Lsi06G012160 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAATTACAAGTTAATTATAAATAGATAATTGGCGAAAAAAAAAAAACCCTAGTTCTACTATACTTTAGCTCCCTCTCTCTGCTGCAAGTCTTTCATGACTGCCGAGTCTTCTTCTGCTCATCACCGGCTGCCCACCACATTCTTCAGCTTGTCTTCAAAGTCCACAAGTTTGTAGTGATCGGAAGGATGTTTGAAAATAATTTACTAGCTTCTGAAGAAAAAGGATGCTTTAAACCTCGCCAAGTTCTTCTCTCCCACCACACTATGAAGCAAAGAAACAACGACAACCAAACTCCCAATTCTGCCGATGAACCCACATCCTTACACCCCCACCAGCGGACTCTTCTTCTTCACGCTGTAGCCTTCTTTTTGGAGCGCAATGGCTTCTCCAAAACCCTCAAAAGGTTTCGCTCTGAAGCGCAGATTCAGGTCCCTACTTTAATCTTTTCTCTTCCAATATGTAAATGTTCGGTTCCCAAATAAGAGTTTTTCGTTGTAATGGTTAAATTTTGTTTTATTCATTGGTTGCCCATTATTGCGCTTTGCAATTTTGTTAGATGAATCACTTAATTGGAGCTGAACCTTATTCATGGAGCTTCTCATTCTAAATGTTTGTGTTTTGTTCCAACTTTACTTGCCAACGATATTCTAGTTTAATCCTACTTTCATATTTTTATAGAACAAGTTTACTAGTAGTTATTTATAATAGCATCCCCTTTCTATCCAAAGTATTGCAAAATTAATTAATTTTGGCTGCGAGTATCTATACTGAGACAATTTCTGTTTTTGTTGTTATTGGTGCAGAAGGGTTCTTCAGAAGATTTATTGCTCAGTCTCGAAGAAATGTGTCACAAGCATTTAAAGAAATGGTAGGACTAGATATTCTTTCGATTATTGTCTGTTGAGCTTAAAAAAACATTGCCAAGTTTGAGTGTGTGTGCGCGTCTGTTTAATGTTGTCTTGAGATCGAATTATAATGGTGTTCAAAAAAATTTCAAATAGTTTGTGTTGTTTGATCGCCTCCTTATATTTCAGTTTCTTTTTAATATTAAGTTTCCTCTTTGTTTTTTTTTAGCAATCCAGTTTTGAATAAGTATTAATTTCTAAAGCATGTTTTTATATGTAAATGCATGTGTAACTTATTCTCAATTCAATTGCTGGTTCTGCTGAGCATTAAAACCAAGGTTCTCATTGTGTTTCATCGTAGATGTTCCTAAATCATTGTATTTATGTTGGAAGTGATAGTATTAGTGACTTCGGTAATTATCCAGACTTTGGCATTTCATCGTCATGCTAATAGTGTTATGCTATATCTTTCTTTCCTTTTCTATTGATTTCTTTTGCCCCAATCTTAGTAGATATAGAAATAAATTCATCTATCTAACTTAATATTCTAATATGCAGTAGTCAAGCCATCACAACCCAAGATAAACCAGGTATCCTCATATTGTCTCCGTTTATAAACATACTAATTATGCTATGGTTTTTATTTTTTTTAATATATCATGAAAGTATTGATTTTAATTGCACATCTGCTCCTGTGTTGGATTTGATCTAGTAGATGAAGAAATGGTGAAAGAGGTTGCTGATGATAGGGTTCCTGAAGCAGAAGAGGAACCTACAAAAAAGTGCAAGGATAAAAAGAAAACCAAAAAGAATGCAGTTCCTGAAATGCATGCTGATGCTGCAGAAAAAGAGAAATCAGAACCTGTCCATGTGGAGAGTTTGAATAACTCAAATGGCACTACTGTCTACGAGGAGGCAGGAAAGAAATCTAAGGATAAAAAGAAAAAGAAGAACAAAGAGAAGTTAGAGACTGTTGCTACAATTTCCGATGATGTAGCAGTAGATTCTATTGGATTGAATAGTGATGTCACCACTATTGAAGAAAAGGTTGTCAAATCCAAAACTAAGAAGAAAAAGGATGGTCGACATTTAAGTGATGAAAATTCGAACCAGCTAAATGATGGTACCAATATGTTACACGAAGAGGAACAGAATGACAATTCTAAGAAAAGGAAGAGGTTGGCTTCTGAAGATAACAACAATCATACTGTTGATGAGAAAGAAACTGAAGATGTCAAACGTAGAAAACTAGAAGGTTCAAAAGGATGCAATGATGGTGTGCAGTCTACAAAGGTCGATGCAGATGCTGGAAATAGGAGCACTATCAATGAGCTTTCTCCGCAGACAAACGAGTGTGTTGAAAAAACTGCAGAGAAAACTTCCACAAAGAAAGCTTTGAAGAAACATTCAAATGGTTCAACTGAGGTATGTCAATATTGTCACCATATATCCATACAAATATTTTAACGATATAACCATTTTGAGACAATTTAATATGCTATATGCCGAAGATGGTGATGCTCTGTCTGAAATCCTTTCGATATTAAACTAGTGTTCTGTCAATTTAATGGGATTACGGGGCTGTTTAGAATGACTTTTTAAGTACAAGCATTTTGATTGCACTCAGAAACACATTTTTATGCAATCAACAAGTCATGAAAGAACATGAAAAAACATAAGTAACTTGTCAACTCCACGAGCATGCCAAATATCCCACAATTAGCAGCTCTTCTACTCTTATTATTATTACTATTATTAAAATTATTATGGTTTTTTAATTTCATATCTGAAGCATCTTGTGATTCAAGCAGGAGAATGAAAAACAGAAATGTTAATTTTAAAAAAAGAAAAGGATAGCTGATATGAAGATGTATTTAAAAACCAGGGAAATCTACTAATTATAATTGTAGCCAATGACCAGTGAACATAAGGGTAGTGGGATCAATGTTTGAAATTTTAATCCTTCCCTTAACTCAGATGTTCATTCTACACTTGATGCAAAATCGACTGTACTGATATATTATTGTATAATTGCAGCCAAAGACCATCAATGCATTTCAAAGGGTAAAAGTAGATGCTGTGACATTTGCTGACGAGAAACTTGCAGATAATTCTTACTGGGCGAAGGTGTGATTTACTGCTGATTATTTAACTTTTTGCCCTGCCTTTTCACTAGGATTTTCTGTTCCTTATTTGTAATCTATCATATTATACTGAGCAGGGTGGAGCCGATACTGGGTATGGTGCAAAAGCTCAAGAAGTTCTTGGGCAGGTTAAAGGAAGGTAATATCTTTTTTTCCTTTCATTTCTACTTAACTTTCATCATGTAACTTTTAGTTCTAGTTTCATTTCTACTGCTGCTTGCTGCTAGCACTGAGTTGTGTGTTGCTAAAACTCATTTCTACTGCTGCTTGCTACAACTATCACTGACTTGTGTGTTGCTAAAACTAACACTGAGTTTTGTGGAGGGAATTTCGATATATTTTCTGGTTTAGAGAAAGGCTCTTGATTCAAATTGATTTATTTATTTAATAGGGATTTTCGGCACGAAAAAACGAAGAAGAAGCGTGGATCATACCGAGGTGGAGTGATTGATCTGCAATCTCACTCAGTAAAGTTCAATTATTCTGATGATGATTGACCATATTAATGGATTCACGATTCTGGTTCTTAACTGCTTTTTTATCAAATCATGTATGAAGTTTCCATTTTATGAAAAGTTTTGGTTGTATGTTCCATGGAAACTCGAAAGAGCTGATGTTCTACATTCATCATAATTTTTTGAAGCAGTCCATCCAAAAAATGGGCTATGCCTCATCGATTTTGAACTTAGTATTGTGCCAGTTTGTAGTCCTCCAAATGCTTTCTTTACTTTAAACTTTATGTATTTTTATTACTGTAACTGGTAGAACAACTGTGGATTGATTTTTTTAATGAAACATAAGCATAATTTCCCA CAATTACAAGTTAATTATAAATAGATAATTGGCGAAAAAAAAAAAACCCTAGTTCTACTATACTTTAGCTCCCTCTCTCTGCTGCAAGTCTTTCATGACTGCCGAGTCTTCTTCTGCTCATCACCGGCTGCCCACCACATTCTTCAGCTTGTCTTCAAAGTCCACAAGTTTGTAGTGATCGGAAGGATGTTTGAAAATAATTTACTAGCTTCTGAAGAAAAAGGATGCTTTAAACCTCGCCAAGTTCTTCTCTCCCACCACACTATGAAGCAAAGAAACAACGACAACCAAACTCCCAATTCTGCCGATGAACCCACATCCTTACACCCCCACCAGCGGACTCTTCTTCTTCACGCTGTAGCCTTCTTTTTGGAGCGCAATGGCTTCTCCAAAACCCTCAAAAGGTTTCGCTCTGAAGCGCAGATTCAGAAGGGTTCTTCAGAAGATTTATTGCTCAGTCTCGAAGAAATGTGTCACAAGCATTTAAAGAAATGTAGTCAAGCCATCACAACCCAAGATAAACCAGATGAAGAAATGGTGAAAGAGGTTGCTGATGATAGGGTTCCTGAAGCAGAAGAGGAACCTACAAAAAAGTGCAAGGATAAAAAGAAAACCAAAAAGAATGCAGTTCCTGAAATGCATGCTGATGCTGCAGAAAAAGAGAAATCAGAACCTGTCCATGTGGAGAGTTTGAATAACTCAAATGGCACTACTGTCTACGAGGAGGCAGGAAAGAAATCTAAGGATAAAAAGAAAAAGAAGAACAAAGAGAAGTTAGAGACTGTTGCTACAATTTCCGATGATGTAGCAGTAGATTCTATTGGATTGAATAGTGATGTCACCACTATTGAAGAAAAGGTTGTCAAATCCAAAACTAAGAAGAAAAAGGATGGTCGACATTTAAGTGATGAAAATTCGAACCAGCTAAATGATGGTACCAATATGTTACACGAAGAGGAACAGAATGACAATTCTAAGAAAAGGAAGAGGTTGGCTTCTGAAGATAACAACAATCATACTGTTGATGAGAAAGAAACTGAAGATGTCAAACGTAGAAAACTAGAAGGTTCAAAAGGATGCAATGATGGTGTGCAGTCTACAAAGGTCGATGCAGATGCTGGAAATAGGAGCACTATCAATGAGCTTTCTCCGCAGACAAACGAGTGTGTTGAAAAAACTGCAGAGAAAACTTCCACAAAGAAAGCTTTGAAGAAACATTCAAATGGTTCAACTGAGCCAAAGACCATCAATGCATTTCAAAGGGTAAAAGTAGATGCTGTGACATTTGCTGACGAGAAACTTGCAGATAATTCTTACTGGGCGAAGGATTTTCTGTTCCTTATTTGTAATCTATCATATTATACTGAGCAGGGTGGAGCCGATACTGGGTATGGTGCAAAAGCTCAAGAAGTTCTTGGGCAGGTTAAAGGAAGGGATTTTCGGCACGAAAAAACGAAGAAGAAGCGTGGATCATACCGAGGTGGAGTGATTGATCTGCAATCTCACTCAGTAAAGTTCAATTATTCTGATGATGATTGACCATATTAATGGATTCACGATTCTGGTTCTTAACTGCTTTTTTATCAAATCATGTATGAAGTTTCCATTTTATGAAAAGTTTTGGTTGTATGTTCCATGGAAACTCGAAAGAGCTGATGTTCTACATTCATCATAATTTTTTGAAGCAGTCCATCCAAAAAATGGGCTATGCCTCATCGATTTTGAACTTAGTATTGTGCCAGTTTGTAGTCCTCCAAATGCTTTCTTTACTTTAAACTTTATGTATTTTTATTACTGTAACTGGTAGAACAACTGTGGATTGATTTTTTTAATGAAACATAAGCATAATTTCCCA ATGTTTGAAAATAATTTACTAGCTTCTGAAGAAAAAGGATGCTTTAAACCTCGCCAAGTTCTTCTCTCCCACCACACTATGAAGCAAAGAAACAACGACAACCAAACTCCCAATTCTGCCGATGAACCCACATCCTTACACCCCCACCAGCGGACTCTTCTTCTTCACGCTGTAGCCTTCTTTTTGGAGCGCAATGGCTTCTCCAAAACCCTCAAAAGGTTTCGCTCTGAAGCGCAGATTCAGAAGGGTTCTTCAGAAGATTTATTGCTCAGTCTCGAAGAAATGTGTCACAAGCATTTAAAGAAATGTAGTCAAGCCATCACAACCCAAGATAAACCAGATGAAGAAATGGTGAAAGAGGTTGCTGATGATAGGGTTCCTGAAGCAGAAGAGGAACCTACAAAAAAGTGCAAGGATAAAAAGAAAACCAAAAAGAATGCAGTTCCTGAAATGCATGCTGATGCTGCAGAAAAAGAGAAATCAGAACCTGTCCATGTGGAGAGTTTGAATAACTCAAATGGCACTACTGTCTACGAGGAGGCAGGAAAGAAATCTAAGGATAAAAAGAAAAAGAAGAACAAAGAGAAGTTAGAGACTGTTGCTACAATTTCCGATGATGTAGCAGTAGATTCTATTGGATTGAATAGTGATGTCACCACTATTGAAGAAAAGGTTGTCAAATCCAAAACTAAGAAGAAAAAGGATGGTCGACATTTAAGTGATGAAAATTCGAACCAGCTAAATGATGGTACCAATATGTTACACGAAGAGGAACAGAATGACAATTCTAAGAAAAGGAAGAGGTTGGCTTCTGAAGATAACAACAATCATACTGTTGATGAGAAAGAAACTGAAGATGTCAAACGTAGAAAACTAGAAGGTTCAAAAGGATGCAATGATGGTGTGCAGTCTACAAAGGTCGATGCAGATGCTGGAAATAGGAGCACTATCAATGAGCTTTCTCCGCAGACAAACGAGTGTGTTGAAAAAACTGCAGAGAAAACTTCCACAAAGAAAGCTTTGAAGAAACATTCAAATGGTTCAACTGAGCCAAAGACCATCAATGCATTTCAAAGGGTAAAAGTAGATGCTGTGACATTTGCTGACGAGAAACTTGCAGATAATTCTTACTGGGCGAAGGATTTTCTGTTCCTTATTTGTAATCTATCATATTATACTGAGCAGGGTGGAGCCGATACTGGGTATGGTGCAAAAGCTCAAGAAGTTCTTGGGCAGGTTAAAGGAAGGGATTTTCGGCACGAAAAAACGAAGAAGAAGCGTGGATCATACCGAGGTGGAGTGATTGATCTGCAATCTCACTCAGTAAAGTTCAATTATTCTGATGATGATTGA MFENNLLASEEKGCFKPRQVLLSHHTMKQRNNDNQTPNSADEPTSLHPHQRTLLLHAVAFFLERNGFSKTLKRFRSEAQIQKGSSEDLLLSLEEMCHKHLKKCSQAITTQDKPDEEMVKEVADDRVPEAEEEPTKKCKDKKKTKKNAVPEMHADAAEKEKSEPVHVESLNNSNGTTVYEEAGKKSKDKKKKKNKEKLETVATISDDVAVDSIGLNSDVTTIEEKVVKSKTKKKKDGRHLSDENSNQLNDGTNMLHEEEQNDNSKKRKRLASEDNNNHTVDEKETEDVKRRKLEGSKGCNDGVQSTKVDADAGNRSTINELSPQTNECVEKTAEKTSTKKALKKHSNGSTEPKTINAFQRVKVDAVTFADEKLADNSYWAKDFLFLICNLSYYTEQGGADTGYGAKAQEVLGQVKGRDFRHEKTKKKRGSYRGGVIDLQSHSVKFNYSDDD Homology
BLAST of Lsi06G012160 vs. ExPASy Swiss-Prot
Match: E9Q5C9 (Nucleolar and coiled-body phosphoprotein 1 OS=Mus musculus OX=10090 GN=Nolc1 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 6.4e-07 Identity = 96/366 (26.23%), Postives = 142/366 (38.80%), Query Frame = 0
BLAST of Lsi06G012160 vs. ExPASy Swiss-Prot
Match: P32583 (Suppressor protein SRP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SRP40 PE=1 SV=2) HSP 1 Score: 49.7 bits (117), Expect = 1.0e-04 Identity = 76/321 (23.68%), Postives = 132/321 (41.12%), Query Frame = 0
BLAST of Lsi06G012160 vs. ExPASy Swiss-Prot
Match: Q14978 (Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens OX=9606 GN=NOLC1 PE=1 SV=2) HSP 1 Score: 47.8 bits (112), Expect = 3.9e-04 Identity = 85/324 (26.23%), Postives = 136/324 (41.98%), Query Frame = 0
BLAST of Lsi06G012160 vs. ExPASy TrEMBL
Match: A0A1S3AWK1 (nucleolar and coiled-body phosphoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103483590 PE=4 SV=1) HSP 1 Score: 655.6 bits (1690), Expect = 1.5e-184 Identity = 364/441 (82.54%), Postives = 384/441 (87.07%), Query Frame = 0
BLAST of Lsi06G012160 vs. ExPASy TrEMBL
Match: A0A5D3D1D6 (Nucleolar and coiled-body phosphoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001630 PE=4 SV=1) HSP 1 Score: 616.3 bits (1588), Expect = 1.0e-172 Identity = 346/424 (81.60%), Postives = 365/424 (86.08%), Query Frame = 0
BLAST of Lsi06G012160 vs. ExPASy TrEMBL
Match: A0A5A7U1N0 (Nucleolar and coiled-body phosphoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G004900 PE=4 SV=1) HSP 1 Score: 604.4 bits (1557), Expect = 4.0e-169 Identity = 344/432 (79.63%), Postives = 363/432 (84.03%), Query Frame = 0
BLAST of Lsi06G012160 vs. ExPASy TrEMBL
Match: A0A6J1JJ58 (nucleolar and coiled-body phosphoprotein 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484917 PE=4 SV=1) HSP 1 Score: 591.7 bits (1524), Expect = 2.7e-165 Identity = 344/452 (76.11%), Postives = 369/452 (81.64%), Query Frame = 0
BLAST of Lsi06G012160 vs. ExPASy TrEMBL
Match: A0A6J1JA31 (nucleolar and coiled-body phosphoprotein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484917 PE=4 SV=1) HSP 1 Score: 587.0 bits (1512), Expect = 6.5e-164 Identity = 344/453 (75.94%), Postives = 369/453 (81.46%), Query Frame = 0
BLAST of Lsi06G012160 vs. NCBI nr
Match: XP_038875161.1 (suppressor protein SRP40-like isoform X1 [Benincasa hispida]) HSP 1 Score: 718.4 bits (1853), Expect = 3.9e-203 Identity = 393/450 (87.33%), Postives = 411/450 (91.33%), Query Frame = 0
BLAST of Lsi06G012160 vs. NCBI nr
Match: XP_038875166.1 (suppressor protein SRP40-like isoform X2 [Benincasa hispida]) HSP 1 Score: 712.2 bits (1837), Expect = 2.8e-201 Identity = 392/450 (87.11%), Postives = 410/450 (91.11%), Query Frame = 0
BLAST of Lsi06G012160 vs. NCBI nr
Match: XP_038880606.1 (nucleolar and coiled-body phosphoprotein 1-like isoform X2 [Benincasa hispida]) HSP 1 Score: 688.3 bits (1775), Expect = 4.3e-194 Identity = 378/441 (85.71%), Postives = 399/441 (90.48%), Query Frame = 0
BLAST of Lsi06G012160 vs. NCBI nr
Match: XP_038880605.1 (nucleolar and coiled-body phosphoprotein 1-like isoform X1 [Benincasa hispida]) HSP 1 Score: 683.7 bits (1763), Expect = 1.1e-192 Identity = 378/442 (85.52%), Postives = 399/442 (90.27%), Query Frame = 0
BLAST of Lsi06G012160 vs. NCBI nr
Match: XP_004134062.1 (nucleolar and coiled-body phosphoprotein 1 isoform X1 [Cucumis sativus]) HSP 1 Score: 669.8 bits (1727), Expect = 1.6e-188 Identity = 370/441 (83.90%), Postives = 391/441 (88.66%), Query Frame = 0
BLAST of Lsi06G012160 vs. TAIR 10
Match: AT5G57120.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). ) HSP 1 Score: 151.0 bits (380), Expect = 2.3e-36 Identity = 148/407 (36.36%), Postives = 198/407 (48.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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