Lsi06G013380 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi06G013380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	AT-rich interactive domain protein
Location	chr06: 23967351 .. 23968910 (+)
RNA-Seq Expression	Lsi06G013380
Synteny	Lsi06G013380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGAATCGCATATCTCTCCCCTTATCCGCACGTAAAATCCTCTTCATTCTCCGAGTGTTCAGAGCTCACTCTCCTCCACTCAAATGGCTCTGACCATAACCAACGGCGGTGCCACCGGCGGCACCGGCGGGGGAATTCTCTACAGAACCTCCACTAGAACTCCTTCTAACCAATTCCTATTCCGCCGCAACGCGCTCTTTCCGCCGTCCAAAGAAGCCCGCACCCTCCATGTCGCTCAAGCCAAGAAATCCTCCTTCCGAACCGGCCGATTCGACAGTAAGAATCGGAGGAGCTCGACGACAACCAAGGAACAGGAAGAAGAAGACGAACGAAATCGGACGGCCGAGATTTTAAGCGACAGCCCCAACGTTGAAAATGCTGGCGTAGCGTTTGATGTGGATGAGAATCTGCCGGAATTGCCCGGGCTTCAGCCTGATTTCTGGGAGGGTCCGCAGTGGGATGCCCTAGGCTTCTTCCTGGAGTATTTGTGGGCTTTTGGCATCGTTTTCGCAGTAAGATTTTCCCCCTTCCTTTCATTTCACTAATTCTTTCCTTTAATCATTTTGATTGATTCTGTTATCTGTTTTAATCTTAGTTAGGATTGAGCTAAAGATTCAGATTAATATCTTAATTCCAGTAATCTATTTGCTTAAGTTGAAACATTTGTAATTAGCAGATGAGATTTGAGCTAAGCGAGGCCAAAACACTACTTTCTAGGAATATATTTAATCAGTAACCCAGCATTTTGATGGTTGAATTTCAATCTCAAAGTTCTTATTTGTTTCTTTATCCTAAACAGAACAGAATTTTGATATTTAACATCAGCTAGATGTTTTCTTTTGGGCAATTTTTCTACTAAAGGATAAAATAGTTTATGTTCTGTTATCTTTTTGTTAATGAGCGTTTCACTAATTCATTCATCATTATAATAGCTTATTGCATGTGGGATTGCTGTCACTACATATAACGAAGGAGCAACTGATTTCAAGGACACACCTGCATATAAAGAATCAGTTCAAACTCGAGAGATATTAGAAGAACCCGAGGCATCAAACCCAGATGTGTTTGAATCTAATCCAACTGAGGTGGCTCCAAGTTTGGAATGATCTTTGATATTTTGATATCAAAAACAGATTACACATCTTGGATACATTATCATCCTCCCAAGCAGTTAAAGAAGTGAAAAAGAAACAAAGGGTACTGTGTGAATTTGTAATGCCATATTTTTCTAGGTATGTTATGACAACTTTATTTTATTGTATCTAGTTAACATTTTGATCGTATATGTCTTAGTTTTCTTGTCAACATATTGTTTTTCTTTTAGGTCTTTCTTCTGTAACCTCGTCGACTTAGATTTCTCTCCTTAGGCTGTCTGTTTTAGGGAACAAGGGATAACACAAAACAGAGAACCATTTTTCTGCCAGCTTCTAAGAGGCTCGAATTGGTCGGGTGCAAATATTAAAATGCTAAGGAAACAACGTTATTTTGTTAAGAGAGTATTTAGCCAAAACAATCTAGTAGAAGTCTAATAATTGATTTCAATAAAGTACTACCCCATA

mRNA sequence

AATGAATCGCATATCTCTCCCCTTATCCGCACGTAAAATCCTCTTCATTCTCCGAGTGTTCAGAGCTCACTCTCCTCCACTCAAATGGCTCTGACCATAACCAACGGCGGTGCCACCGGCGGCACCGGCGGGGGAATTCTCTACAGAACCTCCACTAGAACTCCTTCTAACCAATTCCTATTCCGCCGCAACGCGCTCTTTCCGCCGTCCAAAGAAGCCCGCACCCTCCATGTCGCTCAAGCCAAGAAATCCTCCTTCCGAACCGGCCGATTCGACAGTAAGAATCGGAGGAGCTCGACGACAACCAAGGAACAGGAAGAAGAAGACGAACGAAATCGGACGGCCGAGATTTTAAGCGACAGCCCCAACGTTGAAAATGCTGGCGTAGCGTTTGATGTGGATGAGAATCTGCCGGAATTGCCCGGGCTTCAGCCTGATTTCTGGGAGGGTCCGCAGTGGGATGCCCTAGGCTTCTTCCTGGAGTATTTGTGGGCTTTTGGCATCGTTTTCGCACTTATTGCATGTGGGATTGCTGTCACTACATATAACGAAGGAGCAACTGATTTCAAGGACACACCTGCATATAAAGAATCAGTTCAAACTCGAGAGATATTAGAAGAACCCGAGGCATCAAACCCAGATGTGTTTGAATCTAATCCAACTGAGGTGGCTCCAAGTTTGGAATGATCTTTGATATTTTGATATCAAAAACAGATTACACATCTTGGATACATTATCATCCTCCCAAGCAGTTAAAGAAGTGAAAAAGAAACAAAGGGTACTGTGTGAATTTGTAATGCCATATTTTTCTAGGTATGTTATGACAACTTTATTTTATTGTATCTAGTTAACATTTTGATCGTATATGTCTTAGTTTTCTTGTCAACATATTGTTTTTCTTTTAGGTCTTTCTTCTGTAACCTCGTCGACTTAGATTTCTCTCCTTAGGCTGTCTGTTTTAGGGAACAAGGGATAACACAAAACAGAGAACCATTTTTCTGCCAGCTTCTAAGAGGCTCGAATTGGTCGGGTGCAAATATTAAAATGCTAAGGAAACAACGTTATTTTGTTAAGAGAGTATTTAGCCAAAACAATCTAGTAGAAGTCTAATAATTGATTTCAATAAAGTACTACCCCATA

Coding sequence (CDS)

ATGGCTCTGACCATAACCAACGGCGGTGCCACCGGCGGCACCGGCGGGGGAATTCTCTACAGAACCTCCACTAGAACTCCTTCTAACCAATTCCTATTCCGCCGCAACGCGCTCTTTCCGCCGTCCAAAGAAGCCCGCACCCTCCATGTCGCTCAAGCCAAGAAATCCTCCTTCCGAACCGGCCGATTCGACAGTAAGAATCGGAGGAGCTCGACGACAACCAAGGAACAGGAAGAAGAAGACGAACGAAATCGGACGGCCGAGATTTTAAGCGACAGCCCCAACGTTGAAAATGCTGGCGTAGCGTTTGATGTGGATGAGAATCTGCCGGAATTGCCCGGGCTTCAGCCTGATTTCTGGGAGGGTCCGCAGTGGGATGCCCTAGGCTTCTTCCTGGAGTATTTGTGGGCTTTTGGCATCGTTTTCGCACTTATTGCATGTGGGATTGCTGTCACTACATATAACGAAGGAGCAACTGATTTCAAGGACACACCTGCATATAAAGAATCAGTTCAAACTCGAGAGATATTAGAAGAACCCGAGGCATCAAACCCAGATGTGTTTGAATCTAATCCAACTGAGGTGGCTCCAAGTTTGGAATGA

Protein sequence

MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRTGRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPDFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEPEASNPDVFESNPTEVAPSLE

Homology

[Close]

BLAST of Lsi06G013380 vs. ExPASy TrEMBL
Match: A0A6J1BYA9 (uncharacterized protein LOC111006843 OS=Momordica charantia OX=3673 GN=LOC111006843 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.1e-94
Identity = 183/201 (91.04%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRT 60
           MALTITNGGA GG+GGGILYRTST+ PSNQFL RRNALFPPS EARTLHV QAKKSSFRT
Sbjct: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60

Query: 61  GRFDSKNRRSSTTTKEQ-EEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPDF 120
           GRFDSKNRRSSTTTKEQ EEE+ERNR AEI  D PNVENAGVAFDVDENLPELPGLQPDF
Sbjct: 61  GRFDSKNRRSSTTTKEQEEEEEERNRMAEIERDGPNVENAGVAFDVDENLPELPGLQPDF 120

Query: 121 WEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEE 180
           WEGP+WD LGFFLEYLWAFGI FALIACGIAVTTYNEGATDFKDTPAYKESVQT+E+LEE
Sbjct: 121 WEGPRWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEE 180

Query: 181 PEASNPDVFESNPTEVAPSLE 201
           PEASNPDVFESNPTEVAPSLE
Sbjct: 181 PEASNPDVFESNPTEVAPSLE 201

[Close]

BLAST of Lsi06G013380 vs. ExPASy TrEMBL
Match: A0A0A0LPS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G022520 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.7e-90
Identity = 177/200 (88.50%), Postives = 184/200 (92.00%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRT 60
           M LTITNGGAT GT GGILYRT TRTPSN FLFRRNALF PSKEARTLH+ QAKKSSFRT
Sbjct: 1   MPLTITNGGATVGTSGGILYRTFTRTPSNYFLFRRNALFHPSKEARTLHLVQAKKSSFRT 60

Query: 61  GRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPDFW 120
           GRFDSKNR+SSTT KEQEEE+ERNRTA +   SP VENAGV FDVDENLP+LPGLQPDFW
Sbjct: 61  GRFDSKNRKSSTTIKEQEEEEERNRTAGVEMGSPVVENAGVVFDVDENLPQLPGLQPDFW 120

Query: 121 EGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEP 180
           EGPQWDA GFFLEYLWAFGIVFA+IACGIAVTTYNEGATDFK+TPAYKESVQTREIL EP
Sbjct: 121 EGPQWDAFGFFLEYLWAFGIVFAIIACGIAVTTYNEGATDFKETPAYKESVQTREIL-EP 180

Query: 181 EASNPDVFESNPTEVAPSLE 201
           EASNPDVFESNPTEVAPSLE
Sbjct: 181 EASNPDVFESNPTEVAPSLE 199

[Close]

BLAST of Lsi06G013380 vs. ExPASy TrEMBL
Match: A0A5A7UV79 (Putative AT-rich interactive domain-containing protein 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00400 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.0e-89
Identity = 183/203 (90.15%), Postives = 185/203 (91.13%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRT-PSNQFLFRRNALFPPSKEARTLHVAQAKKSSFR 60
           M LTITNGGAT GT GGILYRT TRT PSN FLFRRNALF PSKEARTLHV QAKKSSFR
Sbjct: 1   MPLTITNGGATAGTTGGILYRTFTRTPPSNYFLFRRNALFHPSKEARTLHVVQAKKSSFR 60

Query: 61  TGRFDSKNRRSSTTTKEQ--EEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQP 120
           TGRFDSKNRRSSTT KEQ  EEE+ERNRTA I   SP VENAGV FDVDENLPELPGLQP
Sbjct: 61  TGRFDSKNRRSSTTIKEQDKEEEEERNRTAGIEMGSPIVENAGVVFDVDENLPELPGLQP 120

Query: 121 DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREIL 180
           DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFK+TPAYKESVQTREIL
Sbjct: 121 DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKETPAYKESVQTREIL 180

Query: 181 EEPEASNPDVFESNPTEVAPSLE 201
            EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 -EPEASNPDVFESNPTEVAPSLE 202

[Close]

BLAST of Lsi06G013380 vs. ExPASy TrEMBL
Match: A0A1S3BW57 (uncharacterized protein LOC103494120 OS=Cucumis melo OX=3656 GN=LOC103494120 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.0e-89
Identity = 183/203 (90.15%), Postives = 185/203 (91.13%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRT-PSNQFLFRRNALFPPSKEARTLHVAQAKKSSFR 60
           M LTITNGGAT GT GGILYRT TRT PSN FLFRRNALF PSKEARTLHV QAKKSSFR
Sbjct: 1   MPLTITNGGATAGTTGGILYRTFTRTPPSNYFLFRRNALFHPSKEARTLHVVQAKKSSFR 60

Query: 61  TGRFDSKNRRSSTTTKEQ--EEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQP 120
           TGRFDSKNRRSSTT KEQ  EEE+ERNRTA I   SP VENAGV FDVDENLPELPGLQP
Sbjct: 61  TGRFDSKNRRSSTTIKEQDKEEEEERNRTAGIEMGSPIVENAGVVFDVDENLPELPGLQP 120

Query: 121 DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREIL 180
           DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFK+TPAYKESVQTREIL
Sbjct: 121 DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKETPAYKESVQTREIL 180

Query: 181 EEPEASNPDVFESNPTEVAPSLE 201
            EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 -EPEASNPDVFESNPTEVAPSLE 202

[Close]

BLAST of Lsi06G013380 vs. ExPASy TrEMBL
Match: A0A6J1JIX0 (uncharacterized protein LOC111484859 OS=Cucurbita maxima OX=3661 GN=LOC111484859 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.2e-88
Identity = 178/202 (88.12%), Postives = 183/202 (90.59%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRT 60
           MALTITNGGAT GTGGGILYRTSTRTPSNQFLFRRNALF PSKEARTLHV  +KKSSFR 
Sbjct: 1   MALTITNGGATCGTGGGILYRTSTRTPSNQFLFRRNALFSPSKEARTLHVVHSKKSSFRI 60

Query: 61  GRFDSKNRRSSTTTKEQE--EEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPD 120
           GR DSKNRRSST+TKEQE  EE+ERNR AEI       ENAGVAFDVDENLPELPGLQPD
Sbjct: 61  GRIDSKNRRSSTSTKEQEEQEEEERNRMAEI------AENAGVAFDVDENLPELPGLQPD 120

Query: 121 FWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILE 180
           FWEG QWD LGFFLEYLWAFGI FA+IACGIAVTTYNEGATDFKDTPAYKESVQT+EILE
Sbjct: 121 FWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILE 180

Query: 181 EPEASNPDVFESNPTEVAPSLE 201
           EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 EPEASNPDVFESNPTEVAPSLE 196

[Close]

BLAST of Lsi06G013380 vs. NCBI nr
Match: XP_038876354.1 (uncharacterized protein LOC120068690 [Benincasa hispida])

HSP 1 Score: 371.3 bits (952), Expect = 5.2e-99
Identity = 192/200 (96.00%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRT 60
           MALTITNGGATGGTGGGILYR+STRTPSNQFL RRNALFPPSKEARTL+V QAKKSSFRT
Sbjct: 1   MALTITNGGATGGTGGGILYRSSTRTPSNQFLLRRNALFPPSKEARTLYVVQAKKSSFRT 60

Query: 61  GRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPDFW 120
           GRFD KNRRSSTTT+EQEEE ERNRTAEIL DSPNVENAGVAFDVDENLPELPGLQPDFW
Sbjct: 61  GRFDGKNRRSSTTTQEQEEE-ERNRTAEILRDSPNVENAGVAFDVDENLPELPGLQPDFW 120

Query: 121 EGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEP 180
           EGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEP
Sbjct: 121 EGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEP 180

Query: 181 EASNPDVFESNPTEVAPSLE 201
           EASNPDVFESNPTEVAPSLE
Sbjct: 181 EASNPDVFESNPTEVAPSLE 199

[Close]

BLAST of Lsi06G013380 vs. NCBI nr
Match: XP_022134616.1 (uncharacterized protein LOC111006843 [Momordica charantia])

HSP 1 Score: 355.9 bits (912), Expect = 2.3e-94
Identity = 183/201 (91.04%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRT 60
           MALTITNGGA GG+GGGILYRTST+ PSNQFL RRNALFPPS EARTLHV QAKKSSFRT
Sbjct: 1   MALTITNGGAAGGSGGGILYRTSTKIPSNQFLLRRNALFPPSNEARTLHVVQAKKSSFRT 60

Query: 61  GRFDSKNRRSSTTTKEQ-EEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPDF 120
           GRFDSKNRRSSTTTKEQ EEE+ERNR AEI  D PNVENAGVAFDVDENLPELPGLQPDF
Sbjct: 61  GRFDSKNRRSSTTTKEQEEEEEERNRMAEIERDGPNVENAGVAFDVDENLPELPGLQPDF 120

Query: 121 WEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEE 180
           WEGP+WD LGFFLEYLWAFGI FALIACGIAVTTYNEGATDFKDTPAYKESVQT+E+LEE
Sbjct: 121 WEGPRWDPLGFFLEYLWAFGIAFALIACGIAVTTYNEGATDFKDTPAYKESVQTQELLEE 180

Query: 181 PEASNPDVFESNPTEVAPSLE 201
           PEASNPDVFESNPTEVAPSLE
Sbjct: 181 PEASNPDVFESNPTEVAPSLE 201

[Close]

BLAST of Lsi06G013380 vs. NCBI nr
Match: XP_004138240.1 (uncharacterized protein LOC101218989 [Cucumis sativus] >KGN63813.1 hypothetical protein Csa_013143 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 9.8e-90
Identity = 177/200 (88.50%), Postives = 184/200 (92.00%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRT 60
           M LTITNGGAT GT GGILYRT TRTPSN FLFRRNALF PSKEARTLH+ QAKKSSFRT
Sbjct: 1   MPLTITNGGATVGTSGGILYRTFTRTPSNYFLFRRNALFHPSKEARTLHLVQAKKSSFRT 60

Query: 61  GRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPDFW 120
           GRFDSKNR+SSTT KEQEEE+ERNRTA +   SP VENAGV FDVDENLP+LPGLQPDFW
Sbjct: 61  GRFDSKNRKSSTTIKEQEEEEERNRTAGVEMGSPVVENAGVVFDVDENLPQLPGLQPDFW 120

Query: 121 EGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEP 180
           EGPQWDA GFFLEYLWAFGIVFA+IACGIAVTTYNEGATDFK+TPAYKESVQTREIL EP
Sbjct: 121 EGPQWDAFGFFLEYLWAFGIVFAIIACGIAVTTYNEGATDFKETPAYKESVQTREIL-EP 180

Query: 181 EASNPDVFESNPTEVAPSLE 201
           EASNPDVFESNPTEVAPSLE
Sbjct: 181 EASNPDVFESNPTEVAPSLE 199

[Close]

BLAST of Lsi06G013380 vs. NCBI nr
Match: XP_008453388.1 (PREDICTED: uncharacterized protein LOC103494120 [Cucumis melo] >KAA0041427.1 putative AT-rich interactive domain-containing protein 5A [Cucumis melo var. makuwa] >KAA0058066.1 putative AT-rich interactive domain-containing protein 5A [Cucumis melo var. makuwa] >TYK28412.1 putative AT-rich interactive domain-containing protein 5A [Cucumis melo var. makuwa])

HSP 1 Score: 337.4 bits (864), Expect = 8.3e-89
Identity = 183/203 (90.15%), Postives = 185/203 (91.13%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRT-PSNQFLFRRNALFPPSKEARTLHVAQAKKSSFR 60
           M LTITNGGAT GT GGILYRT TRT PSN FLFRRNALF PSKEARTLHV QAKKSSFR
Sbjct: 1   MPLTITNGGATAGTTGGILYRTFTRTPPSNYFLFRRNALFHPSKEARTLHVVQAKKSSFR 60

Query: 61  TGRFDSKNRRSSTTTKEQ--EEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQP 120
           TGRFDSKNRRSSTT KEQ  EEE+ERNRTA I   SP VENAGV FDVDENLPELPGLQP
Sbjct: 61  TGRFDSKNRRSSTTIKEQDKEEEEERNRTAGIEMGSPIVENAGVVFDVDENLPELPGLQP 120

Query: 121 DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREIL 180
           DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFK+TPAYKESVQTREIL
Sbjct: 121 DFWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKETPAYKESVQTREIL 180

Query: 181 EEPEASNPDVFESNPTEVAPSLE 201
            EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 -EPEASNPDVFESNPTEVAPSLE 202

[Close]

BLAST of Lsi06G013380 vs. NCBI nr
Match: XP_022987248.1 (uncharacterized protein LOC111484859 [Cucurbita maxima])

HSP 1 Score: 335.9 bits (860), Expect = 2.4e-88
Identity = 178/202 (88.12%), Postives = 183/202 (90.59%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRT 60
           MALTITNGGAT GTGGGILYRTSTRTPSNQFLFRRNALF PSKEARTLHV  +KKSSFR 
Sbjct: 1   MALTITNGGATCGTGGGILYRTSTRTPSNQFLFRRNALFSPSKEARTLHVVHSKKSSFRI 60

Query: 61  GRFDSKNRRSSTTTKEQE--EEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPD 120
           GR DSKNRRSST+TKEQE  EE+ERNR AEI       ENAGVAFDVDENLPELPGLQPD
Sbjct: 61  GRIDSKNRRSSTSTKEQEEQEEEERNRMAEI------AENAGVAFDVDENLPELPGLQPD 120

Query: 121 FWEGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILE 180
           FWEG QWD LGFFLEYLWAFGI FA+IACGIAVTTYNEGATDFKDTPAYKESVQT+EILE
Sbjct: 121 FWEGQQWDPLGFFLEYLWAFGIAFAVIACGIAVTTYNEGATDFKDTPAYKESVQTQEILE 180

Query: 181 EPEASNPDVFESNPTEVAPSLE 201
           EPEASNPDVFESNPTEVAPSLE
Sbjct: 181 EPEASNPDVFESNPTEVAPSLE 196

[Close]

BLAST of Lsi06G013380 vs. TAIR 10
Match: AT1G73885.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-29
Identity = 83/200 (41.50%), Postives = 116/200 (58.00%), Query Frame = 0


Query: 1   MALTITNGGATGGTGGGILYRTSTRTPSNQFLFRRNALFPPSKEARTLHVAQAKKSSFRT 60
           MALT+++G      GGG   R +  T S++  F    L      +RT    +  +     
Sbjct: 1   MALTVSSG------GGGARIRCNDLTDSSRNPFSTFRLVNFPNPSRTEQQEEGNEG---- 60

Query: 61  GRFDSKNRRSSTTTKEQEEEDERNRTAEILSDSPNVENAGVAFDVDENLPELPGLQPDFW 120
             FD +N  S     + E+ D          D  +     +         +LPGL+PD +
Sbjct: 61  --FDGENPPSQIVIND-EDGDRTVVNTRFRGDPKDAPKFAI--------KDLPGLEPDPF 120

Query: 121 EGPQWDALGFFLEYLWAFGIVFALIACGIAVTTYNEGATDFKDTPAYKESVQTREILEEP 180
           EG +WD LGFF++YLWAFGI+FALI+ G+A  TYNEGATDFK+TP YKE++Q+R++L+E 
Sbjct: 121 EGEKWDGLGFFVQYLWAFGILFALISGGLAAGTYNEGATDFKETPVYKEAIQSRDLLDEA 179

Query: 181 EASN-PDVFESNPTEVAPSL 200
           E+SN  DVFESNPTEVAP++
Sbjct: 181 ESSNSEDVFESNPTEVAPTI 179

The following BLAST results are available for this feature:

BLAST of Lsi06G013380 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi06G013380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYA9	1.1e-94	91.04	uncharacterized protein LOC111006843 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A0A0LPS1	4.7e-90	88.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G022520 PE=4 SV=1	[more]
A0A5A7UV79	4.0e-89	90.15	Putative AT-rich interactive domain-containing protein 5A OS=Cucumis melo var. m...	[more]
A0A1S3BW57	4.0e-89	90.15	uncharacterized protein LOC103494120 OS=Cucumis melo OX=3656 GN=LOC103494120 PE=...	[more]
A0A6J1JIX0	1.2e-88	88.12	uncharacterized protein LOC111484859 OS=Cucurbita maxima OX=3661 GN=LOC111484859...	[more]

BLAST of Lsi06G013380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876354.1	5.2e-99	96.00	uncharacterized protein LOC120068690 [Benincasa hispida]	[more]
XP_022134616.1	2.3e-94	91.04	uncharacterized protein LOC111006843 [Momordica charantia]	[more]
XP_004138240.1	9.8e-90	88.50	uncharacterized protein LOC101218989 [Cucumis sativus] >KGN63813.1 hypothetical ...	[more]
XP_008453388.1	8.3e-89	90.15	PREDICTED: uncharacterized protein LOC103494120 [Cucumis melo] >KAA0041427.1 put...	[more]
XP_022987248.1	2.4e-88	88.12	uncharacterized protein LOC111484859 [Cucurbita maxima]	[more]

BLAST of Lsi06G013380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73885.1	1.6e-29	41.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..200
None	No IPR available	PANTHER	PTHR36004	AT-RICH INTERACTIVE DOMAIN PROTEIN	coord: 1..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G013380.1	Lsi06G013380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane