEAP 440

Query: 63  IGGNANENFKVGDLNVEASASVEDEEE--DDVDWEE 97
           IGGNANEN+KV DLNVEASA VE+EEE  DDVDWEE
Sbjct: 441 IGGNANENYKV-DLNVEASALVEEEEEEDDDVDWEE 475

[Close]

BLAST of Lsi06G013510 vs. NCBI nr
Match: XP_008453364.1 (PREDICTED: general transcription factor IIE subunit 1 [Cucumis melo] >KAA0058049.1 general transcription factor IIE subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-34
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREE-DEDDDIEWEEA 62
           YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSR+VGMKAKREE D+DDDIEWEEA
Sbjct: 381 YYAAILKKQQELEEAAKGQQELSSTEVTESVANTNSSRRVGMKAKREEDDDDDDIEWEEA 440

Query: 63  PIGGNANENFKVGDLNVEASASVEDEEEDDVDWEE 97
           PIGGNANEN+KV DLNVEASA VEDEEEDDVDWEE
Sbjct: 441 PIGGNANENYKV-DLNVEASALVEDEEEDDVDWEE 474

[Close]

BLAST of Lsi06G013510 vs. TAIR 10
Match: AT1G03280.1 (Transcription factor TFIIE, alpha subunit )

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENV--ANTNSSRQVGMKAKREEDEDDD---IE 62
           YYA ++K+Q   E AA+  Q+ S+ E T  +      S RQV MKAKREEDED+D   +E
Sbjct: 383 YYAELMKQQ---ELAARRNQQESAGEPTSGIQSGTVYSGRQVSMKAKREEDEDEDEEEVE 442

Query: 63  WEE-APIGGNANENFKVGDLNVEASAS--VEDEEEDDVDWEE 97
           WEE AP+   AN N+KV DLNVEA AS   E+EEEDDVDWEE
Sbjct: 443 WEEKAPV--TANGNYKV-DLNVEAEASGGEEEEEEDDVDWEE 478

[Close]

BLAST of Lsi06G013510 vs. TAIR 10
Match: AT4G20340.1 (Transcription factor TFIIE, alpha subunit )

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAP 62
           YYAAI+++Q+   +  + +    ST      A T S RQVGMK+KREE E++D+EWEE  
Sbjct: 381 YYAAIMEQQKLAAKLNEQESAGESTTTDIESATTYSDRQVGMKSKREE-EEEDVEWEEG- 440

Query: 63  IGGNANENFKVGDLNVEASASVEDE---EEDDVDWEE 97
               AN N+KV DLNVEA  + E E   E+DD+DWEE
Sbjct: 441 ASVAANGNYKV-DLNVEAEEAEEKEDGDEDDDIDWEE 474

[Close]

BLAST of Lsi06G013510 vs. TAIR 10
Match: AT4G20810.1 (transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein )

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-09
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 3   YYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAP 62
           YYAAIL ++QEL E    Q+          +A ++S RQVGMK+KREE+E+     EEA 
Sbjct: 333 YYAAIL-EEQELAEKLNQQESAGKVTTDIELATSSSDRQVGMKSKREEEEE-----EEAS 392

Query: 63  IGGNANENFKVGDLNVEASASVEDEEEDDVDWEE 97
           +   AN N+KV DLNVEA  +  +++E+DVDW+E
Sbjct: 393 VA--ANGNYKV-DLNVEAEEA--EQDENDVDWQE 415

The following BLAST results are available for this feature:

BLAST of Lsi06G013510 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G013510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYI4	3.1e-35	93.68	Transcription initiation factor IIE subunit alpha OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0LSL9	5.3e-35	92.71	Transcription initiation factor IIE subunit alpha OS=Cucumis sativus OX=3659 GN=...	[more]
A0A5A7UX12	9.0e-35	92.63	Transcription initiation factor IIE subunit alpha OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1E5J2	9.0e-35	90.53	Transcription initiation factor IIE subunit alpha OS=Cucurbita moschata OX=3662 ...	[more]
A0A1S3BW39	9.0e-35	92.63	Transcription initiation factor IIE subunit alpha OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of Lsi06G013510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880289.1	7.6e-36	93.62	general transcription factor IIE subunit 1 isoform X1 [Benincasa hispida]	[more]
XP_023515738.1	2.9e-35	91.58	general transcription factor IIE subunit 1-like [Cucurbita pepo subsp. pepo] >XP...	[more]
TYK28395.1	6.4e-35	93.68	general transcription factor IIE subunit 1 [Cucumis melo var. makuwa]	[more]
XP_004138223.2	1.1e-34	92.71	general transcription factor IIE subunit 1 [Cucumis sativus] >KGN63797.1 hypothe...	[more]
XP_008453364.1	1.9e-34	92.63	PREDICTED: general transcription factor IIE subunit 1 [Cucumis melo] >KAA0058049...	[more]

BLAST of Lsi06G013510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03280.1	1.1e-13	55.88	Transcription factor TFIIE, alpha subunit	[more]
AT4G20340.1	1.2e-10	48.45	Transcription factor TFIIE, alpha subunit	[more]
AT4G20810.1	6.4e-09	46.81	transcription initiation factor IIE (TFIIE) alpha subunit family protein / gener...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G013510.1	Lsi06G013510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001113	transcription open complex formation at RNA polymerase II promoter
cellular_component	GO:0005673	transcription factor TFIIE complex